RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	ABCC8	Q09428	1581 aa		14.08	□□□□□ -0.16
HDAC9-223	ENST00000476135	AQR	O60306	1485 aa	Known RBP eCLIP	14.07	□□□□□ -0.16
HDAC9-223	ENST00000476135	TOP2A	P11388	1531 aa	Known RBP	14.05	□□□□□ -0.16
HDAC9-223	ENST00000476135	CLASP1	Q7Z460	1538 aa		14.05	□□□□□ -0.16
HDAC9-223	ENST00000476135	TARBP1	Q13395	1621 aa	Known RBP	14.04	□□□□□ -0.16
HDAC9-223	ENST00000476135	DNMBP	Q6XZF7	1577 aa		14.01	□□□□□ -0.17
HDAC9-223	ENST00000476135	ILDR1	Q86SU0	546 aa	Predicted RBP	14	□□□□□ -0.17
HDAC9-223	ENST00000476135	SYNJ1	O43426	1573 aa		13.98	□□□□□ -0.17
HDAC9-223	ENST00000476135	ZBTB22	O15209	634 aa		13.95	□□□□□ -0.18
HDAC9-223	ENST00000476135	GAPVD1	Q14C86	1478 aa		13.93	□□□□□ -0.18
HDAC9-223	ENST00000476135	POLA1	P09884	1462 aa	Predicted RBP	13.92	□□□□□ -0.18
HDAC9-223	ENST00000476135	SNAPC4	Q5SXM2	1469 aa		13.92	□□□□□ -0.18
HDAC9-223	ENST00000476135	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.91	□□□□□ -0.18
HDAC9-223	ENST00000476135	POLA2	Q14181	598 aa		13.9	□□□□□ -0.18
HDAC9-223	ENST00000476135	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.9	□□□□□ -0.18
HDAC9-223	ENST00000476135	WDR97	A6NE52	1622 aa		13.9	□□□□□ -0.19
HDAC9-223	ENST00000476135	CCDC88B	A6NC98	1476 aa		13.88	□□□□□ -0.19
HDAC9-223	ENST00000476135	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.88	□□□□□ -0.19
HDAC9-223	ENST00000476135	TDRD9	Q8NDG6	1382 aa	Known RBP	13.88	□□□□□ -0.19
HDAC9-223	ENST00000476135	RAD54L2	Q9Y4B4	1467 aa		13.86	□□□□□ -0.19
HDAC9-223	ENST00000476135	SOGA1	O94964	1423 aa		13.85	□□□□□ -0.19
HDAC9-223	ENST00000476135	SYNJ2	O15056	1496 aa		13.84	□□□□□ -0.19
HDAC9-223	ENST00000476135	GRIN2B	Q13224	1484 aa		13.81	□□□□□ -0.2
HDAC9-223	ENST00000476135	KIF13A	Q9H1H9	1805 aa		13.81	□□□□□ -0.2
HDAC9-223	ENST00000476135	KDM4F	A0A1W2PPD8	638 aa		13.77	□□□□□ -0.21
HDAC9-223	ENST00000476135	ERCC6L2	Q5T890	1561 aa		13.74	□□□□□ -0.21
HDAC9-223	ENST00000476135	FGD5	Q6ZNL6	1462 aa		13.73	□□□□□ -0.21
HDAC9-223	ENST00000476135	PBRM1	Q86U86	1689 aa		13.71	□□□□□ -0.21
HDAC9-223	ENST00000476135	CEP170	Q5SW79	1584 aa		13.68	□□□□□ -0.22
HDAC9-223	ENST00000476135	RBM42	Q9BTD8	480 aa	Known RBP	13.68	□□□□□ -0.22
HDAC9-223	ENST00000476135	ATXN8OS	P0DMR3	200 aa		13.65	□□□□□ -0.22
HDAC9-223	ENST00000476135	ABCC10	Q5T3U5	1492 aa		13.65	□□□□□ -0.22
HDAC9-223	ENST00000476135	KDM6B	O15054	1643 aa		13.64	□□□□□ -0.23
HDAC9-223	ENST00000476135	SHROOM2	Q13796	1616 aa		13.64	□□□□□ -0.23
HDAC9-223	ENST00000476135	FAM69C	Q0P6D2	419 aa		13.64	□□□□□ -0.23
HDAC9-223	ENST00000476135	GRIN2A	Q12879	1464 aa		13.62	□□□□□ -0.23
HDAC9-223	ENST00000476135	CUX1	P39880	1505 aa		13.62	□□□□□ -0.23
HDAC9-223	ENST00000476135	NUP160	Q12769	1436 aa		13.62	□□□□□ -0.23
HDAC9-223	ENST00000476135	POTEH	Q6S545	545 aa		13.61	□□□□□ -0.23
HDAC9-223	ENST00000476135	ABCA5	Q8WWZ7	1642 aa		13.6	□□□□□ -0.23
HDAC9-223	ENST00000476135	DIP2B	Q9P265	1576 aa		13.59	□□□□□ -0.23
HDAC9-223	ENST00000476135	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.59	□□□□□ -0.23
HDAC9-223	ENST00000476135	MAPKBP1	O60336	1514 aa		13.59	□□□□□ -0.23
HDAC9-223	ENST00000476135	ABCA10	Q8WWZ4	1543 aa		13.56	□□□□□ -0.24
HDAC9-223	ENST00000476135	NPM1	P06748	294 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
HDAC9-223	ENST00000476135	HECW2	Q9P2P5	1572 aa		13.54	□□□□□ -0.24
HDAC9-223	ENST00000476135	ADAMTS12	P58397	1594 aa		13.54	□□□□□ -0.24
HDAC9-223	ENST00000476135	ADGRL1	O94910	1474 aa		13.51	□□□□□ -0.25
HDAC9-223	ENST00000476135	PRG4	Q92954	1404 aa	Predicted RBP	13.51	□□□□□ -0.25
HDAC9-223	ENST00000476135	TSPOAP1	O95153	1857 aa		13.5	□□□□□ -0.25
HDAC9-223	ENST00000476135	FBXO41	Q8TF61	875 aa		13.5	□□□□□ -0.25
HDAC9-223	ENST00000476135	FHAD1	B1AJZ9	1412 aa		13.47	□□□□□ -0.25
HDAC9-223	ENST00000476135	JPH4	Q96JJ6	628 aa		13.47	□□□□□ -0.25
HDAC9-223	ENST00000476135	ADCY10	Q96PN6	1610 aa		13.46	□□□□□ -0.26
HDAC9-223	ENST00000476135	AKT1S1	Q96B36	256 aa		13.4	□□□□□ -0.26
HDAC9-223	ENST00000476135	ERICH3	Q5RHP9	1530 aa		13.39	□□□□□ -0.27
HDAC9-223	ENST00000476135	CHRDL2	Q6WN34	429 aa		13.37	□□□□□ -0.27
HDAC9-223	ENST00000476135	CSRNP3	Q8WYN3	585 aa		13.37	□□□□□ -0.27
HDAC9-223	ENST00000476135	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.37	□□□□□ -0.27
HDAC9-223	ENST00000476135	PPRC1	Q5VV67	1664 aa	Known RBP	13.37	□□□□□ -0.27
HDAC9-223	ENST00000476135	RUSC2	Q8N2Y8	1516 aa		13.36	□□□□□ -0.27
HDAC9-223	ENST00000476135	GLI2	P10070	1586 aa		13.33	□□□□□ -0.28
HDAC9-223	ENST00000476135	LMTK3	Q96Q04	1460 aa		13.31	□□□□□ -0.28
HDAC9-223	ENST00000476135	TOP2B	Q02880	1626 aa		13.31	□□□□□ -0.28
HDAC9-223	ENST00000476135	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.3	□□□□□ -0.28
HDAC9-223	ENST00000476135	REM2	Q8IYK8	340 aa	Predicted RBP	13.28	□□□□□ -0.28
HDAC9-223	ENST00000476135	PLB1	Q6P1J6	1458 aa		13.28	□□□□□ -0.28
HDAC9-223	ENST00000476135	MKRN4P	Q13434	485 aa	Predicted RBP	13.26	□□□□□ -0.29
HDAC9-223	ENST00000476135	ASXL2	Q76L83	1435 aa		13.26	□□□□□ -0.29
HDAC9-223	ENST00000476135	BIVM-ERCC5	R4GMW8	1640 aa		13.26	□□□□□ -0.29
HDAC9-223	ENST00000476135	ABCC2	Q92887	1545 aa		13.25	□□□□□ -0.29
HDAC9-223	ENST00000476135	EHMT2	Q96KQ7	1210 aa		13.24	□□□□□ -0.29
HDAC9-223	ENST00000476135	KIAA0586	Q9BVV6	1533 aa		13.23	□□□□□ -0.29
HDAC9-223	ENST00000476135	TEX14	Q8IWB6	1497 aa		13.23	□□□□□ -0.29
HDAC9-223	ENST00000476135	MAP3K4	Q9Y6R4	1608 aa		13.23	□□□□□ -0.29
HDAC9-223	ENST00000476135	PTPRG	P23470	1445 aa		13.22	□□□□□ -0.29
HDAC9-223	ENST00000476135	SOCS7	O14512	581 aa		13.22	□□□□□ -0.29
HDAC9-223	ENST00000476135	SPDYE2B	A6NHP3	402 aa		13.2	□□□□□ -0.3
HDAC9-223	ENST00000476135	SPDYE6	P0CI01	402 aa		13.2	□□□□□ -0.3
HDAC9-223	ENST00000476135	SPDYE2	Q495Y8	402 aa		13.2	□□□□□ -0.3
HDAC9-223	ENST00000476135	CUL7	Q14999	1698 aa		13.19	□□□□□ -0.3
HDAC9-223	ENST00000476135	EPRS	P07814	1512 aa	Known RBP	13.18	□□□□□ -0.3
HDAC9-223	ENST00000476135	UHRF1BP1L	A0JNW5	1464 aa		13.17	□□□□□ -0.3
HDAC9-223	ENST00000476135	TNIK	Q9UKE5	1360 aa		13.16	□□□□□ -0.3
HDAC9-223	ENST00000476135	PITPNM1	O00562	1244 aa		13.15	□□□□□ -0.3
HDAC9-223	ENST00000476135	ILDR2	Q71H61	639 aa		13.15	□□□□□ -0.3
HDAC9-223	ENST00000476135	CARMIL2	Q6F5E8	1435 aa		13.13	□□□□□ -0.31
HDAC9-223	ENST00000476135	KDM5B	Q9UGL1	1544 aa		13.11	□□□□□ -0.31
HDAC9-223	ENST00000476135	UACA	Q9BZF9	1416 aa		13.11	□□□□□ -0.31
HDAC9-223	ENST00000476135	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.11	□□□□□ -0.31
HDAC9-223	ENST00000476135	KIF21B	O75037	1637 aa		13.1	□□□□□ -0.31
HDAC9-223	ENST00000476135	DISP3	Q9P2K9	1392 aa		13.1	□□□□□ -0.31
HDAC9-223	ENST00000476135	PTPRM	P28827	1452 aa		13.09	□□□□□ -0.31
HDAC9-223	ENST00000476135	PIP4P2	Q8N4L2	257 aa		13.07	□□□□□ -0.32
HDAC9-223	ENST00000476135	PCF11	O94913	1555 aa	Known RBP	13.07	□□□□□ -0.32
HDAC9-223	ENST00000476135	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.06	□□□□□ -0.32
HDAC9-223	ENST00000476135	ADAMTSL3	P82987	1691 aa		13.06	□□□□□ -0.32
HDAC9-223	ENST00000476135	MAGI3	Q5TCQ9	1506 aa		13.06	□□□□□ -0.32
HDAC9-223	ENST00000476135	ZNF692	Q9BU19	519 aa	Predicted RBP	13.05	□□□□□ -0.32
HDAC9-223	ENST00000476135	IGF1R	P08069	1367 aa		13.05	□□□□□ -0.32

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