RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 MIER1Q8N108 512 aa28.19■■■□□ 2.1
VIM-203ENST00000469543 URB2Q14146 1524 aaKnown RBP28.18■■■□□ 2.1
VIM-203ENST00000469543 YTHDC1Q96MU7 727 aaKnown RBP28.18■■■□□ 2.1
VIM-203ENST00000469543 TIAM1Q13009 1591 aa28.14■■■□□ 2.1
VIM-203ENST00000469543 PHLDB1Q86UU1 1377 aa28.14■■■□□ 2.09
VIM-203ENST00000469543 FAM50AQ14320 339 aaKnown RBP28.14■■■□□ 2.09
VIM-203ENST00000469543 LRRC9Q6ZRR7 1453 aa28.1■■■□□ 2.09
VIM-203ENST00000469543 PCF11O94913 1555 aaKnown RBP28.05■■■□□ 2.08
VIM-203ENST00000469543 RAB3GAP2Q9H2M9 1393 aa28.04■■■□□ 2.08
VIM-203ENST00000469543 LAMC3Q9Y6N6 1575 aa28.03■■■□□ 2.08
VIM-203ENST00000469543 FHAD1B1AJZ9 1412 aa28.03■■■□□ 2.08
VIM-203ENST00000469543 CLSPNQ9HAW4 1339 aa28.01■■■□□ 2.07
VIM-203ENST00000469543 GTF3C3Q9Y5Q9 886 aa28■■■□□ 2.07
VIM-203ENST00000469543 CENPBP07199 599 aaPredicted RBP27.98■■■□□ 2.07
VIM-203ENST00000469543 PDS5BQ9NTI5 1447 aa27.96■■■□□ 2.07
VIM-203ENST00000469543 MAP3K1Q13233 1512 aa27.95■■■□□ 2.07
VIM-203ENST00000469543 GAPVD1Q14C86 1478 aa27.94■■■□□ 2.06
VIM-203ENST00000469543 KIF21AQ7Z4S6 1674 aa27.9■■■□□ 2.06
VIM-203ENST00000469543 CUL7Q14999 1698 aa27.89■■■□□ 2.06
VIM-203ENST00000469543 SIN3AQ96ST3 1273 aa27.88■■■□□ 2.05
VIM-203ENST00000469543 CASKIN1Q8WXD9 1431 aa27.87■■■□□ 2.05
VIM-203ENST00000469543 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
VIM-203ENST00000469543 SETD5Q9C0A6 1442 aa27.86■■■□□ 2.05
VIM-203ENST00000469543 CTTNBP2Q8WZ74 1663 aa27.84■■■□□ 2.05
VIM-203ENST00000469543 ABCA5Q8WWZ7 1642 aa27.83■■■□□ 2.05
VIM-203ENST00000469543 FYCO1Q9BQS8 1478 aa27.83■■■□□ 2.05
VIM-203ENST00000469543 CFAP43Q8NDM7 1665 aa27.82■■■□□ 2.04
VIM-203ENST00000469543 EFCAB5A4FU69 1503 aa27.81■■■□□ 2.04
VIM-203ENST00000469543 AQRO60306 1485 aaKnown RBP eCLIP27.81■■■□□ 2.042e-7■■■■□ 24.2
VIM-203ENST00000469543 MAPKBP1O60336 1514 aa27.81■■■□□ 2.04
VIM-203ENST00000469543 ARID3CA6NKF2 412 aa27.79■■■□□ 2.04
VIM-203ENST00000469543 FMN1Q68DA7 1419 aa27.77■■■□□ 2.04
VIM-203ENST00000469543 SNAPC4Q5SXM2 1469 aa27.76■■■□□ 2.03
VIM-203ENST00000469543 MTUS2Q5JR59 1369 aa27.76■■■□□ 2.03
VIM-203ENST00000469543 TARBP1Q13395 1621 aaKnown RBP27.71■■■□□ 2.03
VIM-203ENST00000469543 LRRIQ1Q96JM4 1722 aa27.66■■■□□ 2.02
VIM-203ENST00000469543 FGD6Q6ZV73 1430 aa27.66■■■□□ 2.02
VIM-203ENST00000469543 PTPRKQ15262 1439 aa27.65■■■□□ 2.02
VIM-203ENST00000469543 SAMD9Q5K651 1589 aa27.64■■■□□ 2.02
VIM-203ENST00000469543 HIRIP3Q9BW71 556 aaPredicted RBP27.64■■■□□ 2.02
VIM-203ENST00000469543 GRIN2BQ13224 1484 aa27.59■■■□□ 2.01
VIM-203ENST00000469543 ZNF608Q9ULD9 1512 aaPredicted RBP27.59■■■□□ 2.01
VIM-203ENST00000469543 NCOA2Q15596 1464 aa27.58■■■□□ 2
VIM-203ENST00000469543 CHIC2Q9UKJ5 165 aa27.56■■■□□ 2
VIM-203ENST00000469543 MAGI3Q5TCQ9 1506 aa27.53■■■□□ 2
VIM-203ENST00000469543 KCNH8Q96L42 1107 aa27.53■■■□□ 2
VIM-203ENST00000469543 MRC2Q9UBG0 1479 aa27.52■■■□□ 2
VIM-203ENST00000469543 RRP7BPQ9NSQ0 103 aa27.5■■□□□ 1.99
VIM-203ENST00000469543 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.5■■□□□ 1.99
VIM-203ENST00000469543 PBRM1Q86U86 1689 aa27.49■■□□□ 1.99
VIM-203ENST00000469543 MYOM3Q5VTT5 1437 aa27.48■■□□□ 1.99
VIM-203ENST00000469543 DDX10Q13206 875 aaKnown RBP27.46■■□□□ 1.99
VIM-203ENST00000469543 CCDC18Q5T9S5 1454 aa27.44■■□□□ 1.98
VIM-203ENST00000469543 PPP1R15AO75807 674 aaPredicted RBP27.43■■□□□ 1.98
VIM-203ENST00000469543 CDK13Q14004 1512 aaKnown RBP27.43■■□□□ 1.98
VIM-203ENST00000469543 IQGAP2Q13576 1575 aa27.42■■□□□ 1.98
VIM-203ENST00000469543 ADAMTS12P58397 1594 aa27.41■■□□□ 1.98
VIM-203ENST00000469543 NAIPQ13075 1403 aa27.4■■□□□ 1.98
VIM-203ENST00000469543 HFM1A2PYH4 1435 aa27.39■■□□□ 1.98
VIM-203ENST00000469543 SUPT6HQ7KZ85 1726 aaKnown RBP27.37■■□□□ 1.97
VIM-203ENST00000469543 FBLN2P98095 1184 aa27.37■■□□□ 1.97
VIM-203ENST00000469543 EPRSP07814 1512 aaKnown RBP27.37■■□□□ 1.97
VIM-203ENST00000469543 EHBP1L1Q8N3D4 1523 aa27.35■■□□□ 1.97
VIM-203ENST00000469543 UGGT2Q9NYU1 1516 aa27.35■■□□□ 1.97
VIM-203ENST00000469543 PTPN23Q9H3S7 1636 aa27.34■■□□□ 1.97
VIM-203ENST00000469543 IFT140Q96RY7 1462 aa27.31■■□□□ 1.96
VIM-203ENST00000469543 UACAQ9BZF9 1416 aa27.31■■□□□ 1.96
VIM-203ENST00000469543 TRIM52Q96A61 297 aa27.3■■□□□ 1.96
VIM-203ENST00000469543 THOC2Q8NI27 1593 aaKnown RBP27.3■■□□□ 1.96
VIM-203ENST00000469543 TONSLQ96HA7 1378 aa27.3■■□□□ 1.96
VIM-203ENST00000469543 ZNF644Q9H582 1327 aaPredicted RBP27.29■■□□□ 1.96
VIM-203ENST00000469543 ARHGEF11O15085 1522 aa27.28■■□□□ 1.96
VIM-203ENST00000469543 FOXD1Q16676 465 aa27.27■■□□□ 1.96
VIM-203ENST00000469543 TIMELESSQ9UNS1 1208 aa27.27■■□□□ 1.96
VIM-203ENST00000469543 ERCC6Q03468 1493 aa27.26■■□□□ 1.95
VIM-203ENST00000469543 HECW1Q76N89 1606 aa27.26■■□□□ 1.95
VIM-203ENST00000469543 WDR62O43379 1518 aa27.25■■□□□ 1.95
VIM-203ENST00000469543 CHMP7Q8WUX9 453 aaPredicted RBP27.24■■□□□ 1.95
VIM-203ENST00000469543 DISP1Q96F81 1524 aa27.23■■□□□ 1.95
VIM-203ENST00000469543 KDM6BO15054 1643 aa27.2■■□□□ 1.94
VIM-203ENST00000469543 KIAA0586Q9BVV6 1533 aa27.2■■□□□ 1.94
VIM-203ENST00000469543 GRIN2AQ12879 1464 aa27.18■■□□□ 1.94
VIM-203ENST00000469543 EIF4G3O43432 1585 aaKnown RBP27.18■■□□□ 1.94
VIM-203ENST00000469543 DENND4BO75064 1496 aaPredicted RBP27.15■■□□□ 1.94
VIM-203ENST00000469543 NUP153P49790 1475 aaKnown RBP27.14■■□□□ 1.94
VIM-203ENST00000469543 TCOF1Q13428 1488 aaKnown RBP27.13■■□□□ 1.93
VIM-203ENST00000469543 MPHOSPH9Q99550 1183 aa27.13■■□□□ 1.93
VIM-203ENST00000469543 KIAA0556O60303 1618 aa27.12■■□□□ 1.93
VIM-203ENST00000469543 PRG4Q92954 1404 aaPredicted RBP27.09■■□□□ 1.93
VIM-203ENST00000469543 PELP1Q8IZL8 1130 aaKnown RBP27.09■■□□□ 1.93
VIM-203ENST00000469543 PLB1Q6P1J6 1458 aa27.09■■□□□ 1.93
VIM-203ENST00000469543 ZNF777Q9ULD5 760 aaPredicted RBP27.08■■□□□ 1.93
VIM-203ENST00000469543 MIA2Q96PC5 1412 aa27.07■■□□□ 1.92
VIM-203ENST00000469543 JPH4Q96JJ6 628 aa27.06■■□□□ 1.92
VIM-203ENST00000469543 KDM5BQ9UGL1 1544 aa27.03■■□□□ 1.92
VIM-203ENST00000469543 CEP170Q5SW79 1584 aa27.03■■□□□ 1.92
VIM-203ENST00000469543 CDK11AQ9UQ88 783 aaPredicted RBP27.02■■□□□ 1.92
VIM-203ENST00000469543 ABCC5O15440 1437 aa27.01■■□□□ 1.91
VIM-203ENST00000469543 DAPK1P53355 1430 aa27■■□□□ 1.91
VIM-203ENST00000469543 L3MBTL2Q969R5 705 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms