RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 CEP170Q5SW79 1584 aa20.81■□□□□ 0.92
COL4A1-202ENST00000467182 NUP160Q12769 1436 aa20.78■□□□□ 0.92
COL4A1-202ENST00000467182 ARHGAP35Q9NRY4 1499 aa20.78■□□□□ 0.92
COL4A1-202ENST00000467182 CHMP7Q8WUX9 453 aaPredicted RBP20.78■□□□□ 0.92
COL4A1-202ENST00000467182 IQGAP2Q13576 1575 aa20.76■□□□□ 0.91
COL4A1-202ENST00000467182 ARAP1Q96P48 1450 aa20.75■□□□□ 0.91
COL4A1-202ENST00000467182 KIAA0586Q9BVV6 1533 aa20.75■□□□□ 0.91
COL4A1-202ENST00000467182 SAMD9Q5K651 1589 aa20.73■□□□□ 0.91
COL4A1-202ENST00000467182 RANGAP1P46060 587 aaPredicted RBP20.73■□□□□ 0.91
COL4A1-202ENST00000467182 EFCAB5A4FU69 1503 aa20.72■□□□□ 0.91
COL4A1-202ENST00000467182 FBLN2P98095 1184 aa20.71■□□□□ 0.91
COL4A1-202ENST00000467182 UGGT2Q9NYU1 1516 aa20.69■□□□□ 0.9
COL4A1-202ENST00000467182 VPS8Q8N3P4 1428 aa20.66■□□□□ 0.9
COL4A1-202ENST00000467182 CLASP1Q7Z460 1538 aa20.6■□□□□ 0.89
COL4A1-202ENST00000467182 DISP1Q96F81 1524 aa20.6■□□□□ 0.89
COL4A1-202ENST00000467182 FHOD3Q2V2M9 1422 aa20.6■□□□□ 0.89
COL4A1-202ENST00000467182 KIAA0556O60303 1618 aa20.59■□□□□ 0.89
COL4A1-202ENST00000467182 SHROOM2Q13796 1616 aa20.58■□□□□ 0.89
COL4A1-202ENST00000467182 P3H3Q8IVL6 736 aa20.55■□□□□ 0.88
COL4A1-202ENST00000467182 JPH4Q96JJ6 628 aa20.53■□□□□ 0.88
COL4A1-202ENST00000467182 PCF11O94913 1555 aaKnown RBP20.51■□□□□ 0.87
COL4A1-202ENST00000467182 FMN1Q68DA7 1419 aa20.47■□□□□ 0.87
COL4A1-202ENST00000467182 CASKIN1Q8WXD9 1431 aa20.44■□□□□ 0.86
COL4A1-202ENST00000467182 PRG4Q92954 1404 aaPredicted RBP20.44■□□□□ 0.86
COL4A1-202ENST00000467182 CARMIL2Q6F5E8 1435 aa20.44■□□□□ 0.86
COL4A1-202ENST00000467182 FYCO1Q9BQS8 1478 aa20.43■□□□□ 0.86
COL4A1-202ENST00000467182 ERCC6L2Q5T890 1561 aa20.42■□□□□ 0.86
COL4A1-202ENST00000467182 LRRIQ1Q96JM4 1722 aa20.41■□□□□ 0.86
COL4A1-202ENST00000467182 MAP3K1Q13233 1512 aa20.39■□□□□ 0.85
COL4A1-202ENST00000467182 CFAP43Q8NDM7 1665 aa20.38■□□□□ 0.85
COL4A1-202ENST00000467182 OSCARQ8IYS5 282 aa20.37■□□□□ 0.85
COL4A1-202ENST00000467182 TIAM1Q13009 1591 aa20.37■□□□□ 0.85
COL4A1-202ENST00000467182 HECW1Q76N89 1606 aa20.35■□□□□ 0.85
COL4A1-202ENST00000467182 RAPGEF6Q8TEU7 1601 aa20.35■□□□□ 0.85
COL4A1-202ENST00000467182 PPARGC1BQ86YN6 1023 aaKnown RBP20.33■□□□□ 0.85
COL4A1-202ENST00000467182 ABCA8O94911 1581 aa20.32■□□□□ 0.84
COL4A1-202ENST00000467182 PLB1Q6P1J6 1458 aa20.3■□□□□ 0.84
COL4A1-202ENST00000467182 NUP153P49790 1475 aaKnown RBP20.28■□□□□ 0.84
COL4A1-202ENST00000467182 APLP2Q06481 763 aa20.27■□□□□ 0.84
COL4A1-202ENST00000467182 KANK4Q5T7N3 995 aaPredicted RBP20.27■□□□□ 0.84
COL4A1-202ENST00000467182 EPRSP07814 1512 aaKnown RBP20.27■□□□□ 0.83
COL4A1-202ENST00000467182 PTPRGP23470 1445 aa20.27■□□□□ 0.83
COL4A1-202ENST00000467182 CCDC18Q5T9S5 1454 aa20.25■□□□□ 0.83
COL4A1-202ENST00000467182 TTBK1Q5TCY1 1321 aaPredicted RBP20.25■□□□□ 0.83
COL4A1-202ENST00000467182 LRRC9Q6ZRR7 1453 aa20.24■□□□□ 0.83
COL4A1-202ENST00000467182 ATP1B4Q9UN42 357 aaPredicted RBP20.23■□□□□ 0.83
COL4A1-202ENST00000467182 CDK13Q14004 1512 aaKnown RBP20.22■□□□□ 0.83
COL4A1-202ENST00000467182 MAGI3Q5TCQ9 1506 aa20.2■□□□□ 0.82
COL4A1-202ENST00000467182 UACAQ9BZF9 1416 aa20.19■□□□□ 0.82
COL4A1-202ENST00000467182 ABCC2Q92887 1545 aa20.17■□□□□ 0.82
COL4A1-202ENST00000467182 TRIM26Q12899 539 aaPredicted RBP20.15■□□□□ 0.82
COL4A1-202ENST00000467182 UHRF1BP1LA0JNW5 1464 aa20.15■□□□□ 0.82
COL4A1-202ENST00000467182 EHBP1L1Q8N3D4 1523 aa20.14■□□□□ 0.81
COL4A1-202ENST00000467182 ATP10BO94823 1461 aa20.13■□□□□ 0.81
COL4A1-202ENST00000467182 ARHGEF11O15085 1522 aa20.12■□□□□ 0.81
COL4A1-202ENST00000467182 ARID3CA6NKF2 412 aa20.1■□□□□ 0.81
COL4A1-202ENST00000467182 ADCY10Q96PN6 1610 aa20.09■□□□□ 0.81
COL4A1-202ENST00000467182 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.81
COL4A1-202ENST00000467182 SUPT6HQ7KZ85 1726 aaKnown RBP20.07■□□□□ 0.8
COL4A1-202ENST00000467182 RIMBP3CA6NJZ7 1639 aa20.07■□□□□ 0.8
COL4A1-202ENST00000467182 RIMBP3BA6NNM3 1639 aa20.07■□□□□ 0.8
COL4A1-202ENST00000467182 RIMBP3Q9UFD9 1639 aa20.07■□□□□ 0.8
COL4A1-202ENST00000467182 KDM5BQ9UGL1 1544 aa20.06■□□□□ 0.8
COL4A1-202ENST00000467182 PHLDB1Q86UU1 1377 aa20.05■□□□□ 0.8
COL4A1-202ENST00000467182 ZCCHC11Q5TAX3 1644 aaKnown RBP20.05■□□□□ 0.8
COL4A1-202ENST00000467182 PCGF6Q9BYE7 350 aa20.04■□□□□ 0.8
COL4A1-202ENST00000467182 NCOA2Q15596 1464 aa20.04■□□□□ 0.8
COL4A1-202ENST00000467182 TROQ12816 1431 aaPredicted RBP20.03■□□□□ 0.8
COL4A1-202ENST00000467182 RRBP1Q9P2E9 1410 aaKnown RBP20.02■□□□□ 0.8
COL4A1-202ENST00000467182 KIF14Q15058 1648 aa19.98■□□□□ 0.79
COL4A1-202ENST00000467182 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.98■□□□□ 0.79
COL4A1-202ENST00000467182 HNRNPUL2Q1KMD3 747 aaKnown RBP19.98■□□□□ 0.79
COL4A1-202ENST00000467182 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
COL4A1-202ENST00000467182 MYOM3Q5VTT5 1437 aa19.93■□□□□ 0.78
COL4A1-202ENST00000467182 PLEKHD1A6NEE1 506 aa19.93■□□□□ 0.78
COL4A1-202ENST00000467182 ABCC10Q5T3U5 1492 aa19.92■□□□□ 0.78
COL4A1-202ENST00000467182 CCNB3Q8WWL7 1395 aa19.92■□□□□ 0.78
COL4A1-202ENST00000467182 FGD6Q6ZV73 1430 aa19.91■□□□□ 0.78
COL4A1-202ENST00000467182 CDC42BPAQ5VT25 1732 aa19.87■□□□□ 0.77
COL4A1-202ENST00000467182 TCOF1Q13428 1488 aaKnown RBP19.86■□□□□ 0.77
COL4A1-202ENST00000467182 ITSN2Q9NZM3 1697 aa19.86■□□□□ 0.77
COL4A1-202ENST00000467182 PTPN23Q9H3S7 1636 aa19.86■□□□□ 0.77
COL4A1-202ENST00000467182 GPATCH8Q9UKJ3 1502 aaKnown RBP19.86■□□□□ 0.77
COL4A1-202ENST00000467182 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.85■□□□□ 0.77
COL4A1-202ENST00000467182 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.85■□□□□ 0.77
COL4A1-202ENST00000467182 MIA2Q96PC5 1412 aa19.85■□□□□ 0.77
COL4A1-202ENST00000467182 TTC37Q6PGP7 1564 aa19.84■□□□□ 0.77
COL4A1-202ENST00000467182 WDR7Q9Y4E6 1490 aa19.84■□□□□ 0.77
COL4A1-202ENST00000467182 CYB5RLQ6IPT4 315 aa19.83■□□□□ 0.77
COL4A1-202ENST00000467182 ASXL2Q76L83 1435 aa19.82■□□□□ 0.76
COL4A1-202ENST00000467182 PREX2Q70Z35 1606 aa19.8■□□□□ 0.76
COL4A1-202ENST00000467182 CDC42BPBQ9Y5S2 1711 aa19.79■□□□□ 0.76
COL4A1-202ENST00000467182 MAPKBP1O60336 1514 aa19.77■□□□□ 0.76
COL4A1-202ENST00000467182 MYO5CQ9NQX4 1742 aa19.76■□□□□ 0.75
COL4A1-202ENST00000467182 ABCA9Q8IUA7 1624 aa19.76■□□□□ 0.75
COL4A1-202ENST00000467182 NPM1P06748 294 aaKnown RBP eCLIP19.75■□□□□ 0.75
COL4A1-202ENST00000467182 FAM50AQ14320 339 aaKnown RBP19.75■□□□□ 0.75
COL4A1-202ENST00000467182 KCNH8Q96L42 1107 aa19.73■□□□□ 0.75
COL4A1-202ENST00000467182 CAMSAP2Q08AD1 1489 aa19.73■□□□□ 0.75
COL4A1-202ENST00000467182 PTPRKQ15262 1439 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms