RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 GON4LQ3T8J9 2241 aa6.77□□□□□ -1.33
CSMD3-204ENST00000455883 CALRP27797 417 aaKnown RBP6.76□□□□□ -1.33
CSMD3-204ENST00000455883 A0A0U1RQG5 324 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-204ENST00000455883 SYAP1Q96A49 352 aaPredicted RBP6.74□□□□□ -1.33
CSMD3-204ENST00000455883 FAM50AQ14320 339 aaKnown RBP6.73□□□□□ -1.33
CSMD3-204ENST00000455883 NGEFQ8N5V2 710 aa6.72□□□□□ -1.33
CSMD3-204ENST00000455883 PHF14O94880 888 aa6.72□□□□□ -1.33
CSMD3-204ENST00000455883 HDAC5Q9UQL6 1122 aa6.72□□□□□ -1.33
CSMD3-204ENST00000455883 CSRNP3Q8WYN3 585 aa6.72□□□□□ -1.33
CSMD3-204ENST00000455883 ROCK2O75116 1388 aaKnown RBP6.72□□□□□ -1.33
CSMD3-204ENST00000455883 HTATSF1O43719 755 aaKnown RBP6.72□□□□□ -1.33
CSMD3-204ENST00000455883 SCAF1Q9H7N4 1312 aaKnown RBP6.72□□□□□ -1.33
CSMD3-204ENST00000455883 ABCC9O60706 1549 aa6.71□□□□□ -1.33
CSMD3-204ENST00000455883 AAMPQ13685 434 aa6.71□□□□□ -1.34
CSMD3-204ENST00000455883 TRIM52Q96A61 297 aa6.71□□□□□ -1.34
CSMD3-204ENST00000455883 TMC1Q8TDI8 760 aa6.71□□□□□ -1.34
CSMD3-204ENST00000455883 GOLGA6L1Q8N7Z2 621 aa6.7□□□□□ -1.34
CSMD3-204ENST00000455883 DHX8Q14562 1220 aaKnown RBP6.7□□□□□ -1.34
CSMD3-204ENST00000455883 WDR43Q15061 677 aaKnown RBP eCLIP6.7□□□□□ -1.34
CSMD3-204ENST00000455883 RSPH6AQ9H0K4 717 aa6.7□□□□□ -1.34
CSMD3-204ENST00000455883 CLIP1P30622 1438 aa6.7□□□□□ -1.34
CSMD3-204ENST00000455883 CCER2I3L3R5 266 aa6.7□□□□□ -1.34
CSMD3-204ENST00000455883 GOLGA6L3A6NEY3 463 aa6.69□□□□□ -1.34
CSMD3-204ENST00000455883 MAP7D2Q96T17 732 aa6.69□□□□□ -1.34
CSMD3-204ENST00000455883 MSNP26038 577 aaKnown RBP6.69□□□□□ -1.34
CSMD3-204ENST00000455883 CSPP1Q1MSJ5 1256 aa6.69□□□□□ -1.34
CSMD3-204ENST00000455883 PKNOX2Q96KN3 472 aa6.69□□□□□ -1.34
CSMD3-204ENST00000455883 SLC4A1APQ9BWU0 796 aaKnown RBP6.69□□□□□ -1.34
CSMD3-204ENST00000455883 SCRIBQ14160 1630 aa6.68□□□□□ -1.34
CSMD3-204ENST00000455883 CFAP53Q96M91 514 aa6.68□□□□□ -1.34
CSMD3-204ENST00000455883 EIF4G2P78344 907 aaKnown RBP eCLIP6.67□□□□□ -1.34
CSMD3-204ENST00000455883 HNRNPUQ00839 825 aaKnown RBP eCLIP6.67□□□□□ -1.34
CSMD3-204ENST00000455883 GBP4Q96PP9 640 aa6.67□□□□□ -1.34
CSMD3-204ENST00000455883 KIAA2012Q0VF49 1180 aa6.67□□□□□ -1.34
CSMD3-204ENST00000455883 ISY1Q9ULR0 285 aaKnown RBP6.67□□□□□ -1.34
CSMD3-204ENST00000455883 IL27Q8NEV9 243 aa6.67□□□□□ -1.34
CSMD3-204ENST00000455883 MCCP23508 829 aa6.67□□□□□ -1.34
CSMD3-204ENST00000455883 GOLGA4Q13439 2230 aaKnown RBP6.67□□□□□ -1.34
CSMD3-204ENST00000455883 CALD1Q05682 793 aaKnown RBP6.66□□□□□ -1.34
CSMD3-204ENST00000455883 BAZ1BQ9UIG0 1483 aaKnown RBP6.66□□□□□ -1.34
CSMD3-204ENST00000455883 GOLGA6L4A6NEF3 574 aa6.66□□□□□ -1.34
CSMD3-204ENST00000455883 PTMAP06454 111 aaKnown RBP6.66□□□□□ -1.34
CSMD3-204ENST00000455883 ITGAEP38570 1179 aa6.66□□□□□ -1.34
CSMD3-204ENST00000455883 PPP4R2Q9NY27 417 aa6.66□□□□□ -1.34
CSMD3-204ENST00000455883 WWC1Q8IX03 1113 aa6.66□□□□□ -1.34
CSMD3-204ENST00000455883 KIF27Q86VH2 1401 aa6.66□□□□□ -1.34
CSMD3-204ENST00000455883 SCAPERQ9BY12 1400 aa6.65□□□□□ -1.34
CSMD3-204ENST00000455883 SMARCA2P51531 1590 aa6.65□□□□□ -1.35
CSMD3-204ENST00000455883 MTUS2Q5JR59 1369 aa6.65□□□□□ -1.35
CSMD3-204ENST00000455883 NOP58Q9Y2X3 529 aaKnown RBP6.65□□□□□ -1.35
CSMD3-204ENST00000455883 TNIKQ9UKE5 1360 aa6.64□□□□□ -1.35
CSMD3-204ENST00000455883 EIF3AQ14152 1382 aaKnown RBP6.64□□□□□ -1.35
CSMD3-204ENST00000455883 SETQ01105 290 aaPredicted RBP6.64□□□□□ -1.35
CSMD3-204ENST00000455883 KIF3AQ9Y496 699 aa6.64□□□□□ -1.35
CSMD3-204ENST00000455883 FKBP8Q14318 412 aa6.63□□□□□ -1.35
CSMD3-204ENST00000455883 KTN1Q86UP2 1357 aaKnown RBP6.63□□□□□ -1.35
CSMD3-204ENST00000455883 DNTTIP2Q5QJE6 756 aaKnown RBP6.63□□□□□ -1.35
CSMD3-204ENST00000455883 TAF3Q5VWG9 929 aa6.63□□□□□ -1.35
CSMD3-204ENST00000455883 GPS2Q13227 327 aa6.63□□□□□ -1.35
CSMD3-204ENST00000455883 PDIA4P13667 645 aaKnown RBP6.63□□□□□ -1.35
CSMD3-204ENST00000455883 ATP6V1DQ9Y5K8 247 aa6.62□□□□□ -1.35
CSMD3-204ENST00000455883 TPM4P67936 248 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 MRS2Q9HD23 443 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 SKOR2Q2VWA4 1001 aaPredicted RBP6.61□□□□□ -1.35
CSMD3-204ENST00000455883 ESF1Q9H501 851 aaKnown RBP6.61□□□□□ -1.35
CSMD3-204ENST00000455883 TSPY4P0CV99 314 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 TSPY10P0CW01 314 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 HSCBQ8IWL3 235 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 PDE3BQ13370 1112 aa6.61□□□□□ -1.35
CSMD3-204ENST00000455883 NPM2Q86SE8 214 aaKnown RBP6.6□□□□□ -1.35
CSMD3-204ENST00000455883 TCERG1O14776 1098 aaKnown RBP6.6□□□□□ -1.35
CSMD3-204ENST00000455883 DDX11L8A8MPP1 907 aa6.6□□□□□ -1.35
CSMD3-204ENST00000455883 FMN1Q68DA7 1419 aa6.6□□□□□ -1.35
CSMD3-204ENST00000455883 FTSJ3Q8IY81 847 aaKnown RBP6.59□□□□□ -1.35
CSMD3-204ENST00000455883 IPO8O15397 1037 aaKnown RBP6.59□□□□□ -1.35
CSMD3-204ENST00000455883 NOM1Q5C9Z4 860 aaKnown RBP6.59□□□□□ -1.35
CSMD3-204ENST00000455883 KIF16BQ96L93 1317 aa6.59□□□□□ -1.35
CSMD3-204ENST00000455883 NUDCQ9Y266 331 aa6.59□□□□□ -1.35
CSMD3-204ENST00000455883 CUX1P39880 1505 aa6.58□□□□□ -1.36
CSMD3-204ENST00000455883 MYO10Q9HD67 2058 aa6.58□□□□□ -1.36
CSMD3-204ENST00000455883 HMGB1P09429 215 aaKnown RBP6.58□□□□□ -1.36
CSMD3-204ENST00000455883 MAPK8IP3Q9UPT6 1336 aa6.58□□□□□ -1.36
CSMD3-204ENST00000455883 KNSTRNQ9Y448 316 aa6.58□□□□□ -1.36
CSMD3-204ENST00000455883 CCDC70Q6NSX1 233 aa6.57□□□□□ -1.36
CSMD3-204ENST00000455883 CCNB3Q8WWL7 1395 aa6.57□□□□□ -1.36
CSMD3-204ENST00000455883 CAVIN1Q6NZI2 390 aaKnown RBP6.57□□□□□ -1.36
CSMD3-204ENST00000455883 CAGE1Q8TC20 777 aa6.57□□□□□ -1.36
CSMD3-204ENST00000455883 TNNT3P45378 269 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-204ENST00000455883 NAP1L5Q96NT1 182 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-204ENST00000455883 RALBP1Q15311 655 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 BCL11AQ9H165 835 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 CNGB1Q14028 1251 aaPredicted RBP6.56□□□□□ -1.36
CSMD3-204ENST00000455883 STAC3Q96MF2 364 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 ARHGAP35Q9NRY4 1499 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 LOC105371045A0A1W2PR82 267 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 TPM3P06753 285 aa6.56□□□□□ -1.36
CSMD3-204ENST00000455883 VPS8Q8N3P4 1428 aa6.55□□□□□ -1.36
CSMD3-204ENST00000455883 KANK1Q14678 1352 aa6.55□□□□□ -1.36
CSMD3-204ENST00000455883 ABCC8Q09428 1581 aa6.55□□□□□ -1.36
CSMD3-204ENST00000455883 UACAQ9BZF9 1416 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms