RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CHD1O14646 1710 aa14.71□□□□□ -0.06
SYNE1-214ENST00000454018 ADAMTS12P58397 1594 aa14.71□□□□□ -0.06
SYNE1-214ENST00000454018 SNAPC4Q5SXM2 1469 aa14.69□□□□□ -0.06
SYNE1-214ENST00000454018 EEA1Q15075 1411 aa14.67□□□□□ -0.06
SYNE1-214ENST00000454018 RUSC2Q8N2Y8 1516 aa14.64□□□□□ -0.07
SYNE1-214ENST00000454018 SYNJ2O15056 1496 aa14.63□□□□□ -0.07
SYNE1-214ENST00000454018 MAPK8IP2Q13387 824 aaPredicted RBP14.61□□□□□ -0.07
SYNE1-214ENST00000454018 FHAD1B1AJZ9 1412 aa14.61□□□□□ -0.07
SYNE1-214ENST00000454018 IGF1RP08069 1367 aa14.59□□□□□ -0.07
SYNE1-214ENST00000454018 GRIN2AQ12879 1464 aa14.58□□□□□ -0.08
SYNE1-214ENST00000454018 KIF21BO75037 1637 aa14.56□□□□□ -0.08
SYNE1-214ENST00000454018 MSH5O43196 834 aa14.54□□□□□ -0.08
SYNE1-214ENST00000454018 CARMIL1Q5VZK9 1371 aa14.54□□□□□ -0.08
SYNE1-214ENST00000454018 CTTNBP2Q8WZ74 1663 aa14.54□□□□□ -0.08
SYNE1-214ENST00000454018 PRXQ9BXM0 1461 aa14.53□□□□□ -0.08
SYNE1-214ENST00000454018 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
SYNE1-214ENST00000454018 CEP170Q5SW79 1584 aa14.51□□□□□ -0.09
SYNE1-214ENST00000454018 CHMP7Q8WUX9 453 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-214ENST00000454018 RNF216Q9NWF9 866 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-214ENST00000454018 NUP160Q12769 1436 aa14.49□□□□□ -0.09
SYNE1-214ENST00000454018 CLASP1Q7Z460 1538 aa14.48□□□□□ -0.09
SYNE1-214ENST00000454018 FBLN2P98095 1184 aa14.48□□□□□ -0.09
SYNE1-214ENST00000454018 FAM9AQ8IZU1 332 aaPredicted RBP14.46□□□□□ -0.1
SYNE1-214ENST00000454018 SHROOM2Q13796 1616 aa14.43□□□□□ -0.1
SYNE1-214ENST00000454018 GOLGA3Q08378 1498 aa14.43□□□□□ -0.1
SYNE1-214ENST00000454018 IQGAP2Q13576 1575 aa14.42□□□□□ -0.1
SYNE1-214ENST00000454018 OSCARQ8IYS5 282 aa14.42□□□□□ -0.1
SYNE1-214ENST00000454018 KIAA0586Q9BVV6 1533 aa14.4□□□□□ -0.1
SYNE1-214ENST00000454018 FKBP8Q14318 412 aa14.37□□□□□ -0.11
SYNE1-214ENST00000454018 SLC4A2P04920 1241 aa14.36□□□□□ -0.11
SYNE1-214ENST00000454018 UGGT2Q9NYU1 1516 aa14.32□□□□□ -0.12
SYNE1-214ENST00000454018 ARHGEF11O15085 1522 aa14.3□□□□□ -0.12
SYNE1-214ENST00000454018 RIMBP3CA6NJZ7 1639 aa14.3□□□□□ -0.12
SYNE1-214ENST00000454018 RIMBP3BA6NNM3 1639 aa14.3□□□□□ -0.12
SYNE1-214ENST00000454018 RIMBP3Q9UFD9 1639 aa14.3□□□□□ -0.12
SYNE1-214ENST00000454018 KIAA0556O60303 1618 aa14.29□□□□□ -0.12
SYNE1-214ENST00000454018 SAMD9Q5K651 1589 aa14.28□□□□□ -0.12
SYNE1-214ENST00000454018 EFCAB5A4FU69 1503 aa14.27□□□□□ -0.13
SYNE1-214ENST00000454018 ERCC6L2Q5T890 1561 aa14.26□□□□□ -0.13
SYNE1-214ENST00000454018 UBTFP17480 764 aaKnown RBP14.25□□□□□ -0.13
SYNE1-214ENST00000454018 PRG4Q92954 1404 aaPredicted RBP14.25□□□□□ -0.13
SYNE1-214ENST00000454018 DISP1Q96F81 1524 aa14.24□□□□□ -0.13
SYNE1-214ENST00000454018 JPH4Q96JJ6 628 aa14.24□□□□□ -0.13
SYNE1-214ENST00000454018 CARMIL2Q6F5E8 1435 aa14.24□□□□□ -0.13
SYNE1-214ENST00000454018 TNIKQ9UKE5 1360 aa14.23□□□□□ -0.13
SYNE1-214ENST00000454018 ATXN8OSP0DMR3 200 aa14.23□□□□□ -0.13
SYNE1-214ENST00000454018 DNAJC5Q9H3Z4 198 aa14.23□□□□□ -0.13
SYNE1-214ENST00000454018 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-214ENST00000454018 ARAP1Q96P48 1450 aa14.18□□□□□ -0.14
SYNE1-214ENST00000454018 MYCNP04198 464 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-214ENST00000454018 ARHGAP35Q9NRY4 1499 aa14.15□□□□□ -0.14
SYNE1-214ENST00000454018 CLIP1P30622 1438 aa14.14□□□□□ -0.15
SYNE1-214ENST00000454018 CEP162Q5TB80 1403 aa14.14□□□□□ -0.15
SYNE1-214ENST00000454018 LOC105371045A0A1W2PR82 267 aa14.12□□□□□ -0.15
SYNE1-214ENST00000454018 FHOD3Q2V2M9 1422 aa14.11□□□□□ -0.15
SYNE1-214ENST00000454018 DMRT2Q9Y5R5 561 aa14.1□□□□□ -0.15
SYNE1-214ENST00000454018 PTPRGP23470 1445 aa14.1□□□□□ -0.15
SYNE1-214ENST00000454018 RANGAP1P46060 587 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-214ENST00000454018 RAPGEF6Q8TEU7 1601 aa14.09□□□□□ -0.15
SYNE1-214ENST00000454018 ADCY10Q96PN6 1610 aa14.09□□□□□ -0.15
SYNE1-214ENST00000454018 ABCA8O94911 1581 aa14.08□□□□□ -0.15
SYNE1-214ENST00000454018 FMN1Q68DA7 1419 aa14.07□□□□□ -0.16
SYNE1-214ENST00000454018 ABCC2Q92887 1545 aa14.07□□□□□ -0.16
SYNE1-214ENST00000454018 UHRF1BP1LA0JNW5 1464 aa14.06□□□□□ -0.16
SYNE1-214ENST00000454018 HECW1Q76N89 1606 aa14.05□□□□□ -0.16
SYNE1-214ENST00000454018 PCF11O94913 1555 aaKnown RBP14.04□□□□□ -0.16
SYNE1-214ENST00000454018 UACAQ9BZF9 1416 aa14.04□□□□□ -0.16
SYNE1-214ENST00000454018 P3H3Q8IVL6 736 aa14.04□□□□□ -0.16
SYNE1-214ENST00000454018 PLB1Q6P1J6 1458 aa14.03□□□□□ -0.16
SYNE1-214ENST00000454018 LRRIQ1Q96JM4 1722 aa14.02□□□□□ -0.16
SYNE1-214ENST00000454018 CYB5RLQ6IPT4 315 aa14.02□□□□□ -0.16
SYNE1-214ENST00000454018 ZCCHC11Q5TAX3 1644 aaKnown RBP14.01□□□□□ -0.17
SYNE1-214ENST00000454018 FYCO1Q9BQS8 1478 aa14.01□□□□□ -0.17
SYNE1-214ENST00000454018 TTBK1Q5TCY1 1321 aaPredicted RBP14□□□□□ -0.17
SYNE1-214ENST00000454018 KDM5BQ9UGL1 1544 aa13.98□□□□□ -0.17
SYNE1-214ENST00000454018 NUP153P49790 1475 aaKnown RBP13.98□□□□□ -0.17
SYNE1-214ENST00000454018 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
SYNE1-214ENST00000454018 CASKIN1Q8WXD9 1431 aa13.97□□□□□ -0.17
SYNE1-214ENST00000454018 MAPKBP1O60336 1514 aa13.96□□□□□ -0.17
SYNE1-214ENST00000454018 CFAP43Q8NDM7 1665 aa13.96□□□□□ -0.18
SYNE1-214ENST00000454018 CCDC18Q5T9S5 1454 aa13.94□□□□□ -0.18
SYNE1-214ENST00000454018 EPRSP07814 1512 aaKnown RBP13.92□□□□□ -0.18
SYNE1-214ENST00000454018 CDK13Q14004 1512 aaKnown RBP13.91□□□□□ -0.18
SYNE1-214ENST00000454018 ATP10BO94823 1461 aa13.9□□□□□ -0.18
SYNE1-214ENST00000454018 KIF13AQ9H1H9 1805 aa13.89□□□□□ -0.19
SYNE1-214ENST00000454018 NPM1P06748 294 aaKnown RBP eCLIP13.89□□□□□ -0.19
SYNE1-214ENST00000454018 TIAM1Q13009 1591 aa13.87□□□□□ -0.19
SYNE1-214ENST00000454018 WDR7Q9Y4E6 1490 aa13.87□□□□□ -0.19
SYNE1-214ENST00000454018 DIP2BQ9P265 1576 aa13.85□□□□□ -0.19
SYNE1-214ENST00000454018 MAP3K1Q13233 1512 aa13.85□□□□□ -0.19
SYNE1-214ENST00000454018 ASXL2Q76L83 1435 aa13.85□□□□□ -0.19
SYNE1-214ENST00000454018 ATF5Q9Y2D1 282 aaPredicted RBP13.85□□□□□ -0.19
SYNE1-214ENST00000454018 ATP1B4Q9UN42 357 aaPredicted RBP13.83□□□□□ -0.2
SYNE1-214ENST00000454018 KIF14Q15058 1648 aa13.83□□□□□ -0.2
SYNE1-214ENST00000454018 EHBP1L1Q8N3D4 1523 aa13.83□□□□□ -0.2
SYNE1-214ENST00000454018 ARID3CA6NKF2 412 aa13.82□□□□□ -0.2
SYNE1-214ENST00000454018 GLI2P10070 1586 aa13.81□□□□□ -0.2
SYNE1-214ENST00000454018 MAGI3Q5TCQ9 1506 aa13.81□□□□□ -0.2
SYNE1-214ENST00000454018 ABCC10Q5T3U5 1492 aa13.8□□□□□ -0.2
SYNE1-214ENST00000454018 ABCA9Q8IUA7 1624 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms