RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CARMIL1Q5VZK9 1371 aa16.41■□□□□ 0.22
NPHP4-204ENST00000460696 MTUS2Q5JR59 1369 aa16.4■□□□□ 0.22
NPHP4-204ENST00000460696 FANCD2Q9BXW9 1451 aa16.4■□□□□ 0.22
NPHP4-204ENST00000460696 ZNF326Q5BKZ1 582 aaKnown RBP16.4■□□□□ 0.22
NPHP4-204ENST00000460696 TONSLQ96HA7 1378 aa16.36■□□□□ 0.21
NPHP4-204ENST00000460696 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
NPHP4-204ENST00000460696 CCNB3Q8WWL7 1395 aa16.36■□□□□ 0.21
NPHP4-204ENST00000460696 SIN3AQ96ST3 1273 aa16.35■□□□□ 0.21
NPHP4-204ENST00000460696 ERICH6Q7L0X2 663 aa16.31■□□□□ 0.2
NPHP4-204ENST00000460696 RRP7BPQ9NSQ0 103 aa16.3■□□□□ 0.2
NPHP4-204ENST00000460696 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
NPHP4-204ENST00000460696 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
NPHP4-204ENST00000460696 CDK11AQ9UQ88 783 aaPredicted RBP16.26■□□□□ 0.19
NPHP4-204ENST00000460696 UNC13AQ9UPW8 1703 aa16.25■□□□□ 0.19
NPHP4-204ENST00000460696 AQRO60306 1485 aaKnown RBP eCLIP16.23■□□□□ 0.194e-7■■■■■ 68.3
NPHP4-204ENST00000460696 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
NPHP4-204ENST00000460696 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
NPHP4-204ENST00000460696 FHAD1B1AJZ9 1412 aa16.21■□□□□ 0.18
NPHP4-204ENST00000460696 FKBP8Q14318 412 aa16.19■□□□□ 0.18
NPHP4-204ENST00000460696 RAB3GAP2Q9H2M9 1393 aa16.17■□□□□ 0.18
NPHP4-204ENST00000460696 ESF1Q9H501 851 aaKnown RBP16.15■□□□□ 0.18
NPHP4-204ENST00000460696 KIF21BO75037 1637 aa16.15■□□□□ 0.18
NPHP4-204ENST00000460696 JPH4Q96JJ6 628 aa16.15■□□□□ 0.18
NPHP4-204ENST00000460696 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
NPHP4-204ENST00000460696 HNRNPUQ00839 825 aaKnown RBP eCLIP16.14■□□□□ 0.17
NPHP4-204ENST00000460696 IGF1RP08069 1367 aa16.14■□□□□ 0.17
NPHP4-204ENST00000460696 DHX57Q6P158 1386 aaKnown RBP16.14■□□□□ 0.17
NPHP4-204ENST00000460696 FHOD3Q2V2M9 1422 aa16.13■□□□□ 0.17
NPHP4-204ENST00000460696 SETD5Q9C0A6 1442 aa16.13■□□□□ 0.17
NPHP4-204ENST00000460696 PLEKHD1A6NEE1 506 aa16.11■□□□□ 0.17
NPHP4-204ENST00000460696 MYT1Q01538 1121 aa16.1■□□□□ 0.17
NPHP4-204ENST00000460696 FAM9BQ8IZU0 186 aa16.09■□□□□ 0.17
NPHP4-204ENST00000460696 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.17
NPHP4-204ENST00000460696 MLECQ14165 292 aa16.08■□□□□ 0.16
NPHP4-204ENST00000460696 FGD5Q6ZNL6 1462 aa16.06■□□□□ 0.16
NPHP4-204ENST00000460696 ARAP1Q96P48 1450 aa16.06■□□□□ 0.16
NPHP4-204ENST00000460696 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.16
NPHP4-204ENST00000460696 ARHGAP35Q9NRY4 1499 aa16.05■□□□□ 0.16
NPHP4-204ENST00000460696 EIF4G2P78344 907 aaKnown RBP eCLIP16.04■□□□□ 0.16
NPHP4-204ENST00000460696 CFTRP13569 1480 aa16.03■□□□□ 0.16
NPHP4-204ENST00000460696 PRXQ9BXM0 1461 aa16.02■□□□□ 0.16
NPHP4-204ENST00000460696 TOP2BQ02880 1626 aa16.02■□□□□ 0.15
NPHP4-204ENST00000460696 KDM2AQ9Y2K7 1162 aa16.02■□□□□ 0.15
NPHP4-204ENST00000460696 CUX1P39880 1505 aa16.01■□□□□ 0.15
NPHP4-204ENST00000460696 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
NPHP4-204ENST00000460696 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
NPHP4-204ENST00000460696 TSPY4P0CV99 314 aa16■□□□□ 0.15
NPHP4-204ENST00000460696 TSPY10P0CW01 314 aa16■□□□□ 0.15
NPHP4-204ENST00000460696 CFDP1Q9UEE9 299 aaPredicted RBP16■□□□□ 0.15
NPHP4-204ENST00000460696 IRX6P78412 446 aaPredicted RBP15.99■□□□□ 0.15
NPHP4-204ENST00000460696 FMN1Q68DA7 1419 aa15.99■□□□□ 0.15
NPHP4-204ENST00000460696 HMGXB3Q12766 1538 aa15.98■□□□□ 0.15
NPHP4-204ENST00000460696 FOXD1Q16676 465 aa15.98■□□□□ 0.15
NPHP4-204ENST00000460696 MRS2Q9HD23 443 aa15.98■□□□□ 0.15
NPHP4-204ENST00000460696 PPP1R15AO75807 674 aaPredicted RBP15.95■□□□□ 0.14
NPHP4-204ENST00000460696 ERICH3Q5RHP9 1530 aa15.95■□□□□ 0.14
NPHP4-204ENST00000460696 PEG3Q9GZU2 1588 aa15.95■□□□□ 0.14
NPHP4-204ENST00000460696 TIMELESSQ9UNS1 1208 aa15.94■□□□□ 0.14
NPHP4-204ENST00000460696 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
NPHP4-204ENST00000460696 SENP3-EIF4A1A0A087X0R7 540 aa15.94■□□□□ 0.14
NPHP4-204ENST00000460696 SUPT16HQ9Y5B9 1047 aaKnown RBP15.94■□□□□ 0.14
NPHP4-204ENST00000460696 PHLDB1Q86UU1 1377 aa15.94■□□□□ 0.14
NPHP4-204ENST00000460696 STAG3Q9UJ98 1225 aa15.91■□□□□ 0.14
NPHP4-204ENST00000460696 SALL2Q9Y467 1007 aaPredicted RBP15.91■□□□□ 0.14
NPHP4-204ENST00000460696 FAM69CQ0P6D2 419 aa15.91■□□□□ 0.14
NPHP4-204ENST00000460696 TOPBP1Q92547 1522 aa15.88■□□□□ 0.13
NPHP4-204ENST00000460696 RGL3Q3MIN7 710 aa15.86■□□□□ 0.13
NPHP4-204ENST00000460696 CARMIL2Q6F5E8 1435 aa15.86■□□□□ 0.13
NPHP4-204ENST00000460696 TMC1Q8TDI8 760 aa15.85■□□□□ 0.13
NPHP4-204ENST00000460696 ZNF608Q9ULD9 1512 aaPredicted RBP15.85■□□□□ 0.13
NPHP4-204ENST00000460696 LRRC9Q6ZRR7 1453 aa15.85■□□□□ 0.13
NPHP4-204ENST00000460696 HSPA5P11021 654 aaKnown RBP15.85■□□□□ 0.13
NPHP4-204ENST00000460696 POLA1P09884 1462 aaPredicted RBP15.85■□□□□ 0.13
NPHP4-204ENST00000460696 MPHOSPH9Q99550 1183 aa15.85■□□□□ 0.13
NPHP4-204ENST00000460696 RRBP1Q9P2E9 1410 aaKnown RBP15.84■□□□□ 0.13
NPHP4-204ENST00000460696 PTPRGP23470 1445 aa15.82■□□□□ 0.12
NPHP4-204ENST00000460696 L3MBTL2Q969R5 705 aa15.79■□□□□ 0.12
NPHP4-204ENST00000460696 LAMC3Q9Y6N6 1575 aa15.78■□□□□ 0.12
NPHP4-204ENST00000460696 CCER2I3L3R5 266 aa15.77■□□□□ 0.12
NPHP4-204ENST00000460696 CARD11Q9BXL7 1154 aa15.77■□□□□ 0.12
NPHP4-204ENST00000460696 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.12
NPHP4-204ENST00000460696 SNAPC4Q5SXM2 1469 aa15.77■□□□□ 0.11
NPHP4-204ENST00000460696 IFT140Q96RY7 1462 aa15.76■□□□□ 0.11
NPHP4-204ENST00000460696 PLEKHG5O94827 1062 aa15.76■□□□□ 0.11
NPHP4-204ENST00000460696 AEBP2Q6ZN18 517 aaPredicted RBP15.76■□□□□ 0.11
NPHP4-204ENST00000460696 GGT6Q6P531 493 aa15.76■□□□□ 0.11
NPHP4-204ENST00000460696 FGD6Q6ZV73 1430 aa15.75■□□□□ 0.11
NPHP4-204ENST00000460696 PKD2Q13563 968 aa15.75■□□□□ 0.11
NPHP4-204ENST00000460696 GRIN2BQ13224 1484 aa15.75■□□□□ 0.11
NPHP4-204ENST00000460696 CCDC18Q5T9S5 1454 aa15.74■□□□□ 0.11
NPHP4-204ENST00000460696 CASKIN1Q8WXD9 1431 aa15.72■□□□□ 0.11
NPHP4-204ENST00000460696 DAXXQ9UER7 740 aaPredicted RBP15.72■□□□□ 0.11
NPHP4-204ENST00000460696 DCAF11Q8TEB1 546 aa15.71■□□□□ 0.11
NPHP4-204ENST00000460696 PRG4Q92954 1404 aaPredicted RBP15.7■□□□□ 0.1
NPHP4-204ENST00000460696 ZNF644Q9H582 1327 aaPredicted RBP15.7■□□□□ 0.1
NPHP4-204ENST00000460696 BIVM-ERCC5R4GMW8 1640 aa15.7■□□□□ 0.1
NPHP4-204ENST00000460696 TIAM1Q13009 1591 aa15.7■□□□□ 0.1
NPHP4-204ENST00000460696 CCDC136Q96JN2 1154 aa15.69■□□□□ 0.1
NPHP4-204ENST00000460696 MYOM3Q5VTT5 1437 aa15.67■□□□□ 0.1
NPHP4-204ENST00000460696 NCOA2Q15596 1464 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 222.6 ms