RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 PRG4Q92954 1404 aaPredicted RBP24.1■■□□□ 1.45
USP4-206ENST00000461553 KIAA0586Q9BVV6 1533 aa24.05■■□□□ 1.44
USP4-206ENST00000461553 JPH4Q96JJ6 628 aa24.03■■□□□ 1.44
USP4-206ENST00000461553 CARMIL1Q5VZK9 1371 aa24.01■■□□□ 1.43
USP4-206ENST00000461553 IQGAP2Q13576 1575 aa23.95■■□□□ 1.42
USP4-206ENST00000461553 ADCY10Q96PN6 1610 aa23.89■■□□□ 1.42
USP4-206ENST00000461553 KIF13AQ9H1H9 1805 aa23.89■■□□□ 1.41
USP4-206ENST00000461553 RAPGEF2Q9Y4G8 1499 aa23.87■■□□□ 1.41
USP4-206ENST00000461553 CTTNBP2Q8WZ74 1663 aa23.86■■□□□ 1.41
USP4-206ENST00000461553 CARMIL2Q6F5E8 1435 aa23.82■■□□□ 1.4
USP4-206ENST00000461553 MAPKBP1O60336 1514 aa23.81■■□□□ 1.4
USP4-206ENST00000461553 UGGT2Q9NYU1 1516 aa23.75■■□□□ 1.39
USP4-206ENST00000461553 TNIKQ9UKE5 1360 aa23.75■■□□□ 1.39
USP4-206ENST00000461553 NPM1P06748 294 aaKnown RBP eCLIP23.74■■□□□ 1.39
USP4-206ENST00000461553 PTPRGP23470 1445 aa23.74■■□□□ 1.39
USP4-206ENST00000461553 KIAA0556O60303 1618 aa23.73■■□□□ 1.39
USP4-206ENST00000461553 DIP2BQ9P265 1576 aa23.73■■□□□ 1.39
USP4-206ENST00000461553 DISP1Q96F81 1524 aa23.72■■□□□ 1.39
USP4-206ENST00000461553 ABCC10Q5T3U5 1492 aa23.69■■□□□ 1.38
USP4-206ENST00000461553 PRXQ9BXM0 1461 aa23.67■■□□□ 1.38
USP4-206ENST00000461553 TTBK1Q5TCY1 1321 aaPredicted RBP23.66■■□□□ 1.38
USP4-206ENST00000461553 ABCC2Q92887 1545 aa23.65■■□□□ 1.38
USP4-206ENST00000461553 UHRF1BP1LA0JNW5 1464 aa23.62■■□□□ 1.37
USP4-206ENST00000461553 TSPOAP1O95153 1857 aa23.6■■□□□ 1.37
USP4-206ENST00000461553 UACAQ9BZF9 1416 aa23.59■■□□□ 1.37
USP4-206ENST00000461553 GOLGA3Q08378 1498 aa23.59■■□□□ 1.37
USP4-206ENST00000461553 FAM69CQ0P6D2 419 aa23.58■■□□□ 1.37
USP4-206ENST00000461553 ZCCHC11Q5TAX3 1644 aaKnown RBP23.55■■□□□ 1.36
USP4-206ENST00000461553 EEA1Q15075 1411 aa23.54■■□□□ 1.36
USP4-206ENST00000461553 PLB1Q6P1J6 1458 aa23.52■■□□□ 1.36
USP4-206ENST00000461553 ASXL2Q76L83 1435 aa23.51■■□□□ 1.35
USP4-206ENST00000461553 KDM5BQ9UGL1 1544 aa23.51■■□□□ 1.35
USP4-206ENST00000461553 GLI2P10070 1586 aa23.48■■□□□ 1.35
USP4-206ENST00000461553 KDM6BO15054 1643 aa23.48■■□□□ 1.35
USP4-206ENST00000461553 CSRNP3Q8WYN3 585 aa23.46■■□□□ 1.35
USP4-206ENST00000461553 ABCA8O94911 1581 aa23.45■■□□□ 1.34
USP4-206ENST00000461553 PPRC1Q5VV67 1664 aaKnown RBP23.43■■□□□ 1.34
USP4-206ENST00000461553 SAMD9Q5K651 1589 aa23.43■■□□□ 1.34
USP4-206ENST00000461553 KIF21BO75037 1637 aa23.41■■□□□ 1.34
USP4-206ENST00000461553 MAP3K4Q9Y6R4 1608 aa23.41■■□□□ 1.34
USP4-206ENST00000461553 EPRSP07814 1512 aaKnown RBP23.39■■□□□ 1.34
USP4-206ENST00000461553 WDR7Q9Y4E6 1490 aa23.36■■□□□ 1.33
USP4-206ENST00000461553 RAPGEF6Q8TEU7 1601 aa23.3■■□□□ 1.32
USP4-206ENST00000461553 CFAP43Q8NDM7 1665 aa23.3■■□□□ 1.32
USP4-206ENST00000461553 FAM9AQ8IZU1 332 aaPredicted RBP23.3■■□□□ 1.32
USP4-206ENST00000461553 TEX14Q8IWB6 1497 aa23.3■■□□□ 1.32
USP4-206ENST00000461553 AEBP2Q6ZN18 517 aaPredicted RBP23.26■■□□□ 1.31
USP4-206ENST00000461553 EFCAB5A4FU69 1503 aa23.25■■□□□ 1.31
USP4-206ENST00000461553 P3H3Q8IVL6 736 aa23.25■■□□□ 1.31
USP4-206ENST00000461553 CHIC1Q5VXU3 224 aa23.21■■□□□ 1.31
USP4-206ENST00000461553 FHOD3Q2V2M9 1422 aa23.2■■□□□ 1.3
USP4-206ENST00000461553 ATP10BO94823 1461 aa23.17■■□□□ 1.3
USP4-206ENST00000461553 RANGAP1P46060 587 aaPredicted RBP23.17■■□□□ 1.3
USP4-206ENST00000461553 MAGI3Q5TCQ9 1506 aa23.15■■□□□ 1.3
USP4-206ENST00000461553 ARID3CA6NKF2 412 aa23.15■■□□□ 1.3
USP4-206ENST00000461553 CD109Q6YHK3 1445 aa23.14■■□□□ 1.29
USP4-206ENST00000461553 NUP153P49790 1475 aaKnown RBP23.13■■□□□ 1.29
USP4-206ENST00000461553 ABCA9Q8IUA7 1624 aa23.13■■□□□ 1.29
USP4-206ENST00000461553 KCNH8Q96L42 1107 aa23.12■■□□□ 1.29
USP4-206ENST00000461553 COL17A1Q9UMD9 1497 aaPredicted RBP23.09■■□□□ 1.29
USP4-206ENST00000461553 UBTFP17480 764 aaKnown RBP23.05■■□□□ 1.28
USP4-206ENST00000461553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.04■■□□□ 1.28
USP4-206ENST00000461553 HNRNPUL2Q1KMD3 747 aaKnown RBP23.04■■□□□ 1.28
USP4-206ENST00000461553 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
USP4-206ENST00000461553 HECW1Q76N89 1606 aa23.01■■□□□ 1.27
USP4-206ENST00000461553 ARHGAP35Q9NRY4 1499 aa22.98■■□□□ 1.27
USP4-206ENST00000461553 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
USP4-206ENST00000461553 ARAP3Q8WWN8 1544 aa22.96■■□□□ 1.27
USP4-206ENST00000461553 ADGRL1O94910 1474 aa22.95■■□□□ 1.26
USP4-206ENST00000461553 CDK13Q14004 1512 aaKnown RBP22.95■■□□□ 1.26
USP4-206ENST00000461553 CFAP74Q9C0B2 1584 aa22.94■■□□□ 1.26
USP4-206ENST00000461553 NEO1Q92859 1461 aa22.92■■□□□ 1.26
USP4-206ENST00000461553 KDM4FA0A1W2PPD8 638 aa22.92■■□□□ 1.26
USP4-206ENST00000461553 TTC37Q6PGP7 1564 aa22.92■■□□□ 1.26
USP4-206ENST00000461553 PHLDB1Q86UU1 1377 aa22.91■■□□□ 1.26
USP4-206ENST00000461553 PLEKHD1A6NEE1 506 aa22.9■■□□□ 1.26
USP4-206ENST00000461553 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.89■■□□□ 1.26
USP4-206ENST00000461553 LRRIQ1Q96JM4 1722 aa22.88■■□□□ 1.25
USP4-206ENST00000461553 FRMPD1Q5SYB0 1578 aa22.85■■□□□ 1.25
USP4-206ENST00000461553 MYO5CQ9NQX4 1742 aa22.84■■□□□ 1.25
USP4-206ENST00000461553 PCF11O94913 1555 aaKnown RBP22.84■■□□□ 1.25
USP4-206ENST00000461553 KIF14Q15058 1648 aa22.82■■□□□ 1.24
USP4-206ENST00000461553 RICTORQ6R327 1708 aa22.82■■□□□ 1.24
USP4-206ENST00000461553 FANCAO15360 1455 aa22.81■■□□□ 1.24
USP4-206ENST00000461553 ATP1B4Q9UN42 357 aaPredicted RBP22.81■■□□□ 1.24
USP4-206ENST00000461553 ARHGEF40Q8TER5 1519 aa22.77■■□□□ 1.24
USP4-206ENST00000461553 AKNAQ7Z591 1439 aa22.75■■□□□ 1.23
USP4-206ENST00000461553 DENND4BO75064 1496 aaPredicted RBP22.75■■□□□ 1.23
USP4-206ENST00000461553 CCDC18Q5T9S5 1454 aa22.75■■□□□ 1.23
USP4-206ENST00000461553 CDK11AQ9UQ88 783 aaPredicted RBP22.74■■□□□ 1.23
USP4-206ENST00000461553 CLIP1P30622 1438 aa22.74■■□□□ 1.23
USP4-206ENST00000461553 TROQ12816 1431 aaPredicted RBP22.73■■□□□ 1.23
USP4-206ENST00000461553 CASKIN1Q8WXD9 1431 aa22.73■■□□□ 1.23
USP4-206ENST00000461553 RAPGEF3O95398 923 aa22.72■■□□□ 1.23
USP4-206ENST00000461553 FYCO1Q9BQS8 1478 aa22.72■■□□□ 1.23
USP4-206ENST00000461553 ZMYM4Q5VZL5 1548 aa22.72■■□□□ 1.23
USP4-206ENST00000461553 PLCH2O75038 1416 aa22.7■■□□□ 1.22
USP4-206ENST00000461553 BCORL1Q5H9F3 1711 aa22.67■■□□□ 1.22
USP4-206ENST00000461553 ADAMTSL3P82987 1691 aa22.65■■□□□ 1.22
USP4-206ENST00000461553 PREX2Q70Z35 1606 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms