RNA–Protein interactions for RNA: ENST00000456957.2

PKNOX1-204, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 3

Gene PKNOX1, Length 569 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-204ENST00000456957 CLASP1Q7Z460 1538 aa26.53■■□□□ 1.84
PKNOX1-204ENST00000456957 EHMT2Q96KQ7 1210 aa26.52■■□□□ 1.84
PKNOX1-204ENST00000456957 KIAA0586Q9BVV6 1533 aa26.45■■□□□ 1.83
PKNOX1-204ENST00000456957 IQGAP2Q13576 1575 aa26.45■■□□□ 1.82
PKNOX1-204ENST00000456957 SHROOM2Q13796 1616 aa26.39■■□□□ 1.82
PKNOX1-204ENST00000456957 UBTFP17480 764 aaKnown RBP26.39■■□□□ 1.82
PKNOX1-204ENST00000456957 LOC105371045A0A1W2PR82 267 aa26.38■■□□□ 1.81
PKNOX1-204ENST00000456957 TNIKQ9UKE5 1360 aa26.32■■□□□ 1.8
PKNOX1-204ENST00000456957 UGGT2Q9NYU1 1516 aa26.3■■□□□ 1.8
PKNOX1-204ENST00000456957 JPH4Q96JJ6 628 aa26.24■■□□□ 1.79
PKNOX1-204ENST00000456957 SAMD9Q5K651 1589 aa26.23■■□□□ 1.79
PKNOX1-204ENST00000456957 ERCC6L2Q5T890 1561 aa26.23■■□□□ 1.79
PKNOX1-204ENST00000456957 PRG4Q92954 1404 aaPredicted RBP26.21■■□□□ 1.79
PKNOX1-204ENST00000456957 KIAA0556O60303 1618 aa26.21■■□□□ 1.79
PKNOX1-204ENST00000456957 DISP1Q96F81 1524 aa26.2■■□□□ 1.79
PKNOX1-204ENST00000456957 EFCAB5A4FU69 1503 aa26.18■■□□□ 1.78
PKNOX1-204ENST00000456957 RANGAP1P46060 587 aaPredicted RBP26.17■■□□□ 1.78
PKNOX1-204ENST00000456957 ARHGEF11O15085 1522 aa26.15■■□□□ 1.78
PKNOX1-204ENST00000456957 RIMBP3CA6NJZ7 1639 aa26.14■■□□□ 1.78
PKNOX1-204ENST00000456957 RIMBP3BA6NNM3 1639 aa26.14■■□□□ 1.78
PKNOX1-204ENST00000456957 RIMBP3Q9UFD9 1639 aa26.14■■□□□ 1.78
PKNOX1-204ENST00000456957 CEP162Q5TB80 1403 aa26.14■■□□□ 1.77
PKNOX1-204ENST00000456957 CARMIL2Q6F5E8 1435 aa26.13■■□□□ 1.77
PKNOX1-204ENST00000456957 ARHGAP35Q9NRY4 1499 aa26.12■■□□□ 1.77
PKNOX1-204ENST00000456957 CLIP1P30622 1438 aa26.11■■□□□ 1.77
PKNOX1-204ENST00000456957 FHOD3Q2V2M9 1422 aa26.04■■□□□ 1.76
PKNOX1-204ENST00000456957 P3H3Q8IVL6 736 aa26.03■■□□□ 1.76
PKNOX1-204ENST00000456957 ARAP1Q96P48 1450 aa26■■□□□ 1.75
PKNOX1-204ENST00000456957 CYB5RLQ6IPT4 315 aa25.98■■□□□ 1.75
PKNOX1-204ENST00000456957 PTPRGP23470 1445 aa25.93■■□□□ 1.74
PKNOX1-204ENST00000456957 TTBK1Q5TCY1 1321 aaPredicted RBP25.91■■□□□ 1.74
PKNOX1-204ENST00000456957 FMN1Q68DA7 1419 aa25.87■■□□□ 1.73
PKNOX1-204ENST00000456957 ABCA8O94911 1581 aa25.86■■□□□ 1.73
PKNOX1-204ENST00000456957 RAPGEF6Q8TEU7 1601 aa25.86■■□□□ 1.73
PKNOX1-204ENST00000456957 PLB1Q6P1J6 1458 aa25.85■■□□□ 1.73
PKNOX1-204ENST00000456957 PCF11O94913 1555 aaKnown RBP25.84■■□□□ 1.73
PKNOX1-204ENST00000456957 ADCY10Q96PN6 1610 aa25.82■■□□□ 1.72
PKNOX1-204ENST00000456957 UACAQ9BZF9 1416 aa25.8■■□□□ 1.72
PKNOX1-204ENST00000456957 ABCC2Q92887 1545 aa25.8■■□□□ 1.72
PKNOX1-204ENST00000456957 VPS8Q8N3P4 1428 aa25.79■■□□□ 1.72
PKNOX1-204ENST00000456957 UHRF1BP1LA0JNW5 1464 aa25.78■■□□□ 1.72
PKNOX1-204ENST00000456957 HECW1Q76N89 1606 aa25.77■■□□□ 1.72
PKNOX1-204ENST00000456957 LRRIQ1Q96JM4 1722 aa25.77■■□□□ 1.72
PKNOX1-204ENST00000456957 CASKIN1Q8WXD9 1431 aa25.75■■□□□ 1.71
PKNOX1-204ENST00000456957 TRHP20396 242 aaPredicted RBP25.75■■□□□ 1.71
PKNOX1-204ENST00000456957 FYCO1Q9BQS8 1478 aa25.74■■□□□ 1.71
PKNOX1-204ENST00000456957 NUP153P49790 1475 aaKnown RBP25.72■■□□□ 1.71
PKNOX1-204ENST00000456957 ZCCHC11Q5TAX3 1644 aaKnown RBP25.69■■□□□ 1.7
PKNOX1-204ENST00000456957 KDM5BQ9UGL1 1544 aa25.65■■□□□ 1.7
PKNOX1-204ENST00000456957 EPRSP07814 1512 aaKnown RBP25.63■■□□□ 1.69
PKNOX1-204ENST00000456957 CDK13Q14004 1512 aaKnown RBP25.63■■□□□ 1.69
PKNOX1-204ENST00000456957 CFAP43Q8NDM7 1665 aa25.62■■□□□ 1.69
PKNOX1-204ENST00000456957 ATP1B4Q9UN42 357 aaPredicted RBP25.62■■□□□ 1.69
PKNOX1-204ENST00000456957 ATP10BO94823 1461 aa25.6■■□□□ 1.69
PKNOX1-204ENST00000456957 CCDC18Q5T9S5 1454 aa25.6■■□□□ 1.69
PKNOX1-204ENST00000456957 ARID3CA6NKF2 412 aa25.59■■□□□ 1.69
PKNOX1-204ENST00000456957 TIAM1Q13009 1591 aa25.55■■□□□ 1.68
PKNOX1-204ENST00000456957 MAPKBP1O60336 1514 aa25.51■■□□□ 1.67
PKNOX1-204ENST00000456957 NPM1P06748 294 aaKnown RBP eCLIP25.5■■□□□ 1.67
PKNOX1-204ENST00000456957 MAP3K1Q13233 1512 aa25.5■■□□□ 1.67
PKNOX1-204ENST00000456957 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.48■■□□□ 1.67
PKNOX1-204ENST00000456957 HNRNPUL2Q1KMD3 747 aaKnown RBP25.48■■□□□ 1.67
PKNOX1-204ENST00000456957 MAGI3Q5TCQ9 1506 aa25.47■■□□□ 1.67
PKNOX1-204ENST00000456957 ASXL2Q76L83 1435 aa25.46■■□□□ 1.67
PKNOX1-204ENST00000456957 WDR7Q9Y4E6 1490 aa25.43■■□□□ 1.66
PKNOX1-204ENST00000456957 EHBP1L1Q8N3D4 1523 aa25.39■■□□□ 1.66
PKNOX1-204ENST00000456957 APLP2Q06481 763 aa25.39■■□□□ 1.66
PKNOX1-204ENST00000456957 LRRC9Q6ZRR7 1453 aa25.38■■□□□ 1.65
PKNOX1-204ENST00000456957 TROQ12816 1431 aaPredicted RBP25.37■■□□□ 1.65
PKNOX1-204ENST00000456957 CDK11AQ9UQ88 783 aaPredicted RBP25.37■■□□□ 1.65
PKNOX1-204ENST00000456957 KIF14Q15058 1648 aa25.37■■□□□ 1.65
PKNOX1-204ENST00000456957 PLEKHD1A6NEE1 506 aa25.36■■□□□ 1.65
PKNOX1-204ENST00000456957 DIP2BQ9P265 1576 aa25.34■■□□□ 1.65
PKNOX1-204ENST00000456957 MTUS2Q5JR59 1369 aa25.33■■□□□ 1.65
PKNOX1-204ENST00000456957 KIF13AQ9H1H9 1805 aa25.33■■□□□ 1.65
PKNOX1-204ENST00000456957 KANK4Q5T7N3 995 aaPredicted RBP25.33■■□□□ 1.65
PKNOX1-204ENST00000456957 SUPT6HQ7KZ85 1726 aaKnown RBP25.32■■□□□ 1.64
PKNOX1-204ENST00000456957 ABCC10Q5T3U5 1492 aa25.28■■□□□ 1.64
PKNOX1-204ENST00000456957 TTC37Q6PGP7 1564 aa25.28■■□□□ 1.64
PKNOX1-204ENST00000456957 GLI2P10070 1586 aa25.27■■□□□ 1.64
PKNOX1-204ENST00000456957 ABCA9Q8IUA7 1624 aa25.27■■□□□ 1.64
PKNOX1-204ENST00000456957 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.27■■□□□ 1.64
PKNOX1-204ENST00000456957 KCNH8Q96L42 1107 aa25.26■■□□□ 1.63
PKNOX1-204ENST00000456957 MAP3K4Q9Y6R4 1608 aa25.23■■□□□ 1.63
PKNOX1-204ENST00000456957 NCOA2Q15596 1464 aa25.21■■□□□ 1.63
PKNOX1-204ENST00000456957 CDC42BPAQ5VT25 1732 aa25.21■■□□□ 1.63
PKNOX1-204ENST00000456957 MYO5CQ9NQX4 1742 aa25.21■■□□□ 1.63
PKNOX1-204ENST00000456957 PPARGC1BQ86YN6 1023 aaKnown RBP25.21■■□□□ 1.63
PKNOX1-204ENST00000456957 AEBP2Q6ZN18 517 aaPredicted RBP25.17■■□□□ 1.62
PKNOX1-204ENST00000456957 ITSN2Q9NZM3 1697 aa25.17■■□□□ 1.62
PKNOX1-204ENST00000456957 PREX2Q70Z35 1606 aa25.16■■□□□ 1.62
PKNOX1-204ENST00000456957 CDC42BPBQ9Y5S2 1711 aa25.15■■□□□ 1.62
PKNOX1-204ENST00000456957 FAM69CQ0P6D2 419 aa25.15■■□□□ 1.62
PKNOX1-204ENST00000456957 TSPOAP1O95153 1857 aa25.15■■□□□ 1.62
PKNOX1-204ENST00000456957 PPRC1Q5VV67 1664 aaKnown RBP25.13■■□□□ 1.61
PKNOX1-204ENST00000456957 GPATCH8Q9UKJ3 1502 aaKnown RBP25.1■■□□□ 1.61
PKNOX1-204ENST00000456957 CD109Q6YHK3 1445 aa25.1■■□□□ 1.61
PKNOX1-204ENST00000456957 CCNB3Q8WWL7 1395 aa25.09■■□□□ 1.61
PKNOX1-204ENST00000456957 PHLDB1Q86UU1 1377 aa25.08■■□□□ 1.61
PKNOX1-204ENST00000456957 ARAP3Q8WWN8 1544 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms