RNA–Protein interactions for RNA: ENST00000478219.1

COL13A1-207, Transcript of collagen type XIII alpha 1 chain, humanhuman

TSL 2

Gene COL13A1, Length 2,586 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL13A1-207ENST00000478219 CCER2I3L3R5 266 aa13.79□□□□□ -0.2
COL13A1-207ENST00000478219 PAK3O75914 559 aaPredicted RBP13.78□□□□□ -0.2
COL13A1-207ENST00000478219 RRBP1Q9P2E9 1410 aaKnown RBP13.78□□□□□ -0.2
COL13A1-207ENST00000478219 CUX2O14529 1486 aa13.78□□□□□ -0.2
COL13A1-207ENST00000478219 SYNJ1O43426 1573 aa13.78□□□□□ -0.2
COL13A1-207ENST00000478219 CCDC136Q96JN2 1154 aa13.78□□□□□ -0.2
COL13A1-207ENST00000478219 MYT1LQ9UL68 1186 aa13.78□□□□□ -0.2
COL13A1-207ENST00000478219 RAB3GAP2Q9H2M9 1393 aa13.76□□□□□ -0.21
COL13A1-207ENST00000478219 BAZ1BQ9UIG0 1483 aaKnown RBP13.76□□□□□ -0.21
COL13A1-207ENST00000478219 ANP32CO43423 234 aa13.76□□□□□ -0.21
COL13A1-207ENST00000478219 PLPPR3Q6T4P5 718 aa13.76□□□□□ -0.21
COL13A1-207ENST00000478219 PABPN1Q86U42 306 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL13A1-207ENST00000478219 ARAP1Q96P48 1450 aa13.73□□□□□ -0.21
COL13A1-207ENST00000478219 HNRNPUQ00839 825 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL13A1-207ENST00000478219 CCNB3Q8WWL7 1395 aa13.72□□□□□ -0.21
COL13A1-207ENST00000478219 IL27Q8NEV9 243 aa13.72□□□□□ -0.21
COL13A1-207ENST00000478219 NOP58Q9Y2X3 529 aaKnown RBP13.71□□□□□ -0.21
COL13A1-207ENST00000478219 B4GALNT3Q6L9W6 998 aa13.7□□□□□ -0.22
COL13A1-207ENST00000478219 RTN4Q9NQC3 1192 aaKnown RBP13.7□□□□□ -0.22
COL13A1-207ENST00000478219 PPP4R2Q9NY27 417 aa13.66□□□□□ -0.22
COL13A1-207ENST00000478219 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.66□□□□□ -0.22
COL13A1-207ENST00000478219 ERICH6BQ5W0A0 696 aa13.62□□□□□ -0.23
COL13A1-207ENST00000478219 SETD5Q9C0A6 1442 aa13.6□□□□□ -0.23
COL13A1-207ENST00000478219 CCDC184Q52MB2 194 aa13.6□□□□□ -0.23
COL13A1-207ENST00000478219 ATAD2BQ9ULI0 1458 aa13.59□□□□□ -0.23
COL13A1-207ENST00000478219 TOP2BQ02880 1626 aa13.57□□□□□ -0.24
COL13A1-207ENST00000478219 ERICH3Q5RHP9 1530 aa13.57□□□□□ -0.24
COL13A1-207ENST00000478219 BIVM-ERCC5R4GMW8 1640 aa13.55□□□□□ -0.24
COL13A1-207ENST00000478219 RTL5Q5HYW3 569 aaPredicted RBP13.53□□□□□ -0.24
COL13A1-207ENST00000478219 IPO9Q96P70 1041 aaKnown RBP13.53□□□□□ -0.24
COL13A1-207ENST00000478219 PRXQ9BXM0 1461 aa13.53□□□□□ -0.24
COL13A1-207ENST00000478219 FAM50AQ14320 339 aaKnown RBP13.51□□□□□ -0.25
COL13A1-207ENST00000478219 HMGXB3Q12766 1538 aa13.5□□□□□ -0.25
COL13A1-207ENST00000478219 UBE2Q2Q8WVN8 375 aa13.5□□□□□ -0.25
COL13A1-207ENST00000478219 TIMELESSQ9UNS1 1208 aa13.5□□□□□ -0.25
COL13A1-207ENST00000478219 NCAPD3P42695 1498 aa13.5□□□□□ -0.25
COL13A1-207ENST00000478219 ARHGAP35Q9NRY4 1499 aa13.5□□□□□ -0.25
COL13A1-207ENST00000478219 PHLDB1Q86UU1 1377 aa13.49□□□□□ -0.25
COL13A1-207ENST00000478219 ZBTB47Q9UFB7 747 aaPredicted RBP13.48□□□□□ -0.25
COL13A1-207ENST00000478219 FAM9BQ8IZU0 186 aa13.48□□□□□ -0.25
COL13A1-207ENST00000478219 WASHC2AQ641Q2 1341 aa13.47□□□□□ -0.25
COL13A1-207ENST00000478219 ANP32AP39687 249 aaKnown RBP13.47□□□□□ -0.25
COL13A1-207ENST00000478219 TONSLQ96HA7 1378 aa13.44□□□□□ -0.26
COL13A1-207ENST00000478219 LAS1LQ9Y4W2 734 aaKnown RBP13.44□□□□□ -0.26
COL13A1-207ENST00000478219 AKNAQ7Z591 1439 aa13.43□□□□□ -0.26
COL13A1-207ENST00000478219 TIAM1Q13009 1591 aa13.41□□□□□ -0.26
COL13A1-207ENST00000478219 BRPF3Q9ULD4 1205 aa13.41□□□□□ -0.26
COL13A1-207ENST00000478219 ZBED9Q6R2W3 1325 aa13.4□□□□□ -0.26
COL13A1-207ENST00000478219 SENP3-EIF4A1A0A087X0R7 540 aa13.4□□□□□ -0.26
COL13A1-207ENST00000478219 NEFMP07197 916 aa13.39□□□□□ -0.27
COL13A1-207ENST00000478219 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
COL13A1-207ENST00000478219 HSPA5P11021 654 aaKnown RBP13.39□□□□□ -0.27
COL13A1-207ENST00000478219 PHF23Q9BUL5 403 aaPredicted RBP13.39□□□□□ -0.27
COL13A1-207ENST00000478219 LRRC9Q6ZRR7 1453 aa13.38□□□□□ -0.27
COL13A1-207ENST00000478219 KDM5BQ9UGL1 1544 aa13.38□□□□□ -0.27
COL13A1-207ENST00000478219 MRS2Q9HD23 443 aa13.38□□□□□ -0.27
COL13A1-207ENST00000478219 C11orf95C9JLR9 678 aaPredicted RBP13.37□□□□□ -0.27
COL13A1-207ENST00000478219 WASHC2CQ9Y4E1 1318 aa13.36□□□□□ -0.27
COL13A1-207ENST00000478219 PRKRIP1Q9H875 184 aaPredicted RBP13.36□□□□□ -0.27
COL13A1-207ENST00000478219 FHAD1B1AJZ9 1412 aa13.36□□□□□ -0.27
COL13A1-207ENST00000478219 EIF5BO60841 1220 aaKnown RBP13.35□□□□□ -0.27
COL13A1-207ENST00000478219 NCBP3Q53F19 620 aaKnown RBP13.35□□□□□ -0.27
COL13A1-207ENST00000478219 KIF27Q86VH2 1401 aa13.33□□□□□ -0.28
COL13A1-207ENST00000478219 MAP3K1Q13233 1512 aa13.33□□□□□ -0.28
COL13A1-207ENST00000478219 CNTLNQ9NXG0 1405 aa13.32□□□□□ -0.28
COL13A1-207ENST00000478219 NCOA2Q15596 1464 aa13.31□□□□□ -0.28
COL13A1-207ENST00000478219 PRDM2Q13029 1718 aa13.31□□□□□ -0.28
COL13A1-207ENST00000478219 AQRO60306 1485 aaKnown RBP eCLIP13.31□□□□□ -0.28
COL13A1-207ENST00000478219 CUX1P39880 1505 aa13.31□□□□□ -0.28
COL13A1-207ENST00000478219 RNF123Q5XPI4 1314 aa13.29□□□□□ -0.28
COL13A1-207ENST00000478219 ATP1B4Q9UN42 357 aaPredicted RBP13.29□□□□□ -0.28
COL13A1-207ENST00000478219 CNGB1Q14028 1251 aaPredicted RBP13.28□□□□□ -0.28
COL13A1-207ENST00000478219 SMG6Q86US8 1419 aaKnown RBP13.28□□□□□ -0.28
COL13A1-207ENST00000478219 CCDC18Q5T9S5 1454 aa13.28□□□□□ -0.28
COL13A1-207ENST00000478219 P3H3Q8IVL6 736 aa13.27□□□□□ -0.28
COL13A1-207ENST00000478219 USP35Q9P2H5 1018 aa13.27□□□□□ -0.28
COL13A1-207ENST00000478219 PTPRKQ15262 1439 aa13.27□□□□□ -0.29
COL13A1-207ENST00000478219 CC2D2AQ9P2K1 1620 aa13.26□□□□□ -0.29
COL13A1-207ENST00000478219 NUDCQ9Y266 331 aa13.26□□□□□ -0.29
COL13A1-207ENST00000478219 EIF4G2P78344 907 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL13A1-207ENST00000478219 UACAQ9BZF9 1416 aa13.25□□□□□ -0.29
COL13A1-207ENST00000478219 CCDC7Q96M83 1385 aa13.25□□□□□ -0.29
COL13A1-207ENST00000478219 PDE4AP27815 886 aa13.25□□□□□ -0.29
COL13A1-207ENST00000478219 CFTRP13569 1480 aa13.24□□□□□ -0.29
COL13A1-207ENST00000478219 GSE1Q14687 1217 aa13.24□□□□□ -0.29
COL13A1-207ENST00000478219 SKAP1Q86WV1 359 aa13.23□□□□□ -0.29
COL13A1-207ENST00000478219 FRAT1Q92837 279 aaPredicted RBP13.23□□□□□ -0.29
COL13A1-207ENST00000478219 PCF11O94913 1555 aaKnown RBP13.22□□□□□ -0.29
COL13A1-207ENST00000478219 NCOA1Q15788 1441 aa13.22□□□□□ -0.29
COL13A1-207ENST00000478219 BACH2Q9BYV9 841 aa13.21□□□□□ -0.29
COL13A1-207ENST00000478219 CFAP43Q8NDM7 1665 aa13.21□□□□□ -0.29
COL13A1-207ENST00000478219 SLC4A3P48751 1232 aa13.21□□□□□ -0.3
COL13A1-207ENST00000478219 PTPN23Q9H3S7 1636 aa13.2□□□□□ -0.3
COL13A1-207ENST00000478219 PPM1GO15355 546 aaPredicted RBP13.2□□□□□ -0.3
COL13A1-207ENST00000478219 EXOC6Q8TAG9 804 aa13.2□□□□□ -0.3
COL13A1-207ENST00000478219 NFKBIBQ15653 356 aa13.19□□□□□ -0.3
COL13A1-207ENST00000478219 HFM1A2PYH4 1435 aa13.19□□□□□ -0.3
COL13A1-207ENST00000478219 NAIPQ13075 1403 aa13.18□□□□□ -0.3
COL13A1-207ENST00000478219 KIF7Q2M1P5 1343 aa13.17□□□□□ -0.3
COL13A1-207ENST00000478219 DENND4BO75064 1496 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms