RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 PRXQ9BXM0 1461 aa46.76■■■■■ 5.08
SMARCC1-203ENST00000454240 SHROOM2Q13796 1616 aa46.7■■■■■ 5.07
SMARCC1-203ENST00000454240 KIAA0586Q9BVV6 1533 aa46.69■■■■■ 5.06
SMARCC1-203ENST00000454240 FAM9AQ8IZU1 332 aaPredicted RBP46.63■■■■■ 5.06
SMARCC1-203ENST00000454240 JPH4Q96JJ6 628 aa46.58■■■■■ 5.05
SMARCC1-203ENST00000454240 ERCC6L2Q5T890 1561 aa46.5■■■■■ 5.03
SMARCC1-203ENST00000454240 ARAP1Q96P48 1450 aa46.5■■■■■ 5.03
SMARCC1-203ENST00000454240 IQGAP2Q13576 1575 aa46.46■■■■■ 5.03
SMARCC1-203ENST00000454240 PRG4Q92954 1404 aaPredicted RBP46.45■■■■■ 5.03
SMARCC1-203ENST00000454240 CTTNBP2Q8WZ74 1663 aa46.43■■■■■ 5.02
SMARCC1-203ENST00000454240 KIF21BO75037 1637 aa46.39■■■■■ 5.02
SMARCC1-203ENST00000454240 CYB5RLQ6IPT4 315 aa46.38■■■■■ 5.02
SMARCC1-203ENST00000454240 UGGT2Q9NYU1 1516 aa46.23■■■■■ 4.99
SMARCC1-203ENST00000454240 CARMIL2Q6F5E8 1435 aa46.15■■■■■ 4.98
SMARCC1-203ENST00000454240 DISP1Q96F81 1524 aa46.13■■■■■ 4.97
SMARCC1-203ENST00000454240 GOLGA3Q08378 1498 aa46.09■■■■■ 4.97
SMARCC1-203ENST00000454240 KIAA0556O60303 1618 aa46.02■■■■■ 4.96
SMARCC1-203ENST00000454240 TNIKQ9UKE5 1360 aa45.99■■■■■ 4.95
SMARCC1-203ENST00000454240 EHMT2Q96KQ7 1210 aa45.97■■■■■ 4.95
SMARCC1-203ENST00000454240 UBTFP17480 764 aaKnown RBP45.93■■■■■ 4.94
SMARCC1-203ENST00000454240 PTPRGP23470 1445 aa45.93■■■■■ 4.94
SMARCC1-203ENST00000454240 SAMD9Q5K651 1589 aa45.83■■■■■ 4.93
SMARCC1-203ENST00000454240 TTBK1Q5TCY1 1321 aaPredicted RBP45.79■■■■■ 4.92
SMARCC1-203ENST00000454240 ADCY10Q96PN6 1610 aa45.74■■■■■ 4.91
SMARCC1-203ENST00000454240 RANGAP1P46060 587 aaPredicted RBP45.71■■■■■ 4.91
SMARCC1-203ENST00000454240 P3H3Q8IVL6 736 aa45.68■■■■■ 4.9
SMARCC1-203ENST00000454240 EFCAB5A4FU69 1503 aa45.65■■■■■ 4.9
SMARCC1-203ENST00000454240 UACAQ9BZF9 1416 aa45.64■■■■■ 4.9
SMARCC1-203ENST00000454240 UHRF1BP1LA0JNW5 1464 aa45.61■■■■■ 4.89
SMARCC1-203ENST00000454240 ABCC2Q92887 1545 aa45.56■■■■■ 4.88
SMARCC1-203ENST00000454240 NPM1P06748 294 aaKnown RBP eCLIP45.52■■■■■ 4.88
SMARCC1-203ENST00000454240 PLB1Q6P1J6 1458 aa45.52■■■■■ 4.88
SMARCC1-203ENST00000454240 FHOD3Q2V2M9 1422 aa45.52■■■■■ 4.88
SMARCC1-203ENST00000454240 ABCA8O94911 1581 aa45.51■■■■■ 4.88
SMARCC1-203ENST00000454240 ARHGAP35Q9NRY4 1499 aa45.48■■■■■ 4.87
SMARCC1-203ENST00000454240 MAPKBP1O60336 1514 aa45.4■■■■■ 4.86
SMARCC1-203ENST00000454240 KDM5BQ9UGL1 1544 aa45.39■■■■■ 4.86
SMARCC1-203ENST00000454240 LOC105371045A0A1W2PR82 267 aa45.37■■■■■ 4.85
SMARCC1-203ENST00000454240 RAPGEF6Q8TEU7 1601 aa45.32■■■■■ 4.85
SMARCC1-203ENST00000454240 ZCCHC11Q5TAX3 1644 aaKnown RBP45.31■■■■■ 4.84
SMARCC1-203ENST00000454240 TRHP20396 242 aaPredicted RBP45.31■■■■■ 4.84
SMARCC1-203ENST00000454240 CLIP1P30622 1438 aa45.26■■■■■ 4.84
SMARCC1-203ENST00000454240 FMN1Q68DA7 1419 aa45.21■■■■■ 4.83
SMARCC1-203ENST00000454240 ASXL2Q76L83 1435 aa45.18■■■■■ 4.82
SMARCC1-203ENST00000454240 KIF13AQ9H1H9 1805 aa45.15■■■■■ 4.82
SMARCC1-203ENST00000454240 NUP153P49790 1475 aaKnown RBP45.15■■■■■ 4.82
SMARCC1-203ENST00000454240 ABCC10Q5T3U5 1492 aa45.14■■■■■ 4.82
SMARCC1-203ENST00000454240 ATP10BO94823 1461 aa45.13■■■■■ 4.82
SMARCC1-203ENST00000454240 CEP162Q5TB80 1403 aa45.13■■■■■ 4.82
SMARCC1-203ENST00000454240 DIP2BQ9P265 1576 aa45.09■■■■■ 4.81
SMARCC1-203ENST00000454240 ARID3CA6NKF2 412 aa45.05■■■■■ 4.8
SMARCC1-203ENST00000454240 FAM69CQ0P6D2 419 aa45■■■■■ 4.79
SMARCC1-203ENST00000454240 WDR7Q9Y4E6 1490 aa44.99■■■■■ 4.79
SMARCC1-203ENST00000454240 HECW1Q76N89 1606 aa44.97■■■■■ 4.79
SMARCC1-203ENST00000454240 EPRSP07814 1512 aaKnown RBP44.92■■■■■ 4.78
SMARCC1-203ENST00000454240 GLI2P10070 1586 aa44.91■■■■■ 4.78
SMARCC1-203ENST00000454240 CASKIN1Q8WXD9 1431 aa44.9■■■■■ 4.78
SMARCC1-203ENST00000454240 PCF11O94913 1555 aaKnown RBP44.9■■■■■ 4.78
SMARCC1-203ENST00000454240 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP44.89■■■■■ 4.78
SMARCC1-203ENST00000454240 HNRNPUL2Q1KMD3 747 aaKnown RBP44.89■■■■■ 4.78
SMARCC1-203ENST00000454240 ATP1B4Q9UN42 357 aaPredicted RBP44.88■■■■■ 4.78
SMARCC1-203ENST00000454240 LRRIQ1Q96JM4 1722 aa44.84■■■■■ 4.77
SMARCC1-203ENST00000454240 CDK13Q14004 1512 aaKnown RBP44.84■■■■■ 4.77
SMARCC1-203ENST00000454240 FYCO1Q9BQS8 1478 aa44.8■■■■■ 4.76
SMARCC1-203ENST00000454240 KCNH8Q96L42 1107 aa44.77■■■■■ 4.76
SMARCC1-203ENST00000454240 PLEKHD1A6NEE1 506 aa44.74■■■■■ 4.75
SMARCC1-203ENST00000454240 TSPOAP1O95153 1857 aa44.72■■■■■ 4.75
SMARCC1-203ENST00000454240 MAP3K4Q9Y6R4 1608 aa44.72■■■■■ 4.75
SMARCC1-203ENST00000454240 CCDC18Q5T9S5 1454 aa44.68■■■■■ 4.74
SMARCC1-203ENST00000454240 CFAP43Q8NDM7 1665 aa44.64■■■■■ 4.74
SMARCC1-203ENST00000454240 PPRC1Q5VV67 1664 aaKnown RBP44.62■■■■■ 4.73
SMARCC1-203ENST00000454240 CDK11AQ9UQ88 783 aaPredicted RBP44.61■■■■■ 4.73
SMARCC1-203ENST00000454240 ABCA9Q8IUA7 1624 aa44.6■■■■■ 4.73
SMARCC1-203ENST00000454240 VPS8Q8N3P4 1428 aa44.58■■■■■ 4.73
SMARCC1-203ENST00000454240 CD109Q6YHK3 1445 aa44.55■■■■■ 4.72
SMARCC1-203ENST00000454240 TROQ12816 1431 aaPredicted RBP44.5■■■■■ 4.71
SMARCC1-203ENST00000454240 MAGI3Q5TCQ9 1506 aa44.47■■■■■ 4.71
SMARCC1-203ENST00000454240 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP44.45■■■■■ 4.715e-18■□□□□ 8.8
SMARCC1-203ENST00000454240 TEX14Q8IWB6 1497 aa44.44■■■■■ 4.7
SMARCC1-203ENST00000454240 TTC37Q6PGP7 1564 aa44.39■■■■■ 4.7
SMARCC1-203ENST00000454240 KIF14Q15058 1648 aa44.39■■■■■ 4.7
SMARCC1-203ENST00000454240 KDM6BO15054 1643 aa44.28■■■■■ 4.68
SMARCC1-203ENST00000454240 TIAM1Q13009 1591 aa44.26■■■■■ 4.68
SMARCC1-203ENST00000454240 MTUS2Q5JR59 1369 aa44.23■■■■■ 4.67
SMARCC1-203ENST00000454240 MYO5CQ9NQX4 1742 aa44.21■■■■■ 4.67
SMARCC1-203ENST00000454240 MAP3K1Q13233 1512 aa44.21■■■■■ 4.67
SMARCC1-203ENST00000454240 PLCH2O75038 1416 aa44.19■■■■■ 4.66
SMARCC1-203ENST00000454240 EHBP1L1Q8N3D4 1523 aa44.18■■■■■ 4.66
SMARCC1-203ENST00000454240 NEO1Q92859 1461 aa44.17■■■■■ 4.66
SMARCC1-203ENST00000454240 COL17A1Q9UMD9 1497 aaPredicted RBP44.16■■■■■ 4.66
SMARCC1-203ENST00000454240 PHLDB1Q86UU1 1377 aa44.15■■■■■ 4.66
SMARCC1-203ENST00000454240 ARAP3Q8WWN8 1544 aa44.13■■■■■ 4.65
SMARCC1-203ENST00000454240 FANCAO15360 1455 aa44.11■■■■■ 4.65
SMARCC1-203ENST00000454240 CFAP74Q9C0B2 1584 aa44.1■■■■■ 4.65
SMARCC1-203ENST00000454240 LRRC9Q6ZRR7 1453 aa44.07■■■■■ 4.65
SMARCC1-203ENST00000454240 CDC42BPAQ5VT25 1732 aa44.07■■■■■ 4.64
SMARCC1-203ENST00000454240 CDC42BPBQ9Y5S2 1711 aa44.07■■■■■ 4.64
SMARCC1-203ENST00000454240 PREX2Q70Z35 1606 aa44.04■■■■■ 4.64
SMARCC1-203ENST00000454240 AKNAQ7Z591 1439 aa44.03■■■■■ 4.64
SMARCC1-203ENST00000454240 APLP2Q06481 763 aa44.01■■■■■ 4.64
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms