RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NUP160Q12769 1436 aa24.51■■□□□ 1.51
COL9A3-209ENST00000469852 KIF21BO75037 1637 aa24.48■■□□□ 1.51
COL9A3-209ENST00000469852 CLASP1Q7Z460 1538 aa24.48■■□□□ 1.51
COL9A3-209ENST00000469852 CYB5RLQ6IPT4 315 aa24.4■■□□□ 1.5
COL9A3-209ENST00000469852 EHMT2Q96KQ7 1210 aa24.39■■□□□ 1.49
COL9A3-209ENST00000469852 ARAP1Q96P48 1450 aa24.37■■□□□ 1.49
COL9A3-209ENST00000469852 CTTNBP2Q8WZ74 1663 aa24.36■■□□□ 1.49
COL9A3-209ENST00000469852 KIAA0586Q9BVV6 1533 aa24.35■■□□□ 1.49
COL9A3-209ENST00000469852 GOLGA3Q08378 1498 aa24.34■■□□□ 1.49
COL9A3-209ENST00000469852 SHROOM2Q13796 1616 aa24.31■■□□□ 1.48
COL9A3-209ENST00000469852 IQGAP2Q13576 1575 aa24.3■■□□□ 1.48
COL9A3-209ENST00000469852 ERCC6L2Q5T890 1561 aa24.25■■□□□ 1.47
COL9A3-209ENST00000469852 JPH4Q96JJ6 628 aa24.23■■□□□ 1.47
COL9A3-209ENST00000469852 UBTFP17480 764 aaKnown RBP24.21■■□□□ 1.47
COL9A3-209ENST00000469852 PRG4Q92954 1404 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-209ENST00000469852 UGGT2Q9NYU1 1516 aa24.18■■□□□ 1.46
COL9A3-209ENST00000469852 LOC105371045A0A1W2PR82 267 aa24.17■■□□□ 1.46
COL9A3-209ENST00000469852 TRHP20396 242 aaPredicted RBP24.13■■□□□ 1.45
COL9A3-209ENST00000469852 DISP1Q96F81 1524 aa24.13■■□□□ 1.45
COL9A3-209ENST00000469852 RANGAP1P46060 587 aaPredicted RBP24.1■■□□□ 1.45
COL9A3-209ENST00000469852 KIAA0556O60303 1618 aa24.1■■□□□ 1.45
COL9A3-209ENST00000469852 TNIKQ9UKE5 1360 aa24.09■■□□□ 1.45
COL9A3-209ENST00000469852 SAMD9Q5K651 1589 aa24.07■■□□□ 1.44
COL9A3-209ENST00000469852 CARMIL2Q6F5E8 1435 aa24.03■■□□□ 1.44
COL9A3-209ENST00000469852 P3H3Q8IVL6 736 aa23.99■■□□□ 1.43
COL9A3-209ENST00000469852 EFCAB5A4FU69 1503 aa23.97■■□□□ 1.43
COL9A3-209ENST00000469852 ARHGAP35Q9NRY4 1499 aa23.97■■□□□ 1.43
COL9A3-209ENST00000469852 TTBK1Q5TCY1 1321 aaPredicted RBP23.95■■□□□ 1.42
COL9A3-209ENST00000469852 FHOD3Q2V2M9 1422 aa23.94■■□□□ 1.42
COL9A3-209ENST00000469852 CEP162Q5TB80 1403 aa23.93■■□□□ 1.42
COL9A3-209ENST00000469852 CLIP1P30622 1438 aa23.92■■□□□ 1.42
COL9A3-209ENST00000469852 PTPRGP23470 1445 aa23.91■■□□□ 1.42
COL9A3-209ENST00000469852 PLB1Q6P1J6 1458 aa23.82■■□□□ 1.4
COL9A3-209ENST00000469852 ADCY10Q96PN6 1610 aa23.82■■□□□ 1.4
COL9A3-209ENST00000469852 ABCA8O94911 1581 aa23.8■■□□□ 1.4
COL9A3-209ENST00000469852 UACAQ9BZF9 1416 aa23.77■■□□□ 1.4
COL9A3-209ENST00000469852 ABCC2Q92887 1545 aa23.75■■□□□ 1.39
COL9A3-209ENST00000469852 RAPGEF6Q8TEU7 1601 aa23.74■■□□□ 1.39
COL9A3-209ENST00000469852 UHRF1BP1LA0JNW5 1464 aa23.74■■□□□ 1.39
COL9A3-209ENST00000469852 FMN1Q68DA7 1419 aa23.72■■□□□ 1.39
COL9A3-209ENST00000469852 PCF11O94913 1555 aaKnown RBP23.69■■□□□ 1.38
COL9A3-209ENST00000469852 NUP153P49790 1475 aaKnown RBP23.67■■□□□ 1.38
COL9A3-209ENST00000469852 ZCCHC11Q5TAX3 1644 aaKnown RBP23.64■■□□□ 1.38
COL9A3-209ENST00000469852 LRRIQ1Q96JM4 1722 aa23.64■■□□□ 1.37
COL9A3-209ENST00000469852 KDM5BQ9UGL1 1544 aa23.64■■□□□ 1.37
COL9A3-209ENST00000469852 ARID3CA6NKF2 412 aa23.63■■□□□ 1.37
COL9A3-209ENST00000469852 HECW1Q76N89 1606 aa23.62■■□□□ 1.37
COL9A3-209ENST00000469852 CASKIN1Q8WXD9 1431 aa23.61■■□□□ 1.37
COL9A3-209ENST00000469852 ATP10BO94823 1461 aa23.59■■□□□ 1.37
COL9A3-209ENST00000469852 VPS8Q8N3P4 1428 aa23.59■■□□□ 1.37
COL9A3-209ENST00000469852 FYCO1Q9BQS8 1478 aa23.58■■□□□ 1.37
COL9A3-209ENST00000469852 ATP1B4Q9UN42 357 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-209ENST00000469852 CDK13Q14004 1512 aaKnown RBP23.57■■□□□ 1.36
COL9A3-209ENST00000469852 EPRSP07814 1512 aaKnown RBP23.54■■□□□ 1.36
COL9A3-209ENST00000469852 NPM1P06748 294 aaKnown RBP eCLIP23.54■■□□□ 1.36
COL9A3-209ENST00000469852 KIF13AQ9H1H9 1805 aa23.53■■□□□ 1.36
COL9A3-209ENST00000469852 MAPKBP1O60336 1514 aa23.53■■□□□ 1.36
COL9A3-209ENST00000469852 ASXL2Q76L83 1435 aa23.5■■□□□ 1.35
COL9A3-209ENST00000469852 AEBP2Q6ZN18 517 aaPredicted RBP23.48■■□□□ 1.35
COL9A3-209ENST00000469852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-209ENST00000469852 HNRNPUL2Q1KMD3 747 aaKnown RBP23.46■■□□□ 1.35
COL9A3-209ENST00000469852 CCDC18Q5T9S5 1454 aa23.45■■□□□ 1.34
COL9A3-209ENST00000469852 WDR7Q9Y4E6 1490 aa23.43■■□□□ 1.34
COL9A3-209ENST00000469852 MAGI3Q5TCQ9 1506 aa23.42■■□□□ 1.34
COL9A3-209ENST00000469852 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
COL9A3-209ENST00000469852 ABCC10Q5T3U5 1492 aa23.4■■□□□ 1.34
COL9A3-209ENST00000469852 DIP2BQ9P265 1576 aa23.4■■□□□ 1.34
COL9A3-209ENST00000469852 TIAM1Q13009 1591 aa23.38■■□□□ 1.33
COL9A3-209ENST00000469852 FAM69CQ0P6D2 419 aa23.36■■□□□ 1.33
COL9A3-209ENST00000469852 PLEKHD1A6NEE1 506 aa23.34■■□□□ 1.33
COL9A3-209ENST00000469852 KCNH8Q96L42 1107 aa23.33■■□□□ 1.33
COL9A3-209ENST00000469852 TROQ12816 1431 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-209ENST00000469852 KIF14Q15058 1648 aa23.31■■□□□ 1.32
COL9A3-209ENST00000469852 MAP3K1Q13233 1512 aa23.31■■□□□ 1.32
COL9A3-209ENST00000469852 GLI2P10070 1586 aa23.29■■□□□ 1.32
COL9A3-209ENST00000469852 CDK11AQ9UQ88 783 aaPredicted RBP23.29■■□□□ 1.32
COL9A3-209ENST00000469852 KANK4Q5T7N3 995 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-209ENST00000469852 EHBP1L1Q8N3D4 1523 aa23.26■■□□□ 1.31
COL9A3-209ENST00000469852 TTC37Q6PGP7 1564 aa23.26■■□□□ 1.31
COL9A3-209ENST00000469852 LRRC9Q6ZRR7 1453 aa23.25■■□□□ 1.31
COL9A3-209ENST00000469852 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.25■■□□□ 1.31
COL9A3-209ENST00000469852 ABCA9Q8IUA7 1624 aa23.25■■□□□ 1.31
COL9A3-209ENST00000469852 MAP3K4Q9Y6R4 1608 aa23.25■■□□□ 1.31
COL9A3-209ENST00000469852 MTUS2Q5JR59 1369 aa23.25■■□□□ 1.31
COL9A3-209ENST00000469852 TSPOAP1O95153 1857 aa23.2■■□□□ 1.3
COL9A3-209ENST00000469852 PPRC1Q5VV67 1664 aaKnown RBP23.2■■□□□ 1.3
COL9A3-209ENST00000469852 APLP2Q06481 763 aa23.2■■□□□ 1.3
COL9A3-209ENST00000469852 SUPT6HQ7KZ85 1726 aaKnown RBP23.16■■□□□ 1.3
COL9A3-209ENST00000469852 CD109Q6YHK3 1445 aa23.16■■□□□ 1.3
COL9A3-209ENST00000469852 KDM6BO15054 1643 aa23.14■■□□□ 1.29
COL9A3-209ENST00000469852 NCOA2Q15596 1464 aa23.13■■□□□ 1.29
COL9A3-209ENST00000469852 PPARGC1BQ86YN6 1023 aaKnown RBP23.13■■□□□ 1.29
COL9A3-209ENST00000469852 CDC42BPAQ5VT25 1732 aa23.12■■□□□ 1.29
COL9A3-209ENST00000469852 MYO5CQ9NQX4 1742 aa23.12■■□□□ 1.29
COL9A3-209ENST00000469852 PREX2Q70Z35 1606 aa23.09■■□□□ 1.29
COL9A3-209ENST00000469852 CDC42BPBQ9Y5S2 1711 aa23.09■■□□□ 1.29
COL9A3-209ENST00000469852 GPATCH8Q9UKJ3 1502 aaKnown RBP23.07■■□□□ 1.28
COL9A3-209ENST00000469852 PLCH2O75038 1416 aa23.07■■□□□ 1.28
COL9A3-209ENST00000469852 CCNB3Q8WWL7 1395 aa23.04■■□□□ 1.28
COL9A3-209ENST00000469852 KDM4FA0A1W2PPD8 638 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms