RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 CLASP1Q7Z460 1538 aa12.57□□□□□ -0.4
USP4-207ENST00000462673 CEP170Q5SW79 1584 aa12.56□□□□□ -0.4
USP4-207ENST00000462673 CARMIL2Q6F5E8 1435 aa12.55□□□□□ -0.4
USP4-207ENST00000462673 CYB5RLQ6IPT4 315 aa12.54□□□□□ -0.4
USP4-207ENST00000462673 PRG4Q92954 1404 aaPredicted RBP12.53□□□□□ -0.4
USP4-207ENST00000462673 ARHGEF11O15085 1522 aa12.52□□□□□ -0.4
USP4-207ENST00000462673 IQGAP2Q13576 1575 aa12.5□□□□□ -0.41
USP4-207ENST00000462673 KIF21BO75037 1637 aa12.49□□□□□ -0.41
USP4-207ENST00000462673 GOLGA3Q08378 1498 aa12.49□□□□□ -0.41
USP4-207ENST00000462673 NPM1P06748 294 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP4-207ENST00000462673 RIMBP3CA6NJZ7 1639 aa12.48□□□□□ -0.41
USP4-207ENST00000462673 RIMBP3BA6NNM3 1639 aa12.48□□□□□ -0.41
USP4-207ENST00000462673 RIMBP3Q9UFD9 1639 aa12.48□□□□□ -0.41
USP4-207ENST00000462673 SHROOM2Q13796 1616 aa12.47□□□□□ -0.41
USP4-207ENST00000462673 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
USP4-207ENST00000462673 TNIKQ9UKE5 1360 aa12.45□□□□□ -0.42
USP4-207ENST00000462673 PTPRGP23470 1445 aa12.45□□□□□ -0.42
USP4-207ENST00000462673 CTTNBP2Q8WZ74 1663 aa12.44□□□□□ -0.42
USP4-207ENST00000462673 UGGT2Q9NYU1 1516 aa12.43□□□□□ -0.42
USP4-207ENST00000462673 RANGAP1P46060 587 aaPredicted RBP12.43□□□□□ -0.42
USP4-207ENST00000462673 TTBK1Q5TCY1 1321 aaPredicted RBP12.4□□□□□ -0.42
USP4-207ENST00000462673 ARAP1Q96P48 1450 aa12.4□□□□□ -0.43
USP4-207ENST00000462673 P3H3Q8IVL6 736 aa12.38□□□□□ -0.43
USP4-207ENST00000462673 DISP1Q96F81 1524 aa12.37□□□□□ -0.43
USP4-207ENST00000462673 SENP3Q9H4L4 574 aaPredicted RBP12.35□□□□□ -0.43
USP4-207ENST00000462673 ERCC6L2Q5T890 1561 aa12.35□□□□□ -0.43
USP4-207ENST00000462673 EFCAB5A4FU69 1503 aa12.34□□□□□ -0.43
USP4-207ENST00000462673 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
USP4-207ENST00000462673 KIAA0556O60303 1618 aa12.33□□□□□ -0.43
USP4-207ENST00000462673 LOC105371045A0A1W2PR82 267 aa12.32□□□□□ -0.44
USP4-207ENST00000462673 FMN1Q68DA7 1419 aa12.3□□□□□ -0.44
USP4-207ENST00000462673 TRHP20396 242 aaPredicted RBP12.3□□□□□ -0.44
USP4-207ENST00000462673 UHRF1BP1LA0JNW5 1464 aa12.29□□□□□ -0.44
USP4-207ENST00000462673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.29□□□□□ -0.44
USP4-207ENST00000462673 HNRNPUL2Q1KMD3 747 aaKnown RBP12.29□□□□□ -0.44
USP4-207ENST00000462673 SAMD9Q5K651 1589 aa12.28□□□□□ -0.44
USP4-207ENST00000462673 ATP1B4Q9UN42 357 aaPredicted RBP12.28□□□□□ -0.44
USP4-207ENST00000462673 CDK11AQ9UQ88 783 aaPredicted RBP12.28□□□□□ -0.44
USP4-207ENST00000462673 CLIP1P30622 1438 aa12.28□□□□□ -0.44
USP4-207ENST00000462673 FHOD3Q2V2M9 1422 aa12.25□□□□□ -0.45
USP4-207ENST00000462673 ABCC2Q92887 1545 aa12.25□□□□□ -0.45
USP4-207ENST00000462673 PLEKHD1A6NEE1 506 aa12.24□□□□□ -0.45
USP4-207ENST00000462673 PHF23Q9BUL5 403 aaPredicted RBP12.24□□□□□ -0.45
USP4-207ENST00000462673 ARHGAP35Q9NRY4 1499 aa12.23□□□□□ -0.45
USP4-207ENST00000462673 PLB1Q6P1J6 1458 aa12.22□□□□□ -0.45
USP4-207ENST00000462673 CEP162Q5TB80 1403 aa12.21□□□□□ -0.45
USP4-207ENST00000462673 HRCP23327 699 aa12.21□□□□□ -0.45
USP4-207ENST00000462673 KDM5BQ9UGL1 1544 aa12.21□□□□□ -0.46
USP4-207ENST00000462673 ADCY10Q96PN6 1610 aa12.2□□□□□ -0.46
USP4-207ENST00000462673 ABCA8O94911 1581 aa12.2□□□□□ -0.46
USP4-207ENST00000462673 APLP2Q06481 763 aa12.19□□□□□ -0.46
USP4-207ENST00000462673 FAM69CQ0P6D2 419 aa12.19□□□□□ -0.46
USP4-207ENST00000462673 MAPKBP1O60336 1514 aa12.18□□□□□ -0.46
USP4-207ENST00000462673 RAPGEF6Q8TEU7 1601 aa12.18□□□□□ -0.46
USP4-207ENST00000462673 KCNH8Q96L42 1107 aa12.17□□□□□ -0.46
USP4-207ENST00000462673 ARID3CA6NKF2 412 aa12.16□□□□□ -0.46
USP4-207ENST00000462673 ASXL2Q76L83 1435 aa12.16□□□□□ -0.46
USP4-207ENST00000462673 ATP10BO94823 1461 aa12.15□□□□□ -0.46
USP4-207ENST00000462673 CASKIN1Q8WXD9 1431 aa12.15□□□□□ -0.46
USP4-207ENST00000462673 ABCC10Q5T3U5 1492 aa12.14□□□□□ -0.47
USP4-207ENST00000462673 CCDC18Q5T9S5 1454 aa12.13□□□□□ -0.47
USP4-207ENST00000462673 ZCCHC11Q5TAX3 1644 aaKnown RBP12.12□□□□□ -0.47
USP4-207ENST00000462673 HECW1Q76N89 1606 aa12.12□□□□□ -0.47
USP4-207ENST00000462673 NUP153P49790 1475 aaKnown RBP12.12□□□□□ -0.47
USP4-207ENST00000462673 WDR7Q9Y4E6 1490 aa12.12□□□□□ -0.47
USP4-207ENST00000462673 FYCO1Q9BQS8 1478 aa12.11□□□□□ -0.47
USP4-207ENST00000462673 EPRSP07814 1512 aaKnown RBP12.1□□□□□ -0.47
USP4-207ENST00000462673 VPS8Q8N3P4 1428 aa12.09□□□□□ -0.47
USP4-207ENST00000462673 GLI2P10070 1586 aa12.06□□□□□ -0.48
USP4-207ENST00000462673 CD109Q6YHK3 1445 aa12.05□□□□□ -0.48
USP4-207ENST00000462673 MTUS2Q5JR59 1369 aa12.05□□□□□ -0.48
USP4-207ENST00000462673 PHLDB1Q86UU1 1377 aa12.05□□□□□ -0.48
USP4-207ENST00000462673 TEX14Q8IWB6 1497 aa12.03□□□□□ -0.48
USP4-207ENST00000462673 DIP2BQ9P265 1576 aa12.03□□□□□ -0.48
USP4-207ENST00000462673 TROQ12816 1431 aaPredicted RBP12.03□□□□□ -0.48
USP4-207ENST00000462673 CDK13Q14004 1512 aaKnown RBP12.01□□□□□ -0.49
USP4-207ENST00000462673 PCF11O94913 1555 aaKnown RBP12.01□□□□□ -0.49
USP4-207ENST00000462673 EFCAB2Q5VUJ9 269 aa12.01□□□□□ -0.49
USP4-207ENST00000462673 MAP3K1Q13233 1512 aa12□□□□□ -0.49
USP4-207ENST00000462673 KIF13AQ9H1H9 1805 aa11.98□□□□□ -0.49
USP4-207ENST00000462673 CFAP43Q8NDM7 1665 aa11.98□□□□□ -0.49
USP4-207ENST00000462673 MAGI3Q5TCQ9 1506 aa11.98□□□□□ -0.49
USP4-207ENST00000462673 KIF14Q15058 1648 aa11.97□□□□□ -0.49
USP4-207ENST00000462673 ABCA9Q8IUA7 1624 aa11.96□□□□□ -0.5
USP4-207ENST00000462673 MAP3K4Q9Y6R4 1608 aa11.96□□□□□ -0.5
USP4-207ENST00000462673 PLCH2O75038 1416 aa11.95□□□□□ -0.5
USP4-207ENST00000462673 CCNB3Q8WWL7 1395 aa11.95□□□□□ -0.5
USP4-207ENST00000462673 CFDP1Q9UEE9 299 aaPredicted RBP11.95□□□□□ -0.5
USP4-207ENST00000462673 NEO1Q92859 1461 aa11.94□□□□□ -0.5
USP4-207ENST00000462673 TSPOAP1O95153 1857 aa11.93□□□□□ -0.5
USP4-207ENST00000462673 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP4-207ENST00000462673 RSPH4AQ5TD94 716 aa11.93□□□□□ -0.5
USP4-207ENST00000462673 TIAM1Q13009 1591 aa11.92□□□□□ -0.5
USP4-207ENST00000462673 EHBP1L1Q8N3D4 1523 aa11.92□□□□□ -0.5
USP4-207ENST00000462673 LRRC9Q6ZRR7 1453 aa11.92□□□□□ -0.5
USP4-207ENST00000462673 ZNF777Q9ULD5 760 aaPredicted RBP11.91□□□□□ -0.5
USP4-207ENST00000462673 ARAP3Q8WWN8 1544 aa11.91□□□□□ -0.5
USP4-207ENST00000462673 FANCAO15360 1455 aa11.9□□□□□ -0.5
USP4-207ENST00000462673 KANK4Q5T7N3 995 aaPredicted RBP11.9□□□□□ -0.5
USP4-207ENST00000462673 AKNAQ7Z591 1439 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms