RNA–Protein interactions for RNA: ENST00000474289.6

ECHDC1-214, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 2,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-214ENST00000474289 FANCIQ9NVI1 1328 aa26.23■■□□□ 1.79
ECHDC1-214ENST00000474289 CUX1P39880 1505 aa26.19■■□□□ 1.78
ECHDC1-214ENST00000474289 SIN3AQ96ST3 1273 aa26.17■■□□□ 1.78
ECHDC1-214ENST00000474289 ANP32CO43423 234 aa26.16■■□□□ 1.78
ECHDC1-214ENST00000474289 ARHGAP35Q9NRY4 1499 aa26.14■■□□□ 1.78
ECHDC1-214ENST00000474289 KIF27Q86VH2 1401 aa26.14■■□□□ 1.77
ECHDC1-214ENST00000474289 SETD5Q9C0A6 1442 aa26.14■■□□□ 1.77
ECHDC1-214ENST00000474289 HIRIP3Q9BW71 556 aaPredicted RBP26.12■■□□□ 1.77
ECHDC1-214ENST00000474289 ERICH6Q7L0X2 663 aa26.1■■□□□ 1.77
ECHDC1-214ENST00000474289 CDK11AQ9UQ88 783 aaPredicted RBP26.07■■□□□ 1.76
ECHDC1-214ENST00000474289 TIMELESSQ9UNS1 1208 aa26.04■■□□□ 1.76
ECHDC1-214ENST00000474289 TIAM1Q13009 1591 aa25.98■■□□□ 1.75
ECHDC1-214ENST00000474289 IRX6P78412 446 aaPredicted RBP25.98■■□□□ 1.75
ECHDC1-214ENST00000474289 MYT1LQ9UL68 1186 aa25.95■■□□□ 1.75
ECHDC1-214ENST00000474289 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
ECHDC1-214ENST00000474289 MAP3K1Q13233 1512 aa25.93■■□□□ 1.74
ECHDC1-214ENST00000474289 NCAPD3P42695 1498 aa25.92■■□□□ 1.74
ECHDC1-214ENST00000474289 PHLDB1Q86UU1 1377 aa25.92■■□□□ 1.74
ECHDC1-214ENST00000474289 HNRNPUQ00839 825 aaKnown RBP eCLIP25.91■■□□□ 1.74
ECHDC1-214ENST00000474289 CFTRP13569 1480 aa25.9■■□□□ 1.74
ECHDC1-214ENST00000474289 LRRC9Q6ZRR7 1453 aa25.88■■□□□ 1.73
ECHDC1-214ENST00000474289 DEKP35659 375 aaKnown RBP25.88■■□□□ 1.73
ECHDC1-214ENST00000474289 FAM50AQ14320 339 aaKnown RBP25.88■■□□□ 1.73
ECHDC1-214ENST00000474289 IGF1RP08069 1367 aa25.85■■□□□ 1.73
ECHDC1-214ENST00000474289 PRKCSHP14314 528 aaPredicted RBP25.83■■□□□ 1.72
ECHDC1-214ENST00000474289 ERICH6BQ5W0A0 696 aa25.82■■□□□ 1.72
ECHDC1-214ENST00000474289 PPP4R2Q9NY27 417 aa25.79■■□□□ 1.72
ECHDC1-214ENST00000474289 TONSLQ96HA7 1378 aa25.77■■□□□ 1.72
ECHDC1-214ENST00000474289 CARMIL1Q5VZK9 1371 aa25.74■■□□□ 1.71
ECHDC1-214ENST00000474289 P3H3Q8IVL6 736 aa25.71■■□□□ 1.71
ECHDC1-214ENST00000474289 CFAP43Q8NDM7 1665 aa25.7■■□□□ 1.7
ECHDC1-214ENST00000474289 PCF11O94913 1555 aaKnown RBP25.67■■□□□ 1.7
ECHDC1-214ENST00000474289 ATP1B4Q9UN42 357 aaPredicted RBP25.67■■□□□ 1.7
ECHDC1-214ENST00000474289 B4GALNT3Q6L9W6 998 aa25.66■■□□□ 1.7
ECHDC1-214ENST00000474289 NOP58Q9Y2X3 529 aaKnown RBP25.66■■□□□ 1.7
ECHDC1-214ENST00000474289 PRDM2Q13029 1718 aa25.65■■□□□ 1.7
ECHDC1-214ENST00000474289 FHAD1B1AJZ9 1412 aa25.64■■□□□ 1.7
ECHDC1-214ENST00000474289 FGD5Q6ZNL6 1462 aa25.64■■□□□ 1.69
ECHDC1-214ENST00000474289 NBR1Q14596 966 aa25.62■■□□□ 1.69
ECHDC1-214ENST00000474289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.6■■□□□ 1.69
ECHDC1-214ENST00000474289 PAK3O75914 559 aaPredicted RBP25.59■■□□□ 1.69
ECHDC1-214ENST00000474289 WASHC2AQ641Q2 1341 aa25.59■■□□□ 1.69
ECHDC1-214ENST00000474289 CCDC18Q5T9S5 1454 aa25.58■■□□□ 1.69
ECHDC1-214ENST00000474289 KDM5BQ9UGL1 1544 aa25.57■■□□□ 1.68
ECHDC1-214ENST00000474289 FHOD3Q2V2M9 1422 aa25.56■■□□□ 1.68
ECHDC1-214ENST00000474289 CCDC184Q52MB2 194 aa25.56■■□□□ 1.68
ECHDC1-214ENST00000474289 UACAQ9BZF9 1416 aa25.55■■□□□ 1.68
ECHDC1-214ENST00000474289 CADPSQ9ULU8 1353 aa25.51■■□□□ 1.67
ECHDC1-214ENST00000474289 HSPA5P11021 654 aaKnown RBP25.48■■□□□ 1.67
ECHDC1-214ENST00000474289 ZBED9Q6R2W3 1325 aa25.48■■□□□ 1.67
ECHDC1-214ENST00000474289 NCOA2Q15596 1464 aa25.48■■□□□ 1.67
ECHDC1-214ENST00000474289 HFM1A2PYH4 1435 aa25.48■■□□□ 1.67
ECHDC1-214ENST00000474289 FYCO1Q9BQS8 1478 aa25.47■■□□□ 1.67
ECHDC1-214ENST00000474289 CNTLNQ9NXG0 1405 aa25.46■■□□□ 1.67
ECHDC1-214ENST00000474289 PTPN23Q9H3S7 1636 aa25.46■■□□□ 1.67
ECHDC1-214ENST00000474289 FGD6Q6ZV73 1430 aa25.46■■□□□ 1.67
ECHDC1-214ENST00000474289 FAM9BQ8IZU0 186 aa25.46■■□□□ 1.67
ECHDC1-214ENST00000474289 ANO8Q9HCE9 1232 aaPredicted RBP25.46■■□□□ 1.67
ECHDC1-214ENST00000474289 PTPRKQ15262 1439 aa25.44■■□□□ 1.66
ECHDC1-214ENST00000474289 CASKIN1Q8WXD9 1431 aa25.43■■□□□ 1.66
ECHDC1-214ENST00000474289 PRKRIP1Q9H875 184 aaPredicted RBP25.41■■□□□ 1.66
ECHDC1-214ENST00000474289 AQRO60306 1485 aaKnown RBP eCLIP25.4■■□□□ 1.66
ECHDC1-214ENST00000474289 MRS2Q9HD23 443 aa25.39■■□□□ 1.66
ECHDC1-214ENST00000474289 IPO9Q96P70 1041 aaKnown RBP25.38■■□□□ 1.65
ECHDC1-214ENST00000474289 RAD54L2Q9Y4B4 1467 aa25.38■■□□□ 1.65
ECHDC1-214ENST00000474289 NAIPQ13075 1403 aa25.37■■□□□ 1.65
ECHDC1-214ENST00000474289 EFCAB5A4FU69 1503 aa25.37■■□□□ 1.65
ECHDC1-214ENST00000474289 ANP32AP39687 249 aaKnown RBP25.36■■□□□ 1.65
ECHDC1-214ENST00000474289 EIF4G2P78344 907 aaKnown RBP eCLIP25.36■■□□□ 1.65
ECHDC1-214ENST00000474289 RTL5Q5HYW3 569 aaPredicted RBP25.35■■□□□ 1.65
ECHDC1-214ENST00000474289 FANCD2Q9BXW9 1451 aa25.31■■□□□ 1.64
ECHDC1-214ENST00000474289 C11orf95C9JLR9 678 aaPredicted RBP25.31■■□□□ 1.64
ECHDC1-214ENST00000474289 SALL2Q9Y467 1007 aaPredicted RBP25.31■■□□□ 1.64
ECHDC1-214ENST00000474289 AKNAQ7Z591 1439 aa25.3■■□□□ 1.64
ECHDC1-214ENST00000474289 NCOA1Q15788 1441 aa25.29■■□□□ 1.64
ECHDC1-214ENST00000474289 ZBTB47Q9UFB7 747 aaPredicted RBP25.29■■□□□ 1.64
ECHDC1-214ENST00000474289 CCDC7Q96M83 1385 aa25.29■■□□□ 1.64
ECHDC1-214ENST00000474289 FMN1Q68DA7 1419 aa25.29■■□□□ 1.64
ECHDC1-214ENST00000474289 MTUS2Q5JR59 1369 aa25.28■■□□□ 1.64
ECHDC1-214ENST00000474289 SNAPC4Q5SXM2 1469 aa25.28■■□□□ 1.64
ECHDC1-214ENST00000474289 CTTNBP2Q8WZ74 1663 aa25.27■■□□□ 1.64
ECHDC1-214ENST00000474289 ABCA10Q8WWZ4 1543 aa25.27■■□□□ 1.64
ECHDC1-214ENST00000474289 SMG6Q86US8 1419 aaKnown RBP25.26■■□□□ 1.63
ECHDC1-214ENST00000474289 CCDC136Q96JN2 1154 aa25.25■■□□□ 1.63
ECHDC1-214ENST00000474289 IL27Q8NEV9 243 aa25.25■■□□□ 1.63
ECHDC1-214ENST00000474289 POLA1P09884 1462 aaPredicted RBP25.25■■□□□ 1.63
ECHDC1-214ENST00000474289 DENND4BO75064 1496 aaPredicted RBP25.23■■□□□ 1.63
ECHDC1-214ENST00000474289 DNMBPQ6XZF7 1577 aa25.22■■□□□ 1.63
ECHDC1-214ENST00000474289 LRRIQ1Q96JM4 1722 aa25.22■■□□□ 1.63
ECHDC1-214ENST00000474289 CC2D2AQ9P2K1 1620 aa25.22■■□□□ 1.63
ECHDC1-214ENST00000474289 RNF123Q5XPI4 1314 aa25.22■■□□□ 1.63
ECHDC1-214ENST00000474289 CUL7Q14999 1698 aa25.21■■□□□ 1.63
ECHDC1-214ENST00000474289 TOPBP1Q92547 1522 aa25.19■■□□□ 1.62
ECHDC1-214ENST00000474289 NUDCQ9Y266 331 aa25.18■■□□□ 1.62
ECHDC1-214ENST00000474289 MYOM3Q5VTT5 1437 aa25.18■■□□□ 1.62
ECHDC1-214ENST00000474289 HECW1Q76N89 1606 aa25.17■■□□□ 1.62
ECHDC1-214ENST00000474289 L3MBTL2Q969R5 705 aa25.15■■□□□ 1.62
ECHDC1-214ENST00000474289 RTN4Q9NQC3 1192 aaKnown RBP25.13■■□□□ 1.61
ECHDC1-214ENST00000474289 RRP7BPQ9NSQ0 103 aa25.12■■□□□ 1.61
ECHDC1-214ENST00000474289 ABCA5Q8WWZ7 1642 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms