RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 CEP162Q5TB80 1403 aa16.36■□□□□ 0.21
PRPF38A-202ENST00000474048 CHD1O14646 1710 aa16.35■□□□□ 0.21
PRPF38A-202ENST00000474048 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
PRPF38A-202ENST00000474048 CLIP1P30622 1438 aa16.32■□□□□ 0.2
PRPF38A-202ENST00000474048 IQGAP2Q13576 1575 aa16.3■□□□□ 0.2
PRPF38A-202ENST00000474048 EFCAB5A4FU69 1503 aa16.25■□□□□ 0.19
PRPF38A-202ENST00000474048 CEP170Q5SW79 1584 aa16.25■□□□□ 0.19
PRPF38A-202ENST00000474048 KIAA0586Q9BVV6 1533 aa16.24■□□□□ 0.19
PRPF38A-202ENST00000474048 NUP160Q12769 1436 aa16.22■□□□□ 0.19
PRPF38A-202ENST00000474048 CARMIL2Q6F5E8 1435 aa16.16■□□□□ 0.18
PRPF38A-202ENST00000474048 ARHGAP35Q9NRY4 1499 aa16.16■□□□□ 0.18
PRPF38A-202ENST00000474048 UGGT2Q9NYU1 1516 aa16.15■□□□□ 0.18
PRPF38A-202ENST00000474048 SAMD9Q5K651 1589 aa16.15■□□□□ 0.18
PRPF38A-202ENST00000474048 VPS8Q8N3P4 1428 aa16.12■□□□□ 0.17
PRPF38A-202ENST00000474048 APLP2Q06481 763 aa16.12■□□□□ 0.17
PRPF38A-202ENST00000474048 P3H3Q8IVL6 736 aa16.12■□□□□ 0.17
PRPF38A-202ENST00000474048 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
PRPF38A-202ENST00000474048 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
PRPF38A-202ENST00000474048 FHOD3Q2V2M9 1422 aa16.11■□□□□ 0.17
PRPF38A-202ENST00000474048 OSCARQ8IYS5 282 aa16.1■□□□□ 0.17
PRPF38A-202ENST00000474048 JPH4Q96JJ6 628 aa16.1■□□□□ 0.17
PRPF38A-202ENST00000474048 FMN1Q68DA7 1419 aa16.1■□□□□ 0.17
PRPF38A-202ENST00000474048 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
PRPF38A-202ENST00000474048 SHROOM2Q13796 1616 aa16.06■□□□□ 0.16
PRPF38A-202ENST00000474048 PRG4Q92954 1404 aaPredicted RBP16.05■□□□□ 0.16
PRPF38A-202ENST00000474048 TTBK1Q5TCY1 1321 aaPredicted RBP16.04■□□□□ 0.16
PRPF38A-202ENST00000474048 ATP1B4Q9UN42 357 aaPredicted RBP16.04■□□□□ 0.16
PRPF38A-202ENST00000474048 DISP1Q96F81 1524 aa16.04■□□□□ 0.16
PRPF38A-202ENST00000474048 PCF11O94913 1555 aaKnown RBP16.01■□□□□ 0.15
PRPF38A-202ENST00000474048 FYCO1Q9BQS8 1478 aa16.01■□□□□ 0.15
PRPF38A-202ENST00000474048 HECW1Q76N89 1606 aa16■□□□□ 0.15
PRPF38A-202ENST00000474048 CASKIN1Q8WXD9 1431 aa15.97■□□□□ 0.15
PRPF38A-202ENST00000474048 RAPGEF6Q8TEU7 1601 aa15.95■□□□□ 0.14
PRPF38A-202ENST00000474048 PTPRGP23470 1445 aa15.94■□□□□ 0.14
PRPF38A-202ENST00000474048 CCDC18Q5T9S5 1454 aa15.93■□□□□ 0.14
PRPF38A-202ENST00000474048 CFAP43Q8NDM7 1665 aa15.92■□□□□ 0.14
PRPF38A-202ENST00000474048 TIAM1Q13009 1591 aa15.9■□□□□ 0.14
PRPF38A-202ENST00000474048 ERCC6L2Q5T890 1561 aa15.88■□□□□ 0.13
PRPF38A-202ENST00000474048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.88■□□□□ 0.13
PRPF38A-202ENST00000474048 HNRNPUL2Q1KMD3 747 aaKnown RBP15.88■□□□□ 0.13
PRPF38A-202ENST00000474048 MAP3K1Q13233 1512 aa15.88■□□□□ 0.13
PRPF38A-202ENST00000474048 PLB1Q6P1J6 1458 aa15.85■□□□□ 0.13
PRPF38A-202ENST00000474048 ABCA8O94911 1581 aa15.85■□□□□ 0.13
PRPF38A-202ENST00000474048 PPARGC1BQ86YN6 1023 aaKnown RBP15.84■□□□□ 0.13
PRPF38A-202ENST00000474048 PHF23Q9BUL5 403 aaPredicted RBP15.84■□□□□ 0.13
PRPF38A-202ENST00000474048 CDK11AQ9UQ88 783 aaPredicted RBP15.84■□□□□ 0.13
PRPF38A-202ENST00000474048 UACAQ9BZF9 1416 aa15.84■□□□□ 0.13
PRPF38A-202ENST00000474048 EPRSP07814 1512 aaKnown RBP15.84■□□□□ 0.13
PRPF38A-202ENST00000474048 MTUS2Q5JR59 1369 aa15.83■□□□□ 0.12
PRPF38A-202ENST00000474048 ARHGEF11O15085 1522 aa15.82■□□□□ 0.12
PRPF38A-202ENST00000474048 ABCC2Q92887 1545 aa15.82■□□□□ 0.12
PRPF38A-202ENST00000474048 LRRIQ1Q96JM4 1722 aa15.82■□□□□ 0.12
PRPF38A-202ENST00000474048 ARID3CA6NKF2 412 aa15.81■□□□□ 0.12
PRPF38A-202ENST00000474048 NUP153P49790 1475 aaKnown RBP15.81■□□□□ 0.12
PRPF38A-202ENST00000474048 CDK13Q14004 1512 aaKnown RBP15.8■□□□□ 0.12
PRPF38A-202ENST00000474048 EHBP1L1Q8N3D4 1523 aa15.8■□□□□ 0.12
PRPF38A-202ENST00000474048 LRRC9Q6ZRR7 1453 aa15.79■□□□□ 0.12
PRPF38A-202ENST00000474048 RIMBP3CA6NJZ7 1639 aa15.78■□□□□ 0.12
PRPF38A-202ENST00000474048 RIMBP3BA6NNM3 1639 aa15.78■□□□□ 0.12
PRPF38A-202ENST00000474048 RIMBP3Q9UFD9 1639 aa15.78■□□□□ 0.12
PRPF38A-202ENST00000474048 SUPT6HQ7KZ85 1726 aaKnown RBP15.77■□□□□ 0.12
PRPF38A-202ENST00000474048 UHRF1BP1LA0JNW5 1464 aa15.76■□□□□ 0.11
PRPF38A-202ENST00000474048 NPM1P06748 294 aaKnown RBP eCLIP15.75■□□□□ 0.11
PRPF38A-202ENST00000474048 PLEKHD1A6NEE1 506 aa15.73■□□□□ 0.11
PRPF38A-202ENST00000474048 ZCCHC11Q5TAX3 1644 aaKnown RBP15.72■□□□□ 0.11
PRPF38A-202ENST00000474048 TRIM26Q12899 539 aaPredicted RBP15.72■□□□□ 0.11
PRPF38A-202ENST00000474048 KANK4Q5T7N3 995 aaPredicted RBP15.72■□□□□ 0.11
PRPF38A-202ENST00000474048 ADCY10Q96PN6 1610 aa15.72■□□□□ 0.11
PRPF38A-202ENST00000474048 ATP10BO94823 1461 aa15.71■□□□□ 0.1
PRPF38A-202ENST00000474048 KIF14Q15058 1648 aa15.7■□□□□ 0.1
PRPF38A-202ENST00000474048 TROQ12816 1431 aaPredicted RBP15.68■□□□□ 0.1
PRPF38A-202ENST00000474048 KDM5BQ9UGL1 1544 aa15.68■□□□□ 0.1
PRPF38A-202ENST00000474048 CYB5RLQ6IPT4 315 aa15.66■□□□□ 0.1
PRPF38A-202ENST00000474048 NCOA2Q15596 1464 aa15.65■□□□□ 0.1
PRPF38A-202ENST00000474048 MAGI3Q5TCQ9 1506 aa15.64■□□□□ 0.09
PRPF38A-202ENST00000474048 ITSN2Q9NZM3 1697 aa15.64■□□□□ 0.09
PRPF38A-202ENST00000474048 CCNB3Q8WWL7 1395 aa15.62■□□□□ 0.09
PRPF38A-202ENST00000474048 PCGF6Q9BYE7 350 aa15.61■□□□□ 0.09
PRPF38A-202ENST00000474048 SENP3Q9H4L4 574 aaPredicted RBP15.61■□□□□ 0.09
PRPF38A-202ENST00000474048 MYOM3Q5VTT5 1437 aa15.6■□□□□ 0.09
PRPF38A-202ENST00000474048 WDR7Q9Y4E6 1490 aa15.59■□□□□ 0.09
PRPF38A-202ENST00000474048 PHLDB1Q86UU1 1377 aa15.58■□□□□ 0.08
PRPF38A-202ENST00000474048 KCNH8Q96L42 1107 aa15.57■□□□□ 0.08
PRPF38A-202ENST00000474048 FAM50AQ14320 339 aaKnown RBP15.56■□□□□ 0.08
PRPF38A-202ENST00000474048 ASXL2Q76L83 1435 aa15.56■□□□□ 0.08
PRPF38A-202ENST00000474048 MYO5CQ9NQX4 1742 aa15.56■□□□□ 0.08
PRPF38A-202ENST00000474048 FGD6Q6ZV73 1430 aa15.55■□□□□ 0.08
PRPF38A-202ENST00000474048 RRBP1Q9P2E9 1410 aaKnown RBP15.55■□□□□ 0.08
PRPF38A-202ENST00000474048 PTPN23Q9H3S7 1636 aa15.54■□□□□ 0.08
PRPF38A-202ENST00000474048 MIA2Q96PC5 1412 aa15.53■□□□□ 0.08
PRPF38A-202ENST00000474048 MAPKBP1O60336 1514 aa15.53■□□□□ 0.08
PRPF38A-202ENST00000474048 CFDP1Q9UEE9 299 aaPredicted RBP15.52■□□□□ 0.08
PRPF38A-202ENST00000474048 CDC42BPAQ5VT25 1732 aa15.51■□□□□ 0.07
PRPF38A-202ENST00000474048 PREX2Q70Z35 1606 aa15.51■□□□□ 0.07
PRPF38A-202ENST00000474048 TTC37Q6PGP7 1564 aa15.5■□□□□ 0.07
PRPF38A-202ENST00000474048 ARHGAP5Q13017 1502 aa15.5■□□□□ 0.07
PRPF38A-202ENST00000474048 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.5■□□□□ 0.07
PRPF38A-202ENST00000474048 ABCC10Q5T3U5 1492 aa15.49■□□□□ 0.07
PRPF38A-202ENST00000474048 ZNF777Q9ULD5 760 aaPredicted RBP15.48■□□□□ 0.07
PRPF38A-202ENST00000474048 GPATCH8Q9UKJ3 1502 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms