RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 TARBP1Q13395 1621 aaKnown RBP19.93■□□□□ 0.78
SCAMP4-207ENST00000472442 APLP2Q06481 763 aa19.92■□□□□ 0.78
SCAMP4-207ENST00000472442 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
SCAMP4-207ENST00000472442 GAPVD1Q14C86 1478 aa19.91■□□□□ 0.78
SCAMP4-207ENST00000472442 KANK4Q5T7N3 995 aaPredicted RBP19.83■□□□□ 0.76
SCAMP4-207ENST00000472442 WDR62O43379 1518 aa19.8■□□□□ 0.76
SCAMP4-207ENST00000472442 CTTNBP2Q8WZ74 1663 aa19.79■□□□□ 0.76
SCAMP4-207ENST00000472442 AQRO60306 1485 aaKnown RBP eCLIP19.78■□□□□ 0.761e-6■■■■■ 33.8
SCAMP4-207ENST00000472442 P3H3Q8IVL6 736 aa19.75■□□□□ 0.75
SCAMP4-207ENST00000472442 PBRM1Q86U86 1689 aa19.74■□□□□ 0.75
SCAMP4-207ENST00000472442 FHOD3Q2V2M9 1422 aa19.72■□□□□ 0.75
SCAMP4-207ENST00000472442 ERCC6Q03468 1493 aa19.72■□□□□ 0.75
SCAMP4-207ENST00000472442 IFT140Q96RY7 1462 aa19.72■□□□□ 0.75
SCAMP4-207ENST00000472442 EFCAB5A4FU69 1503 aa19.71■□□□□ 0.75
SCAMP4-207ENST00000472442 ZNF608Q9ULD9 1512 aaPredicted RBP19.71■□□□□ 0.75
SCAMP4-207ENST00000472442 HNRNPUL2Q1KMD3 747 aaKnown RBP19.69■□□□□ 0.74
SCAMP4-207ENST00000472442 FHAD1B1AJZ9 1412 aa19.69■□□□□ 0.74
SCAMP4-207ENST00000472442 YTHDC1Q96MU7 727 aaKnown RBP19.68■□□□□ 0.74
SCAMP4-207ENST00000472442 THOC2Q8NI27 1593 aaKnown RBP19.68■□□□□ 0.74
SCAMP4-207ENST00000472442 ZNF316A6NFI3 1004 aaPredicted RBP19.68■□□□□ 0.74
SCAMP4-207ENST00000472442 MAP3K1Q13233 1512 aa19.68■□□□□ 0.74
SCAMP4-207ENST00000472442 TIAM1Q13009 1591 aa19.67■□□□□ 0.74
SCAMP4-207ENST00000472442 PCF11O94913 1555 aaKnown RBP19.67■□□□□ 0.74
SCAMP4-207ENST00000472442 GRIN2BQ13224 1484 aa19.67■□□□□ 0.74
SCAMP4-207ENST00000472442 ADAMTS12P58397 1594 aa19.66■□□□□ 0.74
SCAMP4-207ENST00000472442 SAMD9Q5K651 1589 aa19.63■□□□□ 0.73
SCAMP4-207ENST00000472442 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
SCAMP4-207ENST00000472442 LRRC9Q6ZRR7 1453 aa19.6■□□□□ 0.73
SCAMP4-207ENST00000472442 CASKIN1Q8WXD9 1431 aa19.59■□□□□ 0.73
SCAMP4-207ENST00000472442 FYCO1Q9BQS8 1478 aa19.59■□□□□ 0.73
SCAMP4-207ENST00000472442 EIF4G3O43432 1585 aaKnown RBP19.58■□□□□ 0.73
SCAMP4-207ENST00000472442 CFAP43Q8NDM7 1665 aa19.58■□□□□ 0.73
SCAMP4-207ENST00000472442 FMN1Q68DA7 1419 aa19.56■□□□□ 0.72
SCAMP4-207ENST00000472442 SNAPC4Q5SXM2 1469 aa19.56■□□□□ 0.72
SCAMP4-207ENST00000472442 ATP1B4Q9UN42 357 aaPredicted RBP19.56■□□□□ 0.72
SCAMP4-207ENST00000472442 CCNB3Q8WWL7 1395 aa19.53■□□□□ 0.72
SCAMP4-207ENST00000472442 IQGAP2Q13576 1575 aa19.52■□□□□ 0.72
SCAMP4-207ENST00000472442 MIER1Q8N108 512 aa19.52■□□□□ 0.72
SCAMP4-207ENST00000472442 PHLDB1Q86UU1 1377 aa19.5■□□□□ 0.71
SCAMP4-207ENST00000472442 LRRIQ1Q96JM4 1722 aa19.47■□□□□ 0.71
SCAMP4-207ENST00000472442 GRIN2AQ12879 1464 aa19.46■□□□□ 0.71
SCAMP4-207ENST00000472442 MAGI1Q96QZ7 1491 aaPredicted RBP19.44■□□□□ 0.7
SCAMP4-207ENST00000472442 UGGT2Q9NYU1 1516 aa19.43■□□□□ 0.7
SCAMP4-207ENST00000472442 KIAA0586Q9BVV6 1533 aa19.43■□□□□ 0.7
SCAMP4-207ENST00000472442 SYNJ2O15056 1496 aa19.39■□□□□ 0.7
SCAMP4-207ENST00000472442 ITGAEP38570 1179 aa19.38■□□□□ 0.69
SCAMP4-207ENST00000472442 DISP1Q96F81 1524 aa19.37■□□□□ 0.69
SCAMP4-207ENST00000472442 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
SCAMP4-207ENST00000472442 CEP170Q5SW79 1584 aa19.35■□□□□ 0.69
SCAMP4-207ENST00000472442 MTUS2Q5JR59 1369 aa19.35■□□□□ 0.69
SCAMP4-207ENST00000472442 KIAA0556O60303 1618 aa19.33■□□□□ 0.69
SCAMP4-207ENST00000472442 DHX57Q6P158 1386 aaKnown RBP19.33■□□□□ 0.68
SCAMP4-207ENST00000472442 MAGI3Q5TCQ9 1506 aa19.32■□□□□ 0.68
SCAMP4-207ENST00000472442 FBLN2P98095 1184 aa19.32■□□□□ 0.68
SCAMP4-207ENST00000472442 FAM50AQ14320 339 aaKnown RBP19.32■□□□□ 0.68
SCAMP4-207ENST00000472442 HECW1Q76N89 1606 aa19.31■□□□□ 0.68
SCAMP4-207ENST00000472442 CCDC18Q5T9S5 1454 aa19.3■□□□□ 0.68
SCAMP4-207ENST00000472442 NUP160Q12769 1436 aa19.29■□□□□ 0.68
SCAMP4-207ENST00000472442 EPRSP07814 1512 aaKnown RBP19.29■□□□□ 0.68
SCAMP4-207ENST00000472442 NCOA2Q15596 1464 aa19.28■□□□□ 0.68
SCAMP4-207ENST00000472442 EHBP1L1Q8N3D4 1523 aa19.28■□□□□ 0.68
SCAMP4-207ENST00000472442 FGD6Q6ZV73 1430 aa19.28■□□□□ 0.68
SCAMP4-207ENST00000472442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.27■□□□□ 0.68
SCAMP4-207ENST00000472442 CDK13Q14004 1512 aaKnown RBP19.26■□□□□ 0.67
SCAMP4-207ENST00000472442 SUPT6HQ7KZ85 1726 aaKnown RBP19.25■□□□□ 0.67
SCAMP4-207ENST00000472442 RAB3GAP2Q9H2M9 1393 aa19.25■□□□□ 0.67
SCAMP4-207ENST00000472442 ARHGEF11O15085 1522 aa19.24■□□□□ 0.67
SCAMP4-207ENST00000472442 CLSPNQ9HAW4 1339 aa19.23■□□□□ 0.67
SCAMP4-207ENST00000472442 MYOM3Q5VTT5 1437 aa19.22■□□□□ 0.67
SCAMP4-207ENST00000472442 ARID3CA6NKF2 412 aa19.22■□□□□ 0.67
SCAMP4-207ENST00000472442 SETD5Q9C0A6 1442 aa19.21■□□□□ 0.67
SCAMP4-207ENST00000472442 JPH4Q96JJ6 628 aa19.21■□□□□ 0.67
SCAMP4-207ENST00000472442 NUP153P49790 1475 aaKnown RBP19.2■□□□□ 0.66
SCAMP4-207ENST00000472442 RAPGEF6Q8TEU7 1601 aa19.18■□□□□ 0.66
SCAMP4-207ENST00000472442 SUPT16HQ9Y5B9 1047 aaKnown RBP19.17■□□□□ 0.66
SCAMP4-207ENST00000472442 PTPRKQ15262 1439 aa19.16■□□□□ 0.66
SCAMP4-207ENST00000472442 PLB1Q6P1J6 1458 aa19.14■□□□□ 0.65
SCAMP4-207ENST00000472442 CARMIL2Q6F5E8 1435 aa19.13■□□□□ 0.65
SCAMP4-207ENST00000472442 PTPN23Q9H3S7 1636 aa19.12■□□□□ 0.65
SCAMP4-207ENST00000472442 MAPKBP1O60336 1514 aa19.11■□□□□ 0.65
SCAMP4-207ENST00000472442 TCOF1Q13428 1488 aaKnown RBP19.09■□□□□ 0.65
SCAMP4-207ENST00000472442 CHD1O14646 1710 aa19.09■□□□□ 0.65
SCAMP4-207ENST00000472442 HFM1A2PYH4 1435 aa19.05■□□□□ 0.64
SCAMP4-207ENST00000472442 MIA2Q96PC5 1412 aa19.05■□□□□ 0.64
SCAMP4-207ENST00000472442 PRG4Q92954 1404 aaPredicted RBP19.03■□□□□ 0.64
SCAMP4-207ENST00000472442 ABCA8O94911 1581 aa19.03■□□□□ 0.64
SCAMP4-207ENST00000472442 TSHZ2Q9NRE2 1034 aa19.02■□□□□ 0.64
SCAMP4-207ENST00000472442 CDK11AQ9UQ88 783 aaPredicted RBP19.02■□□□□ 0.64
SCAMP4-207ENST00000472442 NAIPQ13075 1403 aa19.01■□□□□ 0.63
SCAMP4-207ENST00000472442 TROQ12816 1431 aaPredicted RBP19■□□□□ 0.63
SCAMP4-207ENST00000472442 ANP32EQ9BTT0 268 aa18.96■□□□□ 0.63
SCAMP4-207ENST00000472442 SHROOM2Q13796 1616 aa18.96■□□□□ 0.63
SCAMP4-207ENST00000472442 ATP10BO94823 1461 aa18.96■□□□□ 0.63
SCAMP4-207ENST00000472442 CHIC2Q9UKJ5 165 aa18.95■□□□□ 0.62
SCAMP4-207ENST00000472442 KIF14Q15058 1648 aa18.95■□□□□ 0.62
SCAMP4-207ENST00000472442 PTPRGP23470 1445 aa18.95■□□□□ 0.62
SCAMP4-207ENST00000472442 ZNF644Q9H582 1327 aaPredicted RBP18.94■□□□□ 0.62
SCAMP4-207ENST00000472442 ADCY10Q96PN6 1610 aa18.94■□□□□ 0.62
SCAMP4-207ENST00000472442 SIN3AQ96ST3 1273 aa18.93■□□□□ 0.62
SCAMP4-207ENST00000472442 RRP7BPQ9NSQ0 103 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms