RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 ARAP1Q96P48 1450 aa17.86■□□□□ 0.45
SYNE2-207ENST00000458046 UBTFP17480 764 aaKnown RBP17.83■□□□□ 0.44
SYNE2-207ENST00000458046 CEP162Q5TB80 1403 aa17.81■□□□□ 0.44
SYNE2-207ENST00000458046 RUSC2Q8N2Y8 1516 aa17.81■□□□□ 0.44
SYNE2-207ENST00000458046 KDM2AQ9Y2K7 1162 aa17.77■□□□□ 0.44
SYNE2-207ENST00000458046 TNIKQ9UKE5 1360 aa17.76■□□□□ 0.43
SYNE2-207ENST00000458046 WRNQ14191 1432 aaPredicted RBP eCLIP17.75■□□□□ 0.43
SYNE2-207ENST00000458046 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
SYNE2-207ENST00000458046 FBXO3Q9UK99 471 aa17.72■□□□□ 0.43
SYNE2-207ENST00000458046 ADRA2BP18089 450 aa17.69■□□□□ 0.42
SYNE2-207ENST00000458046 VSIG10Q8N0Z9 540 aa17.69■□□□□ 0.42
SYNE2-207ENST00000458046 EEA1Q15075 1411 aa17.69■□□□□ 0.42
SYNE2-207ENST00000458046 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
SYNE2-207ENST00000458046 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
SYNE2-207ENST00000458046 GOLGA3Q08378 1498 aa17.62■□□□□ 0.41
SYNE2-207ENST00000458046 FBLN2P98095 1184 aa17.62■□□□□ 0.41
SYNE2-207ENST00000458046 PEG3Q9GZU2 1588 aa17.56■□□□□ 0.4
SYNE2-207ENST00000458046 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
SYNE2-207ENST00000458046 SYNJ1O43426 1573 aa17.55■□□□□ 0.4
SYNE2-207ENST00000458046 FKBP8Q14318 412 aa17.54■□□□□ 0.4
SYNE2-207ENST00000458046 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
SYNE2-207ENST00000458046 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
SYNE2-207ENST00000458046 CEP164Q9UPV0 1460 aa17.51■□□□□ 0.39
SYNE2-207ENST00000458046 CLIP1P30622 1438 aa17.47■□□□□ 0.39
SYNE2-207ENST00000458046 HECW2Q9P2P5 1572 aa17.47■□□□□ 0.39
SYNE2-207ENST00000458046 BCL11AQ9H165 835 aa17.45■□□□□ 0.38
SYNE2-207ENST00000458046 NEUROD1Q13562 356 aa17.45■□□□□ 0.38
SYNE2-207ENST00000458046 ACIN1Q9UKV3 1341 aaKnown RBP17.44■□□□□ 0.38
SYNE2-207ENST00000458046 KDM4FA0A1W2PPD8 638 aa17.43■□□□□ 0.38
SYNE2-207ENST00000458046 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
SYNE2-207ENST00000458046 KIF21BO75037 1637 aa17.41■□□□□ 0.38
SYNE2-207ENST00000458046 ZNF316A6NFI3 1004 aaPredicted RBP17.38■□□□□ 0.37
SYNE2-207ENST00000458046 VPS8Q8N3P4 1428 aa17.37■□□□□ 0.37
SYNE2-207ENST00000458046 PPP6R1Q9UPN7 881 aa17.37■□□□□ 0.37
SYNE2-207ENST00000458046 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
SYNE2-207ENST00000458046 CENPBP07199 599 aaPredicted RBP17.32■□□□□ 0.36
SYNE2-207ENST00000458046 PDIA4P13667 645 aaKnown RBP17.31■□□□□ 0.36
SYNE2-207ENST00000458046 CHD1O14646 1710 aa17.31■□□□□ 0.36
SYNE2-207ENST00000458046 CHMP4AQ9BY43 222 aa17.3■□□□□ 0.36
SYNE2-207ENST00000458046 ILDR2Q71H61 639 aa17.29■□□□□ 0.36
SYNE2-207ENST00000458046 TOP2BQ02880 1626 aa17.28■□□□□ 0.36
SYNE2-207ENST00000458046 NPM3O75607 178 aaKnown RBP17.27■□□□□ 0.36
SYNE2-207ENST00000458046 IFT140Q96RY7 1462 aa17.27■□□□□ 0.35
SYNE2-207ENST00000458046 CLASP1Q7Z460 1538 aa17.25■□□□□ 0.35
SYNE2-207ENST00000458046 KIF13AQ9H1H9 1805 aa17.24■□□□□ 0.35
SYNE2-207ENST00000458046 YTHDC1Q96MU7 727 aaKnown RBP17.23■□□□□ 0.35
SYNE2-207ENST00000458046 SPATA31D1Q6ZQQ2 1576 aa17.22■□□□□ 0.35
SYNE2-207ENST00000458046 DISP3Q9P2K9 1392 aa17.21■□□□□ 0.34
SYNE2-207ENST00000458046 SAMD1Q6SPF0 538 aaPredicted RBP17.19■□□□□ 0.34
SYNE2-207ENST00000458046 MIER1Q8N108 512 aa17.19■□□□□ 0.34
SYNE2-207ENST00000458046 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
SYNE2-207ENST00000458046 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
SYNE2-207ENST00000458046 BIVM-ERCC5R4GMW8 1640 aa17.17■□□□□ 0.34
SYNE2-207ENST00000458046 SYNJ2O15056 1496 aa17.15■□□□□ 0.34
SYNE2-207ENST00000458046 CUX1P39880 1505 aa17.15■□□□□ 0.34
SYNE2-207ENST00000458046 IGSF3O75054 1194 aa17.14■□□□□ 0.33
SYNE2-207ENST00000458046 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
SYNE2-207ENST00000458046 KIF27Q86VH2 1401 aa17.11■□□□□ 0.33
SYNE2-207ENST00000458046 UBE2Q2Q8WVN8 375 aa17.1■□□□□ 0.33
SYNE2-207ENST00000458046 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
SYNE2-207ENST00000458046 KDM6BO15054 1643 aa17.09■□□□□ 0.33
SYNE2-207ENST00000458046 EIF4G3O43432 1585 aaKnown RBP17.07■□□□□ 0.32
SYNE2-207ENST00000458046 CFTRP13569 1480 aa17.07■□□□□ 0.32
SYNE2-207ENST00000458046 DHX37Q8IY37 1157 aaKnown RBP17.06■□□□□ 0.32
SYNE2-207ENST00000458046 ADGRL1O94910 1474 aa17.05■□□□□ 0.32
SYNE2-207ENST00000458046 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
SYNE2-207ENST00000458046 URB2Q14146 1524 aaKnown RBP17.05■□□□□ 0.32
SYNE2-207ENST00000458046 ITGAEP38570 1179 aa17.04■□□□□ 0.32
SYNE2-207ENST00000458046 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.31
SYNE2-207ENST00000458046 WDR97A6NE52 1622 aa17■□□□□ 0.31
SYNE2-207ENST00000458046 ARHGAP35Q9NRY4 1499 aa16.99■□□□□ 0.31
SYNE2-207ENST00000458046 CLSPNQ9HAW4 1339 aa16.98■□□□□ 0.31
SYNE2-207ENST00000458046 GAPVD1Q14C86 1478 aa16.98■□□□□ 0.31
SYNE2-207ENST00000458046 IGF1RP08069 1367 aa16.97■□□□□ 0.31
SYNE2-207ENST00000458046 CDK11BP21127 795 aaKnown RBP16.96■□□□□ 0.31
SYNE2-207ENST00000458046 CDK11AQ9UQ88 783 aaPredicted RBP16.96■□□□□ 0.31
SYNE2-207ENST00000458046 RRBP1Q9P2E9 1410 aaKnown RBP16.96■□□□□ 0.3
SYNE2-207ENST00000458046 ZNF608Q9ULD9 1512 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-207ENST00000458046 CCNB3Q8WWL7 1395 aa16.95■□□□□ 0.3
SYNE2-207ENST00000458046 CARMIL1Q5VZK9 1371 aa16.89■□□□□ 0.29
SYNE2-207ENST00000458046 P3H3Q8IVL6 736 aa16.89■□□□□ 0.29
SYNE2-207ENST00000458046 PDE4CQ08493 712 aa16.87■□□□□ 0.29
SYNE2-207ENST00000458046 ATP1B4Q9UN42 357 aaPredicted RBP16.87■□□□□ 0.29
SYNE2-207ENST00000458046 ABCC10Q5T3U5 1492 aa16.87■□□□□ 0.29
SYNE2-207ENST00000458046 PRDM2Q13029 1718 aa16.86■□□□□ 0.29
SYNE2-207ENST00000458046 FGD5Q6ZNL6 1462 aa16.85■□□□□ 0.29
SYNE2-207ENST00000458046 RAB3GAP2Q9H2M9 1393 aa16.82■□□□□ 0.28
SYNE2-207ENST00000458046 FAM50AQ14320 339 aaKnown RBP16.81■□□□□ 0.28
SYNE2-207ENST00000458046 MAPKBP1O60336 1514 aa16.8■□□□□ 0.28
SYNE2-207ENST00000458046 BRD2P25440 801 aaKnown RBP16.79■□□□□ 0.28
SYNE2-207ENST00000458046 TIAM1Q13009 1591 aa16.77■□□□□ 0.28
SYNE2-207ENST00000458046 CFAP44Q96MT7 982 aa16.77■□□□□ 0.28
SYNE2-207ENST00000458046 DIP2BQ9P265 1576 aa16.77■□□□□ 0.27
SYNE2-207ENST00000458046 PHLDB1Q86UU1 1377 aa16.77■□□□□ 0.27
SYNE2-207ENST00000458046 TSHZ2Q9NRE2 1034 aa16.76■□□□□ 0.27
SYNE2-207ENST00000458046 LRRC9Q6ZRR7 1453 aa16.76■□□□□ 0.27
SYNE2-207ENST00000458046 PAXIP1Q6ZW49 1069 aaPredicted RBP16.74■□□□□ 0.27
SYNE2-207ENST00000458046 SETD5Q9C0A6 1442 aa16.73■□□□□ 0.27
SYNE2-207ENST00000458046 NBR1Q14596 966 aa16.73■□□□□ 0.27
SYNE2-207ENST00000458046 SIN3AQ96ST3 1273 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms