RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-223ENST00000463004 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
RBM39-223ENST00000463004 CCNB3Q8WWL7 1395 aa16.51■□□□□ 0.23
RBM39-223ENST00000463004 CFDP1Q9UEE9 299 aaPredicted RBP16.5■□□□□ 0.23
RBM39-223ENST00000463004 LAMC3Q9Y6N6 1575 aa16.5■□□□□ 0.23
RBM39-223ENST00000463004 IGF1RP08069 1367 aa16.5■□□□□ 0.23
RBM39-223ENST00000463004 ERICH3Q5RHP9 1530 aa16.5■□□□□ 0.23
RBM39-223ENST00000463004 KIF21BO75037 1637 aa16.48■□□□□ 0.23
RBM39-223ENST00000463004 MRC2Q9UBG0 1479 aa16.47■□□□□ 0.23
RBM39-223ENST00000463004 YTHDC1Q96MU7 727 aaKnown RBP16.47■□□□□ 0.23
RBM39-223ENST00000463004 ARHGAP35Q9NRY4 1499 aa16.45■□□□□ 0.22
RBM39-223ENST00000463004 ANP32CO43423 234 aa16.45■□□□□ 0.22
RBM39-223ENST00000463004 ESF1Q9H501 851 aaKnown RBP16.43■□□□□ 0.22
RBM39-223ENST00000463004 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
RBM39-223ENST00000463004 RUSC2Q8N2Y8 1516 aa16.42■□□□□ 0.22
RBM39-223ENST00000463004 CHIC2Q9UKJ5 165 aa16.42■□□□□ 0.22
RBM39-223ENST00000463004 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
RBM39-223ENST00000463004 IFT140Q96RY7 1462 aa16.41■□□□□ 0.22
RBM39-223ENST00000463004 TOPBP1Q92547 1522 aa16.4■□□□□ 0.22
RBM39-223ENST00000463004 GRIN2BQ13224 1484 aa16.4■□□□□ 0.22
RBM39-223ENST00000463004 ZNF326Q5BKZ1 582 aaKnown RBP16.39■□□□□ 0.21
RBM39-223ENST00000463004 TIMELESSQ9UNS1 1208 aa16.39■□□□□ 0.21
RBM39-223ENST00000463004 CUX1P39880 1505 aa16.36■□□□□ 0.21
RBM39-223ENST00000463004 RAD54L2Q9Y4B4 1467 aa16.36■□□□□ 0.21
RBM39-223ENST00000463004 JPH4Q96JJ6 628 aa16.35■□□□□ 0.21
RBM39-223ENST00000463004 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
RBM39-223ENST00000463004 CCDC18Q5T9S5 1454 aa16.35■□□□□ 0.21
RBM39-223ENST00000463004 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.21
RBM39-223ENST00000463004 PRXQ9BXM0 1461 aa16.33■□□□□ 0.2
RBM39-223ENST00000463004 FHOD3Q2V2M9 1422 aa16.32■□□□□ 0.2
RBM39-223ENST00000463004 RSPH4AQ5TD94 716 aa16.32■□□□□ 0.2
RBM39-223ENST00000463004 RRP7BPQ9NSQ0 103 aa16.32■□□□□ 0.2
RBM39-223ENST00000463004 POLA1P09884 1462 aaPredicted RBP16.31■□□□□ 0.2
RBM39-223ENST00000463004 NESP48681 1621 aa16.3■□□□□ 0.2
RBM39-223ENST00000463004 ABCA10Q8WWZ4 1543 aa16.29■□□□□ 0.2
RBM39-223ENST00000463004 SETD5Q9C0A6 1442 aa16.29■□□□□ 0.2
RBM39-223ENST00000463004 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
RBM39-223ENST00000463004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.25■□□□□ 0.194e-13■■□□□ 11.5
RBM39-223ENST00000463004 KANK4Q5T7N3 995 aaPredicted RBP16.25■□□□□ 0.19
RBM39-223ENST00000463004 EFCAB2Q5VUJ9 269 aa16.23■□□□□ 0.19
RBM39-223ENST00000463004 STAG3Q9UJ98 1225 aa16.23■□□□□ 0.19
RBM39-223ENST00000463004 PTPRGP23470 1445 aa16.22■□□□□ 0.19
RBM39-223ENST00000463004 BIVM-ERCC5R4GMW8 1640 aa16.22■□□□□ 0.19
RBM39-223ENST00000463004 AQRO60306 1485 aaKnown RBP eCLIP16.21■□□□□ 0.182e-10■■■■□ 23
RBM39-223ENST00000463004 CASKIN1Q8WXD9 1431 aa16.19■□□□□ 0.18
RBM39-223ENST00000463004 EIF4G2P78344 907 aaKnown RBP eCLIP16.19■□□□□ 0.18
RBM39-223ENST00000463004 ANKRD30AQ9BXX3 1397 aa16.19■□□□□ 0.18
RBM39-223ENST00000463004 KANK1Q14678 1352 aa16.18■□□□□ 0.18
RBM39-223ENST00000463004 CUL7Q14999 1698 aa16.18■□□□□ 0.18
RBM39-223ENST00000463004 SLC24A1O60721 1099 aa16.16■□□□□ 0.18
RBM39-223ENST00000463004 CHGAP10645 457 aaKnown RBP16.16■□□□□ 0.18
RBM39-223ENST00000463004 FYCO1Q9BQS8 1478 aa16.16■□□□□ 0.18
RBM39-223ENST00000463004 BCANQ96GW7 911 aa16.14■□□□□ 0.17
RBM39-223ENST00000463004 OSCARQ8IYS5 282 aa16.14■□□□□ 0.17
RBM39-223ENST00000463004 CDCA8Q53HL2 280 aa16.11■□□□□ 0.17
RBM39-223ENST00000463004 ERICH6Q7L0X2 663 aa16.1■□□□□ 0.17
RBM39-223ENST00000463004 NEFMP07197 916 aa16.09■□□□□ 0.17
RBM39-223ENST00000463004 CNGB1Q14028 1251 aaPredicted RBP16.09■□□□□ 0.17
RBM39-223ENST00000463004 KIAA0586Q9BVV6 1533 aa16.08■□□□□ 0.16
RBM39-223ENST00000463004 MAGI1Q96QZ7 1491 aaPredicted RBP16.08■□□□□ 0.16
RBM39-223ENST00000463004 RAB3GAP2Q9H2M9 1393 aa16.07■□□□□ 0.16
RBM39-223ENST00000463004 LRRC9Q6ZRR7 1453 aa16.06■□□□□ 0.16
RBM39-223ENST00000463004 SNAPC4Q5SXM2 1469 aa16.05■□□□□ 0.16
RBM39-223ENST00000463004 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
RBM39-223ENST00000463004 MYOM3Q5VTT5 1437 aa16.04■□□□□ 0.16
RBM39-223ENST00000463004 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
RBM39-223ENST00000463004 KDM2AQ9Y2K7 1162 aa16.03■□□□□ 0.16
RBM39-223ENST00000463004 DDX10Q13206 875 aaKnown RBP16.03■□□□□ 0.16
RBM39-223ENST00000463004 SYNJ2O15056 1496 aa16.01■□□□□ 0.15
RBM39-223ENST00000463004 FGD6Q6ZV73 1430 aa16■□□□□ 0.15
RBM39-223ENST00000463004 MAP3K1Q13233 1512 aa16■□□□□ 0.15
RBM39-223ENST00000463004 EHBP1L1Q8N3D4 1523 aa15.98■□□□□ 0.15
RBM39-223ENST00000463004 HECW1Q76N89 1606 aa15.98■□□□□ 0.15
RBM39-223ENST00000463004 SPAG9O60271 1321 aaKnown RBP15.97■□□□□ 0.15
RBM39-223ENST00000463004 MPHOSPH9Q99550 1183 aa15.97■□□□□ 0.15
RBM39-223ENST00000463004 IQGAP2Q13576 1575 aa15.97■□□□□ 0.15
RBM39-223ENST00000463004 HDGFP51858 240 aaKnown RBP15.97■□□□□ 0.15
RBM39-223ENST00000463004 DNAJC5BQ9UF47 199 aa15.96■□□□□ 0.15
RBM39-223ENST00000463004 NUP155O75694 1391 aa15.95■□□□□ 0.14
RBM39-223ENST00000463004 PRG4Q92954 1404 aaPredicted RBP15.95■□□□□ 0.14
RBM39-223ENST00000463004 MIA2Q96PC5 1412 aa15.95■□□□□ 0.14
RBM39-223ENST00000463004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.95■□□□□ 0.14
RBM39-223ENST00000463004 RRBP1Q9P2E9 1410 aaKnown RBP15.95■□□□□ 0.14
RBM39-223ENST00000463004 CARD11Q9BXL7 1154 aa15.94■□□□□ 0.14
RBM39-223ENST00000463004 PPP1R15AO75807 674 aaPredicted RBP15.94■□□□□ 0.14
RBM39-223ENST00000463004 PKD2Q13563 968 aa15.94■□□□□ 0.14
RBM39-223ENST00000463004 SIN3AQ96ST3 1273 aa15.93■□□□□ 0.14
RBM39-223ENST00000463004 NCOA2Q15596 1464 aa15.93■□□□□ 0.14
RBM39-223ENST00000463004 GRIN2AQ12879 1464 aa15.92■□□□□ 0.14
RBM39-223ENST00000463004 RGL3Q3MIN7 710 aa15.92■□□□□ 0.14
RBM39-223ENST00000463004 PRDM2Q13029 1718 aa15.91■□□□□ 0.14
RBM39-223ENST00000463004 TIAM1Q13009 1591 aa15.91■□□□□ 0.14
RBM39-223ENST00000463004 TMC1Q8TDI8 760 aa15.91■□□□□ 0.14
RBM39-223ENST00000463004 ARID4BQ4LE39 1312 aaPredicted RBP15.91■□□□□ 0.14
RBM39-223ENST00000463004 PLEKHH2Q8IVE3 1493 aa15.9■□□□□ 0.14
RBM39-223ENST00000463004 TROQ12816 1431 aaPredicted RBP15.89■□□□□ 0.13
RBM39-223ENST00000463004 HNRNPMP52272 730 aaKnown RBP eCLIP15.89■□□□□ 0.13
RBM39-223ENST00000463004 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
RBM39-223ENST00000463004 PHLDB1Q86UU1 1377 aa15.87■□□□□ 0.13
RBM39-223ENST00000463004 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
RBM39-223ENST00000463004 STAC3Q96MF2 364 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms