RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 ARHGEF11O15085 1522 aa21.75■■□□□ 1.07
TOP3A-205ENST00000477508 FAM9AQ8IZU1 332 aaPredicted RBP21.73■■□□□ 1.07
TOP3A-205ENST00000477508 RIMBP3CA6NJZ7 1639 aa21.71■■□□□ 1.07
TOP3A-205ENST00000477508 RIMBP3BA6NNM3 1639 aa21.71■■□□□ 1.07
TOP3A-205ENST00000477508 RIMBP3Q9UFD9 1639 aa21.71■■□□□ 1.07
TOP3A-205ENST00000477508 JPH4Q96JJ6 628 aa21.71■■□□□ 1.07
TOP3A-205ENST00000477508 SENP3Q9H4L4 574 aaPredicted RBP21.71■■□□□ 1.07
TOP3A-205ENST00000477508 SHROOM2Q13796 1616 aa21.69■■□□□ 1.06
TOP3A-205ENST00000477508 IQGAP2Q13576 1575 aa21.63■■□□□ 1.05
TOP3A-205ENST00000477508 KIF21BO75037 1637 aa21.62■■□□□ 1.05
TOP3A-205ENST00000477508 PRG4Q92954 1404 aaPredicted RBP21.62■■□□□ 1.05
TOP3A-205ENST00000477508 CTTNBP2Q8WZ74 1663 aa21.58■■□□□ 1.05
TOP3A-205ENST00000477508 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
TOP3A-205ENST00000477508 CYB5RLQ6IPT4 315 aa21.56■■□□□ 1.04
TOP3A-205ENST00000477508 CARMIL2Q6F5E8 1435 aa21.55■■□□□ 1.04
TOP3A-205ENST00000477508 UGGT2Q9NYU1 1516 aa21.54■■□□□ 1.04
TOP3A-205ENST00000477508 ERCC6L2Q5T890 1561 aa21.53■■□□□ 1.04
TOP3A-205ENST00000477508 GOLGA3Q08378 1498 aa21.52■■□□□ 1.04
TOP3A-205ENST00000477508 UBTFP17480 764 aaKnown RBP21.47■■□□□ 1.03
TOP3A-205ENST00000477508 DISP1Q96F81 1524 aa21.45■■□□□ 1.02
TOP3A-205ENST00000477508 TNIKQ9UKE5 1360 aa21.44■■□□□ 1.02
TOP3A-205ENST00000477508 PTPRGP23470 1445 aa21.41■■□□□ 1.02
TOP3A-205ENST00000477508 KIAA0556O60303 1618 aa21.4■■□□□ 1.02
TOP3A-205ENST00000477508 EHMT2Q96KQ7 1210 aa21.38■■□□□ 1.01
TOP3A-205ENST00000477508 SAMD9Q5K651 1589 aa21.32■■□□□ 1
TOP3A-205ENST00000477508 EFCAB5A4FU69 1503 aa21.31■■□□□ 1
TOP3A-205ENST00000477508 TTBK1Q5TCY1 1321 aaPredicted RBP21.29■■□□□ 1
TOP3A-205ENST00000477508 RANGAP1P46060 587 aaPredicted RBP21.28■■□□□ 1
TOP3A-205ENST00000477508 NPM1P06748 294 aaKnown RBP eCLIP21.27■■□□□ 1
TOP3A-205ENST00000477508 P3H3Q8IVL6 736 aa21.26■□□□□ 0.99
TOP3A-205ENST00000477508 UACAQ9BZF9 1416 aa21.26■□□□□ 0.99
TOP3A-205ENST00000477508 UHRF1BP1LA0JNW5 1464 aa21.25■□□□□ 0.99
TOP3A-205ENST00000477508 ADCY10Q96PN6 1610 aa21.22■□□□□ 0.99
TOP3A-205ENST00000477508 ABCC2Q92887 1545 aa21.2■□□□□ 0.98
TOP3A-205ENST00000477508 FHOD3Q2V2M9 1422 aa21.18■□□□□ 0.98
TOP3A-205ENST00000477508 ARHGAP35Q9NRY4 1499 aa21.18■□□□□ 0.98
TOP3A-205ENST00000477508 PLB1Q6P1J6 1458 aa21.17■□□□□ 0.98
TOP3A-205ENST00000477508 ABCA8O94911 1581 aa21.17■□□□□ 0.98
TOP3A-205ENST00000477508 LOC105371045A0A1W2PR82 267 aa21.14■□□□□ 0.97
TOP3A-205ENST00000477508 CLIP1P30622 1438 aa21.13■□□□□ 0.97
TOP3A-205ENST00000477508 FMN1Q68DA7 1419 aa21.13■□□□□ 0.97
TOP3A-205ENST00000477508 KDM5BQ9UGL1 1544 aa21.13■□□□□ 0.97
TOP3A-205ENST00000477508 MAPKBP1O60336 1514 aa21.11■□□□□ 0.97
TOP3A-205ENST00000477508 RAPGEF6Q8TEU7 1601 aa21.09■□□□□ 0.97
TOP3A-205ENST00000477508 TRHP20396 242 aaPredicted RBP21.08■□□□□ 0.97
TOP3A-205ENST00000477508 CEP162Q5TB80 1403 aa21.06■□□□□ 0.96
TOP3A-205ENST00000477508 ZCCHC11Q5TAX3 1644 aaKnown RBP21.04■□□□□ 0.96
TOP3A-205ENST00000477508 ASXL2Q76L83 1435 aa21.02■□□□□ 0.96
TOP3A-205ENST00000477508 ATP10BO94823 1461 aa21.01■□□□□ 0.95
TOP3A-205ENST00000477508 NUP153P49790 1475 aaKnown RBP21.01■□□□□ 0.95
TOP3A-205ENST00000477508 ABCC10Q5T3U5 1492 aa20.99■□□□□ 0.95
TOP3A-205ENST00000477508 HECW1Q76N89 1606 aa20.96■□□□□ 0.95
TOP3A-205ENST00000477508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.96■□□□□ 0.95
TOP3A-205ENST00000477508 HNRNPUL2Q1KMD3 747 aaKnown RBP20.96■□□□□ 0.95
TOP3A-205ENST00000477508 CASKIN1Q8WXD9 1431 aa20.95■□□□□ 0.95
TOP3A-205ENST00000477508 WDR7Q9Y4E6 1490 aa20.95■□□□□ 0.94
TOP3A-205ENST00000477508 FAM69CQ0P6D2 419 aa20.95■□□□□ 0.94
TOP3A-205ENST00000477508 PLPPR3Q6T4P5 718 aa20.95■□□□□ 0.94
TOP3A-205ENST00000477508 ATP1B4Q9UN42 357 aaPredicted RBP20.95■□□□□ 0.94
TOP3A-205ENST00000477508 ARID3CA6NKF2 412 aa20.94■□□□□ 0.94
TOP3A-205ENST00000477508 DIP2BQ9P265 1576 aa20.93■□□□□ 0.94
TOP3A-205ENST00000477508 FYCO1Q9BQS8 1478 aa20.91■□□□□ 0.94
TOP3A-205ENST00000477508 KIF13AQ9H1H9 1805 aa20.9■□□□□ 0.94
TOP3A-205ENST00000477508 EPRSP07814 1512 aaKnown RBP20.9■□□□□ 0.94
TOP3A-205ENST00000477508 PLEKHD1A6NEE1 506 aa20.9■□□□□ 0.94
TOP3A-205ENST00000477508 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
TOP3A-205ENST00000477508 GLI2P10070 1586 aa20.89■□□□□ 0.94
TOP3A-205ENST00000477508 PCF11O94913 1555 aaKnown RBP20.88■□□□□ 0.93
TOP3A-205ENST00000477508 CCDC18Q5T9S5 1454 aa20.88■□□□□ 0.93
TOP3A-205ENST00000477508 KCNH8Q96L42 1107 aa20.85■□□□□ 0.93
TOP3A-205ENST00000477508 CDK13Q14004 1512 aaKnown RBP20.84■□□□□ 0.93
TOP3A-205ENST00000477508 VPS8Q8N3P4 1428 aa20.82■□□□□ 0.92
TOP3A-205ENST00000477508 LRRIQ1Q96JM4 1722 aa20.78■□□□□ 0.92
TOP3A-205ENST00000477508 MAP3K4Q9Y6R4 1608 aa20.77■□□□□ 0.92
TOP3A-205ENST00000477508 CFAP43Q8NDM7 1665 aa20.77■□□□□ 0.91
TOP3A-205ENST00000477508 TROQ12816 1431 aaPredicted RBP20.76■□□□□ 0.91
TOP3A-205ENST00000477508 CD109Q6YHK3 1445 aa20.75■□□□□ 0.91
TOP3A-205ENST00000477508 ABCA9Q8IUA7 1624 aa20.74■□□□□ 0.91
TOP3A-205ENST00000477508 TEX14Q8IWB6 1497 aa20.73■□□□□ 0.91
TOP3A-205ENST00000477508 TSPOAP1O95153 1857 aa20.73■□□□□ 0.91
TOP3A-205ENST00000477508 MAGI3Q5TCQ9 1506 aa20.71■□□□□ 0.91
TOP3A-205ENST00000477508 KIF14Q15058 1648 aa20.68■□□□□ 0.9
TOP3A-205ENST00000477508 MTUS2Q5JR59 1369 aa20.67■□□□□ 0.9
TOP3A-205ENST00000477508 MAP3K1Q13233 1512 aa20.67■□□□□ 0.9
TOP3A-205ENST00000477508 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.67■□□□□ 0.9
TOP3A-205ENST00000477508 PPRC1Q5VV67 1664 aaKnown RBP20.66■□□□□ 0.9
TOP3A-205ENST00000477508 APLP2Q06481 763 aa20.65■□□□□ 0.9
TOP3A-205ENST00000477508 PHLDB1Q86UU1 1377 aa20.64■□□□□ 0.89
TOP3A-205ENST00000477508 TIAM1Q13009 1591 aa20.63■□□□□ 0.89
TOP3A-205ENST00000477508 TTC37Q6PGP7 1564 aa20.61■□□□□ 0.89
TOP3A-205ENST00000477508 EHBP1L1Q8N3D4 1523 aa20.61■□□□□ 0.89
TOP3A-205ENST00000477508 PLCH2O75038 1416 aa20.6■□□□□ 0.89
TOP3A-205ENST00000477508 NEO1Q92859 1461 aa20.59■□□□□ 0.89
TOP3A-205ENST00000477508 ARAP3Q8WWN8 1544 aa20.58■□□□□ 0.89
TOP3A-205ENST00000477508 MYO5CQ9NQX4 1742 aa20.57■□□□□ 0.88
TOP3A-205ENST00000477508 KDM6BO15054 1643 aa20.56■□□□□ 0.88
TOP3A-205ENST00000477508 CFAP74Q9C0B2 1584 aa20.56■□□□□ 0.88
TOP3A-205ENST00000477508 EFCAB2Q5VUJ9 269 aa20.56■□□□□ 0.88
TOP3A-205ENST00000477508 LRRC9Q6ZRR7 1453 aa20.56■□□□□ 0.88
TOP3A-205ENST00000477508 FANCAO15360 1455 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms