RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 GOLGA3Q08378 1498 aa25.01■■□□□ 1.59
NPHP4-205ENST00000466897 KIAA0586Q9BVV6 1533 aa24.97■■□□□ 1.59
NPHP4-205ENST00000466897 SHROOM2Q13796 1616 aa24.94■■□□□ 1.58
NPHP4-205ENST00000466897 IQGAP2Q13576 1575 aa24.93■■□□□ 1.58
NPHP4-205ENST00000466897 UGGT2Q9NYU1 1516 aa24.81■■□□□ 1.56
NPHP4-205ENST00000466897 UBTFP17480 764 aaKnown RBP24.75■■□□□ 1.55
NPHP4-205ENST00000466897 JPH4Q96JJ6 628 aa24.75■■□□□ 1.55
NPHP4-205ENST00000466897 TNIKQ9UKE5 1360 aa24.75■■□□□ 1.55
NPHP4-205ENST00000466897 SAMD9Q5K651 1589 aa24.71■■□□□ 1.55
NPHP4-205ENST00000466897 ARHGEF11O15085 1522 aa24.71■■□□□ 1.55
NPHP4-205ENST00000466897 PRG4Q92954 1404 aaPredicted RBP24.69■■□□□ 1.54
NPHP4-205ENST00000466897 RIMBP3CA6NJZ7 1639 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 RIMBP3BA6NNM3 1639 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 KIAA0556O60303 1618 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 RIMBP3Q9UFD9 1639 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 EFCAB5A4FU69 1503 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 DISP1Q96F81 1524 aa24.69■■□□□ 1.54
NPHP4-205ENST00000466897 EHMT2Q96KQ7 1210 aa24.67■■□□□ 1.54
NPHP4-205ENST00000466897 CARMIL2Q6F5E8 1435 aa24.67■■□□□ 1.54
NPHP4-205ENST00000466897 ERCC6L2Q5T890 1561 aa24.67■■□□□ 1.54
NPHP4-205ENST00000466897 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
NPHP4-205ENST00000466897 ARHGAP35Q9NRY4 1499 aa24.55■■□□□ 1.52
NPHP4-205ENST00000466897 CEP162Q5TB80 1403 aa24.53■■□□□ 1.52
NPHP4-205ENST00000466897 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
NPHP4-205ENST00000466897 CLIP1P30622 1438 aa24.52■■□□□ 1.52
NPHP4-205ENST00000466897 PTPRGP23470 1445 aa24.45■■□□□ 1.51
NPHP4-205ENST00000466897 FHOD3Q2V2M9 1422 aa24.44■■□□□ 1.5
NPHP4-205ENST00000466897 RANGAP1P46060 587 aaPredicted RBP24.43■■□□□ 1.5
NPHP4-205ENST00000466897 ABCA8O94911 1581 aa24.39■■□□□ 1.5
NPHP4-205ENST00000466897 FMN1Q68DA7 1419 aa24.39■■□□□ 1.5
NPHP4-205ENST00000466897 P3H3Q8IVL6 736 aa24.37■■□□□ 1.49
NPHP4-205ENST00000466897 UHRF1BP1LA0JNW5 1464 aa24.37■■□□□ 1.49
NPHP4-205ENST00000466897 RAPGEF6Q8TEU7 1601 aa24.35■■□□□ 1.49
NPHP4-205ENST00000466897 CYB5RLQ6IPT4 315 aa24.35■■□□□ 1.49
NPHP4-205ENST00000466897 ADCY10Q96PN6 1610 aa24.35■■□□□ 1.49
NPHP4-205ENST00000466897 ABCC2Q92887 1545 aa24.35■■□□□ 1.49
NPHP4-205ENST00000466897 UACAQ9BZF9 1416 aa24.35■■□□□ 1.49
NPHP4-205ENST00000466897 PLB1Q6P1J6 1458 aa24.32■■□□□ 1.48
NPHP4-205ENST00000466897 PCF11O94913 1555 aaKnown RBP24.27■■□□□ 1.48
NPHP4-205ENST00000466897 HECW1Q76N89 1606 aa24.27■■□□□ 1.48
NPHP4-205ENST00000466897 CASKIN1Q8WXD9 1431 aa24.25■■□□□ 1.47
NPHP4-205ENST00000466897 FYCO1Q9BQS8 1478 aa24.25■■□□□ 1.47
NPHP4-205ENST00000466897 TTBK1Q5TCY1 1321 aaPredicted RBP24.24■■□□□ 1.47
NPHP4-205ENST00000466897 VPS8Q8N3P4 1428 aa24.24■■□□□ 1.47
NPHP4-205ENST00000466897 KDM5BQ9UGL1 1544 aa24.23■■□□□ 1.47
NPHP4-205ENST00000466897 NUP153P49790 1475 aaKnown RBP24.22■■□□□ 1.47
NPHP4-205ENST00000466897 ZCCHC11Q5TAX3 1644 aaKnown RBP24.21■■□□□ 1.47
NPHP4-205ENST00000466897 LRRIQ1Q96JM4 1722 aa24.2■■□□□ 1.46
NPHP4-205ENST00000466897 CCDC18Q5T9S5 1454 aa24.14■■□□□ 1.46
NPHP4-205ENST00000466897 MAPKBP1O60336 1514 aa24.14■■□□□ 1.45
NPHP4-205ENST00000466897 EPRSP07814 1512 aaKnown RBP24.13■■□□□ 1.45
NPHP4-205ENST00000466897 ATP10BO94823 1461 aa24.13■■□□□ 1.45
NPHP4-205ENST00000466897 CFAP43Q8NDM7 1665 aa24.09■■□□□ 1.45
NPHP4-205ENST00000466897 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.45
NPHP4-205ENST00000466897 CDK13Q14004 1512 aaKnown RBP24.06■■□□□ 1.44
NPHP4-205ENST00000466897 MAP3K1Q13233 1512 aa24.05■■□□□ 1.44
NPHP4-205ENST00000466897 TIAM1Q13009 1591 aa24.01■■□□□ 1.43
NPHP4-205ENST00000466897 ASXL2Q76L83 1435 aa24■■□□□ 1.43
NPHP4-205ENST00000466897 WDR7Q9Y4E6 1490 aa24■■□□□ 1.43
NPHP4-205ENST00000466897 ATP1B4Q9UN42 357 aaPredicted RBP23.99■■□□□ 1.43
NPHP4-205ENST00000466897 CDK11AQ9UQ88 783 aaPredicted RBP23.94■■□□□ 1.42
NPHP4-205ENST00000466897 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
NPHP4-205ENST00000466897 DIP2BQ9P265 1576 aa23.93■■□□□ 1.42
NPHP4-205ENST00000466897 KIF13AQ9H1H9 1805 aa23.92■■□□□ 1.42
NPHP4-205ENST00000466897 MAGI3Q5TCQ9 1506 aa23.92■■□□□ 1.42
NPHP4-205ENST00000466897 TROQ12816 1431 aaPredicted RBP23.92■■□□□ 1.42
NPHP4-205ENST00000466897 GLI2P10070 1586 aa23.91■■□□□ 1.42
NPHP4-205ENST00000466897 EHBP1L1Q8N3D4 1523 aa23.91■■□□□ 1.42
NPHP4-205ENST00000466897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.91■■□□□ 1.42
NPHP4-205ENST00000466897 HNRNPUL2Q1KMD3 747 aaKnown RBP23.91■■□□□ 1.42
NPHP4-205ENST00000466897 ABCC10Q5T3U5 1492 aa23.9■■□□□ 1.42
NPHP4-205ENST00000466897 PLEKHD1A6NEE1 506 aa23.9■■□□□ 1.42
NPHP4-205ENST00000466897 KIF14Q15058 1648 aa23.88■■□□□ 1.41
NPHP4-205ENST00000466897 TRHP20396 242 aaPredicted RBP23.88■■□□□ 1.41
NPHP4-205ENST00000466897 LRRC9Q6ZRR7 1453 aa23.87■■□□□ 1.41
NPHP4-205ENST00000466897 ABCA9Q8IUA7 1624 aa23.86■■□□□ 1.41
NPHP4-205ENST00000466897 APLP2Q06481 763 aa23.85■■□□□ 1.41
NPHP4-205ENST00000466897 MTUS2Q5JR59 1369 aa23.83■■□□□ 1.41
NPHP4-205ENST00000466897 SUPT6HQ7KZ85 1726 aaKnown RBP23.83■■□□□ 1.41
NPHP4-205ENST00000466897 MAP3K4Q9Y6R4 1608 aa23.83■■□□□ 1.41
NPHP4-205ENST00000466897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.8■■□□□ 1.4
NPHP4-205ENST00000466897 TTC37Q6PGP7 1564 aa23.78■■□□□ 1.4
NPHP4-205ENST00000466897 MYO5CQ9NQX4 1742 aa23.76■■□□□ 1.39
NPHP4-205ENST00000466897 CDC42BPAQ5VT25 1732 aa23.73■■□□□ 1.39
NPHP4-205ENST00000466897 KANK4Q5T7N3 995 aaPredicted RBP23.73■■□□□ 1.39
NPHP4-205ENST00000466897 KCNH8Q96L42 1107 aa23.73■■□□□ 1.39
NPHP4-205ENST00000466897 ARAP3Q8WWN8 1544 aa23.73■■□□□ 1.39
NPHP4-205ENST00000466897 ITSN2Q9NZM3 1697 aa23.72■■□□□ 1.39
NPHP4-205ENST00000466897 PPRC1Q5VV67 1664 aaKnown RBP23.71■■□□□ 1.39
NPHP4-205ENST00000466897 PREX2Q70Z35 1606 aa23.71■■□□□ 1.39
NPHP4-205ENST00000466897 FAM69CQ0P6D2 419 aa23.71■■□□□ 1.39
NPHP4-205ENST00000466897 NCOA2Q15596 1464 aa23.7■■□□□ 1.38
NPHP4-205ENST00000466897 CDC42BPBQ9Y5S2 1711 aa23.68■■□□□ 1.38
NPHP4-205ENST00000466897 TSPOAP1O95153 1857 aa23.68■■□□□ 1.38
NPHP4-205ENST00000466897 CD109Q6YHK3 1445 aa23.67■■□□□ 1.38
NPHP4-205ENST00000466897 CFAP74Q9C0B2 1584 aa23.66■■□□□ 1.38
NPHP4-205ENST00000466897 PLCH2O75038 1416 aa23.64■■□□□ 1.37
NPHP4-205ENST00000466897 TEX14Q8IWB6 1497 aa23.63■■□□□ 1.37
NPHP4-205ENST00000466897 GPATCH8Q9UKJ3 1502 aaKnown RBP23.63■■□□□ 1.37
NPHP4-205ENST00000466897 CCNB3Q8WWL7 1395 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms