RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 ZNF316A6NFI3 1004 aaPredicted RBP27.37■■□□□ 1.97
SEMA3B-209ENST00000456560 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
SEMA3B-209ENST00000456560 THOC2Q8NI27 1593 aaKnown RBP27.34■■□□□ 1.97
SEMA3B-209ENST00000456560 CCNB3Q8WWL7 1395 aa27.34■■□□□ 1.97
SEMA3B-209ENST00000456560 WDR62O43379 1518 aa27.33■■□□□ 1.97
SEMA3B-209ENST00000456560 FHAD1B1AJZ9 1412 aa27.32■■□□□ 1.96
SEMA3B-209ENST00000456560 CLSPNQ9HAW4 1339 aa27.31■■□□□ 1.96
SEMA3B-209ENST00000456560 DHX57Q6P158 1386 aaKnown RBP27.3■■□□□ 1.96
SEMA3B-209ENST00000456560 LRRC9Q6ZRR7 1453 aa27.27■■□□□ 1.96
SEMA3B-209ENST00000456560 EFCAB5A4FU69 1503 aa27.27■■□□□ 1.96
SEMA3B-209ENST00000456560 ABCA5Q8WWZ7 1642 aa27.25■■□□□ 1.95
SEMA3B-209ENST00000456560 CTTNBP2Q8WZ74 1663 aa27.25■■□□□ 1.95
SEMA3B-209ENST00000456560 CFAP43Q8NDM7 1665 aa27.24■■□□□ 1.95
SEMA3B-209ENST00000456560 PCF11O94913 1555 aaKnown RBP27.23■■□□□ 1.95
SEMA3B-209ENST00000456560 TDRD9Q8NDG6 1382 aaKnown RBP27.23■■□□□ 1.95
SEMA3B-209ENST00000456560 FHOD3Q2V2M9 1422 aa27.19■■□□□ 1.94
SEMA3B-209ENST00000456560 P3H3Q8IVL6 736 aa27.18■■□□□ 1.94
SEMA3B-209ENST00000456560 TARBP1Q13395 1621 aaKnown RBP27.18■■□□□ 1.94
SEMA3B-209ENST00000456560 AQRO60306 1485 aaKnown RBP eCLIP27.17■■□□□ 1.941e-7■■■■□ 24.4
SEMA3B-209ENST00000456560 GAPVD1Q14C86 1478 aa27.16■■□□□ 1.94
SEMA3B-209ENST00000456560 FYCO1Q9BQS8 1478 aa27.16■■□□□ 1.94
SEMA3B-209ENST00000456560 ACIN1Q9UKV3 1341 aaKnown RBP27.16■■□□□ 1.94
SEMA3B-209ENST00000456560 CASKIN1Q8WXD9 1431 aa27.14■■□□□ 1.94
SEMA3B-209ENST00000456560 PHLDB1Q86UU1 1377 aa27.13■■□□□ 1.93
SEMA3B-209ENST00000456560 ZNF608Q9ULD9 1512 aaPredicted RBP27.09■■□□□ 1.93
SEMA3B-209ENST00000456560 IFT140Q96RY7 1462 aa27.08■■□□□ 1.93
SEMA3B-209ENST00000456560 NEUROD1Q13562 356 aa27.06■■□□□ 1.92
SEMA3B-209ENST00000456560 SAMD9Q5K651 1589 aa27.05■■□□□ 1.92
SEMA3B-209ENST00000456560 FMN1Q68DA7 1419 aa27.05■■□□□ 1.92
SEMA3B-209ENST00000456560 ITGAEP38570 1179 aa27.04■■□□□ 1.92
SEMA3B-209ENST00000456560 SNAPC4Q5SXM2 1469 aa27.02■■□□□ 1.92
SEMA3B-209ENST00000456560 RAB3GAP2Q9H2M9 1393 aa27.01■■□□□ 1.91
SEMA3B-209ENST00000456560 ATP1B4Q9UN42 357 aaPredicted RBP27■■□□□ 1.91
SEMA3B-209ENST00000456560 SETD5Q9C0A6 1442 aa26.97■■□□□ 1.91
SEMA3B-209ENST00000456560 CENPBP07199 599 aaPredicted RBP26.96■■□□□ 1.91
SEMA3B-209ENST00000456560 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.94■■□□□ 1.9
SEMA3B-209ENST00000456560 FAM50AQ14320 339 aaKnown RBP26.92■■□□□ 1.9
SEMA3B-209ENST00000456560 EIF4G3O43432 1585 aaKnown RBP26.91■■□□□ 1.9
SEMA3B-209ENST00000456560 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
SEMA3B-209ENST00000456560 MAPKBP1O60336 1514 aa26.9■■□□□ 1.9
SEMA3B-209ENST00000456560 GRIN2BQ13224 1484 aa26.89■■□□□ 1.9
SEMA3B-209ENST00000456560 LRRIQ1Q96JM4 1722 aa26.87■■□□□ 1.89
SEMA3B-209ENST00000456560 MIER1Q8N108 512 aa26.87■■□□□ 1.89
SEMA3B-209ENST00000456560 GTF3C3Q9Y5Q9 886 aa26.86■■□□□ 1.89
SEMA3B-209ENST00000456560 ADAMTS12P58397 1594 aa26.82■■□□□ 1.88
SEMA3B-209ENST00000456560 FGD6Q6ZV73 1430 aa26.82■■□□□ 1.88
SEMA3B-209ENST00000456560 MTUS2Q5JR59 1369 aa26.8■■□□□ 1.88
SEMA3B-209ENST00000456560 IQGAP2Q13576 1575 aa26.74■■□□□ 1.87
SEMA3B-209ENST00000456560 NCOA2Q15596 1464 aa26.73■■□□□ 1.87
SEMA3B-209ENST00000456560 EHBP1L1Q8N3D4 1523 aa26.72■■□□□ 1.87
SEMA3B-209ENST00000456560 SUPT6HQ7KZ85 1726 aaKnown RBP26.7■■□□□ 1.86
SEMA3B-209ENST00000456560 MYOM3Q5VTT5 1437 aa26.69■■□□□ 1.86
SEMA3B-209ENST00000456560 CCDC18Q5T9S5 1454 aa26.68■■□□□ 1.86
SEMA3B-209ENST00000456560 FBLN2P98095 1184 aa26.68■■□□□ 1.86
SEMA3B-209ENST00000456560 ARHGEF11O15085 1522 aa26.67■■□□□ 1.86
SEMA3B-209ENST00000456560 MAGI3Q5TCQ9 1506 aa26.65■■□□□ 1.86
SEMA3B-209ENST00000456560 HECW1Q76N89 1606 aa26.65■■□□□ 1.86
SEMA3B-209ENST00000456560 UGGT2Q9NYU1 1516 aa26.65■■□□□ 1.86
SEMA3B-209ENST00000456560 PTPRKQ15262 1439 aa26.65■■□□□ 1.86
SEMA3B-209ENST00000456560 MAGI1Q96QZ7 1491 aaPredicted RBP26.61■■□□□ 1.85
SEMA3B-209ENST00000456560 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
SEMA3B-209ENST00000456560 HFM1A2PYH4 1435 aa26.6■■□□□ 1.85
SEMA3B-209ENST00000456560 SIN3AQ96ST3 1273 aa26.59■■□□□ 1.85
SEMA3B-209ENST00000456560 TIMELESSQ9UNS1 1208 aa26.59■■□□□ 1.85
SEMA3B-209ENST00000456560 YTHDC1Q96MU7 727 aaKnown RBP26.59■■□□□ 1.85
SEMA3B-209ENST00000456560 EPRSP07814 1512 aaKnown RBP26.58■■□□□ 1.84
SEMA3B-209ENST00000456560 PTPN23Q9H3S7 1636 aa26.57■■□□□ 1.84
SEMA3B-209ENST00000456560 SYNJ2O15056 1496 aa26.55■■□□□ 1.84
SEMA3B-209ENST00000456560 GRIN2AQ12879 1464 aa26.55■■□□□ 1.84
SEMA3B-209ENST00000456560 KIAA0586Q9BVV6 1533 aa26.54■■□□□ 1.84
SEMA3B-209ENST00000456560 TCOF1Q13428 1488 aaKnown RBP26.54■■□□□ 1.84
SEMA3B-209ENST00000456560 NAIPQ13075 1403 aa26.52■■□□□ 1.84
SEMA3B-209ENST00000456560 UACAQ9BZF9 1416 aa26.5■■□□□ 1.83
SEMA3B-209ENST00000456560 CDK13Q14004 1512 aaKnown RBP26.48■■□□□ 1.83
SEMA3B-209ENST00000456560 DISP1Q96F81 1524 aa26.48■■□□□ 1.83
SEMA3B-209ENST00000456560 KIAA0556O60303 1618 aa26.47■■□□□ 1.83
SEMA3B-209ENST00000456560 PPP1R15AO75807 674 aaPredicted RBP26.43■■□□□ 1.82
SEMA3B-209ENST00000456560 MIA2Q96PC5 1412 aa26.43■■□□□ 1.82
SEMA3B-209ENST00000456560 CEP170Q5SW79 1584 aa26.41■■□□□ 1.82
SEMA3B-209ENST00000456560 CHD1O14646 1710 aa26.38■■□□□ 1.81
SEMA3B-209ENST00000456560 AKNAQ7Z591 1439 aa26.37■■□□□ 1.81
SEMA3B-209ENST00000456560 GCC2Q8IWJ2 1684 aa26.37■■□□□ 1.81
SEMA3B-209ENST00000456560 NUP153P49790 1475 aaKnown RBP26.35■■□□□ 1.81
SEMA3B-209ENST00000456560 RAPGEF6Q8TEU7 1601 aa26.34■■□□□ 1.81
SEMA3B-209ENST00000456560 NUP160Q12769 1436 aa26.33■■□□□ 1.81
SEMA3B-209ENST00000456560 ARID3CA6NKF2 412 aa26.3■■□□□ 1.8
SEMA3B-209ENST00000456560 RRP7BPQ9NSQ0 103 aa26.3■■□□□ 1.8
SEMA3B-209ENST00000456560 TONSLQ96HA7 1378 aa26.29■■□□□ 1.8
SEMA3B-209ENST00000456560 CHIC2Q9UKJ5 165 aa26.27■■□□□ 1.8
SEMA3B-209ENST00000456560 MYT1Q01538 1121 aa26.27■■□□□ 1.8
SEMA3B-209ENST00000456560 KDM6BO15054 1643 aa26.24■■□□□ 1.79
SEMA3B-209ENST00000456560 DENND4BO75064 1496 aaPredicted RBP26.23■■□□□ 1.79
SEMA3B-209ENST00000456560 JPH4Q96JJ6 628 aa26.22■■□□□ 1.79
SEMA3B-209ENST00000456560 KDM5BQ9UGL1 1544 aa26.22■■□□□ 1.79
SEMA3B-209ENST00000456560 CDK11AQ9UQ88 783 aaPredicted RBP26.2■■□□□ 1.79
SEMA3B-209ENST00000456560 ROCK1Q13464 1354 aa26.19■■□□□ 1.78
SEMA3B-209ENST00000456560 DAPK1P53355 1430 aa26.19■■□□□ 1.78
SEMA3B-209ENST00000456560 DNMT1P26358 1616 aaKnown RBP26.19■■□□□ 1.78
SEMA3B-209ENST00000456560 DDX10Q13206 875 aaKnown RBP26.18■■□□□ 1.78
SEMA3B-209ENST00000456560 ABCC5O15440 1437 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms