RNA–Protein interactions for RNA: ENST00000474851.1

LSAMP-203, Transcript of limbic system associated membrane protein, humanhuman

TSL 5

Gene LSAMP, Length 772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-203ENST00000474851 ARAP1Q96P48 1450 aa12.38□□□□□ -0.43
LSAMP-203ENST00000474851 CHD1O14646 1710 aa12.37□□□□□ -0.43
LSAMP-203ENST00000474851 KIF27Q86VH2 1401 aa12.37□□□□□ -0.43
LSAMP-203ENST00000474851 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
LSAMP-203ENST00000474851 ADAMTS12P58397 1594 aa12.33□□□□□ -0.44
LSAMP-203ENST00000474851 PBRM1Q86U86 1689 aa12.31□□□□□ -0.44
LSAMP-203ENST00000474851 CARMIL1Q5VZK9 1371 aa12.3□□□□□ -0.44
LSAMP-203ENST00000474851 CEP170Q5SW79 1584 aa12.29□□□□□ -0.44
LSAMP-203ENST00000474851 PRG4Q92954 1404 aaPredicted RBP12.25□□□□□ -0.45
LSAMP-203ENST00000474851 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
LSAMP-203ENST00000474851 ERCC6L2Q5T890 1561 aa12.24□□□□□ -0.45
LSAMP-203ENST00000474851 KIAA0586Q9BVV6 1533 aa12.23□□□□□ -0.45
LSAMP-203ENST00000474851 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.45
LSAMP-203ENST00000474851 SHROOM2Q13796 1616 aa12.18□□□□□ -0.46
LSAMP-203ENST00000474851 RAPGEF2Q9Y4G8 1499 aa12.15□□□□□ -0.46
LSAMP-203ENST00000474851 CSRNP3Q8WYN3 585 aa12.14□□□□□ -0.47
LSAMP-203ENST00000474851 CUL7Q14999 1698 aa12.13□□□□□ -0.47
LSAMP-203ENST00000474851 PRXQ9BXM0 1461 aa12.13□□□□□ -0.47
LSAMP-203ENST00000474851 PTPRGP23470 1445 aa12.11□□□□□ -0.47
LSAMP-203ENST00000474851 TNIKQ9UKE5 1360 aa12.09□□□□□ -0.47
LSAMP-203ENST00000474851 TTBK1Q5TCY1 1321 aaPredicted RBP12.08□□□□□ -0.48
LSAMP-203ENST00000474851 NPM1P06748 294 aaKnown RBP eCLIP12.07□□□□□ -0.48
LSAMP-203ENST00000474851 CARMIL2Q6F5E8 1435 aa12.07□□□□□ -0.48
LSAMP-203ENST00000474851 DISP1Q96F81 1524 aa12.06□□□□□ -0.48
LSAMP-203ENST00000474851 FAM9AQ8IZU1 332 aaPredicted RBP12.05□□□□□ -0.48
LSAMP-203ENST00000474851 UGGT2Q9NYU1 1516 aa12.04□□□□□ -0.48
LSAMP-203ENST00000474851 IQGAP2Q13576 1575 aa12.03□□□□□ -0.48
LSAMP-203ENST00000474851 FAM69CQ0P6D2 419 aa12.02□□□□□ -0.49
LSAMP-203ENST00000474851 EEA1Q15075 1411 aa12.02□□□□□ -0.49
LSAMP-203ENST00000474851 UACAQ9BZF9 1416 aa12□□□□□ -0.49
LSAMP-203ENST00000474851 UHRF1BP1LA0JNW5 1464 aa11.98□□□□□ -0.49
LSAMP-203ENST00000474851 ABCC10Q5T3U5 1492 aa11.98□□□□□ -0.49
LSAMP-203ENST00000474851 ADCY10Q96PN6 1610 aa11.97□□□□□ -0.49
LSAMP-203ENST00000474851 ABCC2Q92887 1545 aa11.96□□□□□ -0.49
LSAMP-203ENST00000474851 P3H3Q8IVL6 736 aa11.96□□□□□ -0.49
LSAMP-203ENST00000474851 MAPKBP1O60336 1514 aa11.96□□□□□ -0.5
LSAMP-203ENST00000474851 GOLGA3Q08378 1498 aa11.94□□□□□ -0.5
LSAMP-203ENST00000474851 PLB1Q6P1J6 1458 aa11.93□□□□□ -0.5
LSAMP-203ENST00000474851 ASXL2Q76L83 1435 aa11.93□□□□□ -0.5
LSAMP-203ENST00000474851 KDM5BQ9UGL1 1544 aa11.92□□□□□ -0.5
LSAMP-203ENST00000474851 KIAA0556O60303 1618 aa11.91□□□□□ -0.5
LSAMP-203ENST00000474851 RANGAP1P46060 587 aaPredicted RBP11.9□□□□□ -0.5
LSAMP-203ENST00000474851 EHMT2Q96KQ7 1210 aa11.89□□□□□ -0.51
LSAMP-203ENST00000474851 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
LSAMP-203ENST00000474851 ABCA8O94911 1581 aa11.85□□□□□ -0.51
LSAMP-203ENST00000474851 DIP2BQ9P265 1576 aa11.85□□□□□ -0.51
LSAMP-203ENST00000474851 ARID3CA6NKF2 412 aa11.85□□□□□ -0.51
LSAMP-203ENST00000474851 KCNH8Q96L42 1107 aa11.84□□□□□ -0.51
LSAMP-203ENST00000474851 EPRSP07814 1512 aaKnown RBP11.84□□□□□ -0.51
LSAMP-203ENST00000474851 ATP10BO94823 1461 aa11.83□□□□□ -0.52
LSAMP-203ENST00000474851 FHOD3Q2V2M9 1422 aa11.83□□□□□ -0.52
LSAMP-203ENST00000474851 KIF21BO75037 1637 aa11.81□□□□□ -0.52
LSAMP-203ENST00000474851 WDR7Q9Y4E6 1490 aa11.81□□□□□ -0.52
LSAMP-203ENST00000474851 GLI2P10070 1586 aa11.8□□□□□ -0.52
LSAMP-203ENST00000474851 CTTNBP2Q8WZ74 1663 aa11.8□□□□□ -0.52
LSAMP-203ENST00000474851 SAMD9Q5K651 1589 aa11.79□□□□□ -0.52
LSAMP-203ENST00000474851 KIF13AQ9H1H9 1805 aa11.78□□□□□ -0.52
LSAMP-203ENST00000474851 COL17A1Q9UMD9 1497 aaPredicted RBP11.77□□□□□ -0.52
LSAMP-203ENST00000474851 NUP153P49790 1475 aaKnown RBP11.76□□□□□ -0.53
LSAMP-203ENST00000474851 ZCCHC11Q5TAX3 1644 aaKnown RBP11.76□□□□□ -0.53
LSAMP-203ENST00000474851 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.76□□□□□ -0.53
LSAMP-203ENST00000474851 HNRNPUL2Q1KMD3 747 aaKnown RBP11.76□□□□□ -0.53
LSAMP-203ENST00000474851 CD109Q6YHK3 1445 aa11.76□□□□□ -0.53
LSAMP-203ENST00000474851 ARHGAP35Q9NRY4 1499 aa11.75□□□□□ -0.53
LSAMP-203ENST00000474851 PLEKHD1A6NEE1 506 aa11.74□□□□□ -0.53
LSAMP-203ENST00000474851 EFCAB5A4FU69 1503 aa11.72□□□□□ -0.53
LSAMP-203ENST00000474851 MAGI3Q5TCQ9 1506 aa11.71□□□□□ -0.53
LSAMP-203ENST00000474851 TEX14Q8IWB6 1497 aa11.7□□□□□ -0.54
LSAMP-203ENST00000474851 FMN1Q68DA7 1419 aa11.69□□□□□ -0.54
LSAMP-203ENST00000474851 KDM4FA0A1W2PPD8 638 aa11.69□□□□□ -0.54
LSAMP-203ENST00000474851 ATP1B4Q9UN42 357 aaPredicted RBP11.69□□□□□ -0.54
LSAMP-203ENST00000474851 RAPGEF6Q8TEU7 1601 aa11.68□□□□□ -0.54
LSAMP-203ENST00000474851 MAP3K4Q9Y6R4 1608 aa11.68□□□□□ -0.54
LSAMP-203ENST00000474851 PPRC1Q5VV67 1664 aaKnown RBP11.67□□□□□ -0.54
LSAMP-203ENST00000474851 KDM6BO15054 1643 aa11.66□□□□□ -0.54
LSAMP-203ENST00000474851 PHLDB1Q86UU1 1377 aa11.66□□□□□ -0.54
LSAMP-203ENST00000474851 LOC105371045A0A1W2PR82 267 aa11.65□□□□□ -0.54
LSAMP-203ENST00000474851 RAPGEF3O95398 923 aa11.64□□□□□ -0.55
LSAMP-203ENST00000474851 CDK11AQ9UQ88 783 aaPredicted RBP11.64□□□□□ -0.55
LSAMP-203ENST00000474851 CLIP1P30622 1438 aa11.63□□□□□ -0.55
LSAMP-203ENST00000474851 CDK13Q14004 1512 aaKnown RBP11.63□□□□□ -0.55
LSAMP-203ENST00000474851 ARAP3Q8WWN8 1544 aa11.62□□□□□ -0.55
LSAMP-203ENST00000474851 CASKIN1Q8WXD9 1431 aa11.61□□□□□ -0.55
LSAMP-203ENST00000474851 TSPOAP1O95153 1857 aa11.61□□□□□ -0.55
LSAMP-203ENST00000474851 MAPK8IP2Q13387 824 aaPredicted RBP11.6□□□□□ -0.55
LSAMP-203ENST00000474851 NEO1Q92859 1461 aa11.59□□□□□ -0.55
LSAMP-203ENST00000474851 ABCA9Q8IUA7 1624 aa11.59□□□□□ -0.55
LSAMP-203ENST00000474851 PLCH2O75038 1416 aa11.59□□□□□ -0.55
LSAMP-203ENST00000474851 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.58□□□□□ -0.56
LSAMP-203ENST00000474851 TROQ12816 1431 aaPredicted RBP11.58□□□□□ -0.56
LSAMP-203ENST00000474851 AKNAQ7Z591 1439 aa11.58□□□□□ -0.56
LSAMP-203ENST00000474851 CFAP43Q8NDM7 1665 aa11.57□□□□□ -0.56
LSAMP-203ENST00000474851 EFCAB2Q5VUJ9 269 aa11.57□□□□□ -0.56
LSAMP-203ENST00000474851 CEP162Q5TB80 1403 aa11.54□□□□□ -0.56
LSAMP-203ENST00000474851 FANCAO15360 1455 aa11.54□□□□□ -0.56
LSAMP-203ENST00000474851 DENND4BO75064 1496 aaPredicted RBP11.53□□□□□ -0.56
LSAMP-203ENST00000474851 HECW1Q76N89 1606 aa11.53□□□□□ -0.56
LSAMP-203ENST00000474851 SCAPERQ9BY12 1400 aa11.52□□□□□ -0.57
LSAMP-203ENST00000474851 FYCO1Q9BQS8 1478 aa11.51□□□□□ -0.57
LSAMP-203ENST00000474851 AFAP1Q8N556 730 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 1500.6 ms