RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 FBLN2P98095 1184 aa25.08■■□□□ 1.61
SNX17-204ENST00000453453 CHD1O14646 1710 aa25.07■■□□□ 1.6
SNX17-204ENST00000453453 CLIP1P30622 1438 aa25.04■■□□□ 1.6
SNX17-204ENST00000453453 IQGAP2Q13576 1575 aa24.99■■□□□ 1.59
SNX17-204ENST00000453453 RANGAP1P46060 587 aaPredicted RBP24.99■■□□□ 1.59
SNX17-204ENST00000453453 CEP170Q5SW79 1584 aa24.98■■□□□ 1.59
SNX17-204ENST00000453453 KIAA0586Q9BVV6 1533 aa24.97■■□□□ 1.59
SNX17-204ENST00000453453 NUP160Q12769 1436 aa24.96■■□□□ 1.59
SNX17-204ENST00000453453 EFCAB5A4FU69 1503 aa24.93■■□□□ 1.58
SNX17-204ENST00000453453 ARHGAP35Q9NRY4 1499 aa24.88■■□□□ 1.57
SNX17-204ENST00000453453 UGGT2Q9NYU1 1516 aa24.85■■□□□ 1.57
SNX17-204ENST00000453453 SAMD9Q5K651 1589 aa24.85■■□□□ 1.57
SNX17-204ENST00000453453 ARAP1Q96P48 1450 aa24.82■■□□□ 1.56
SNX17-204ENST00000453453 VPS8Q8N3P4 1428 aa24.77■■□□□ 1.56
SNX17-204ENST00000453453 CLASP1Q7Z460 1538 aa24.74■■□□□ 1.55
SNX17-204ENST00000453453 KIAA0556O60303 1618 aa24.74■■□□□ 1.55
SNX17-204ENST00000453453 P3H3Q8IVL6 736 aa24.73■■□□□ 1.55
SNX17-204ENST00000453453 JPH4Q96JJ6 628 aa24.73■■□□□ 1.55
SNX17-204ENST00000453453 PCGF6Q9BYE7 350 aa24.73■■□□□ 1.55
SNX17-204ENST00000453453 FHOD3Q2V2M9 1422 aa24.73■■□□□ 1.55
SNX17-204ENST00000453453 CARMIL2Q6F5E8 1435 aa24.72■■□□□ 1.55
SNX17-204ENST00000453453 SHROOM2Q13796 1616 aa24.71■■□□□ 1.55
SNX17-204ENST00000453453 DISP1Q96F81 1524 aa24.69■■□□□ 1.54
SNX17-204ENST00000453453 FMN1Q68DA7 1419 aa24.68■■□□□ 1.54
SNX17-204ENST00000453453 DNAJC5Q9H3Z4 198 aa24.67■■□□□ 1.54
SNX17-204ENST00000453453 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
SNX17-204ENST00000453453 PRG4Q92954 1404 aaPredicted RBP24.63■■□□□ 1.53
SNX17-204ENST00000453453 APLP2Q06481 763 aa24.58■■□□□ 1.53
SNX17-204ENST00000453453 PCF11O94913 1555 aaKnown RBP24.58■■□□□ 1.53
SNX17-204ENST00000453453 FYCO1Q9BQS8 1478 aa24.57■■□□□ 1.52
SNX17-204ENST00000453453 CASKIN1Q8WXD9 1431 aa24.55■■□□□ 1.52
SNX17-204ENST00000453453 HECW1Q76N89 1606 aa24.5■■□□□ 1.51
SNX17-204ENST00000453453 TTBK1Q5TCY1 1321 aaPredicted RBP24.48■■□□□ 1.51
SNX17-204ENST00000453453 ATP1B4Q9UN42 357 aaPredicted RBP24.48■■□□□ 1.51
SNX17-204ENST00000453453 ERCC6L2Q5T890 1561 aa24.47■■□□□ 1.51
SNX17-204ENST00000453453 RAPGEF6Q8TEU7 1601 aa24.46■■□□□ 1.51
SNX17-204ENST00000453453 TRIM26Q12899 539 aaPredicted RBP24.46■■□□□ 1.51
SNX17-204ENST00000453453 PTPRGP23470 1445 aa24.45■■□□□ 1.5
SNX17-204ENST00000453453 MAP3K1Q13233 1512 aa24.44■■□□□ 1.5
SNX17-204ENST00000453453 CFAP43Q8NDM7 1665 aa24.44■■□□□ 1.5
SNX17-204ENST00000453453 TIAM1Q13009 1591 aa24.42■■□□□ 1.5
SNX17-204ENST00000453453 CCDC18Q5T9S5 1454 aa24.4■■□□□ 1.5
SNX17-204ENST00000453453 ABCA8O94911 1581 aa24.38■■□□□ 1.49
SNX17-204ENST00000453453 LRRIQ1Q96JM4 1722 aa24.38■■□□□ 1.49
SNX17-204ENST00000453453 ZEB1P37275 1124 aaPredicted RBP24.38■■□□□ 1.49
SNX17-204ENST00000453453 PLB1Q6P1J6 1458 aa24.37■■□□□ 1.49
SNX17-204ENST00000453453 PPARGC1BQ86YN6 1023 aaKnown RBP24.35■■□□□ 1.49
SNX17-204ENST00000453453 EPRSP07814 1512 aaKnown RBP24.34■■□□□ 1.49
SNX17-204ENST00000453453 NUP153P49790 1475 aaKnown RBP24.33■■□□□ 1.49
SNX17-204ENST00000453453 UACAQ9BZF9 1416 aa24.31■■□□□ 1.48
SNX17-204ENST00000453453 LRRC9Q6ZRR7 1453 aa24.28■■□□□ 1.48
SNX17-204ENST00000453453 CDK13Q14004 1512 aaKnown RBP24.27■■□□□ 1.48
SNX17-204ENST00000453453 ABCC2Q92887 1545 aa24.27■■□□□ 1.48
SNX17-204ENST00000453453 ARHGEF11O15085 1522 aa24.27■■□□□ 1.47
SNX17-204ENST00000453453 KANK4Q5T7N3 995 aaPredicted RBP24.24■■□□□ 1.47
SNX17-204ENST00000453453 UHRF1BP1LA0JNW5 1464 aa24.23■■□□□ 1.47
SNX17-204ENST00000453453 MTUS2Q5JR59 1369 aa24.23■■□□□ 1.47
SNX17-204ENST00000453453 ARID3CA6NKF2 412 aa24.22■■□□□ 1.47
SNX17-204ENST00000453453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.22■■□□□ 1.47
SNX17-204ENST00000453453 HNRNPUL2Q1KMD3 747 aaKnown RBP24.22■■□□□ 1.47
SNX17-204ENST00000453453 EHBP1L1Q8N3D4 1523 aa24.22■■□□□ 1.47
SNX17-204ENST00000453453 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
SNX17-204ENST00000453453 PELP1Q8IZL8 1130 aaKnown RBP24.21■■□□□ 1.47
SNX17-204ENST00000453453 RIMBP3CA6NJZ7 1639 aa24.19■■□□□ 1.46
SNX17-204ENST00000453453 RIMBP3BA6NNM3 1639 aa24.19■■□□□ 1.46
SNX17-204ENST00000453453 RIMBP3Q9UFD9 1639 aa24.19■■□□□ 1.46
SNX17-204ENST00000453453 ATP10BO94823 1461 aa24.17■■□□□ 1.46
SNX17-204ENST00000453453 SUPT6HQ7KZ85 1726 aaKnown RBP24.16■■□□□ 1.46
SNX17-204ENST00000453453 ADCY10Q96PN6 1610 aa24.14■■□□□ 1.46
SNX17-204ENST00000453453 MAGI3Q5TCQ9 1506 aa24.13■■□□□ 1.45
SNX17-204ENST00000453453 ZCCHC11Q5TAX3 1644 aaKnown RBP24.12■■□□□ 1.45
SNX17-204ENST00000453453 KDM5BQ9UGL1 1544 aa24.11■■□□□ 1.45
SNX17-204ENST00000453453 TROQ12816 1431 aaPredicted RBP24.09■■□□□ 1.45
SNX17-204ENST00000453453 PLEKHD1A6NEE1 506 aa24.08■■□□□ 1.45
SNX17-204ENST00000453453 NCOA2Q15596 1464 aa24.05■■□□□ 1.44
SNX17-204ENST00000453453 KIF14Q15058 1648 aa24.03■■□□□ 1.44
SNX17-204ENST00000453453 NPM1P06748 294 aaKnown RBP eCLIP24.02■■□□□ 1.44
SNX17-204ENST00000453453 CYB5RLQ6IPT4 315 aa23.99■■□□□ 1.43
SNX17-204ENST00000453453 PHLDB1Q86UU1 1377 aa23.99■■□□□ 1.43
SNX17-204ENST00000453453 RRBP1Q9P2E9 1410 aaKnown RBP23.95■■□□□ 1.43
SNX17-204ENST00000453453 MYOM3Q5VTT5 1437 aa23.95■■□□□ 1.42
SNX17-204ENST00000453453 ITSN2Q9NZM3 1697 aa23.94■■□□□ 1.42
SNX17-204ENST00000453453 CCNB3Q8WWL7 1395 aa23.92■■□□□ 1.42
SNX17-204ENST00000453453 WDR7Q9Y4E6 1490 aa23.91■■□□□ 1.42
SNX17-204ENST00000453453 FGD6Q6ZV73 1430 aa23.9■■□□□ 1.42
SNX17-204ENST00000453453 ASXL2Q76L83 1435 aa23.88■■□□□ 1.41
SNX17-204ENST00000453453 ABCC10Q5T3U5 1492 aa23.87■■□□□ 1.41
SNX17-204ENST00000453453 MIA2Q96PC5 1412 aa23.85■■□□□ 1.41
SNX17-204ENST00000453453 CDC42BPAQ5VT25 1732 aa23.85■■□□□ 1.41
SNX17-204ENST00000453453 KCNH8Q96L42 1107 aa23.84■■□□□ 1.41
SNX17-204ENST00000453453 PTPN23Q9H3S7 1636 aa23.84■■□□□ 1.41
SNX17-204ENST00000453453 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.83■■□□□ 1.41
SNX17-204ENST00000453453 MAPKBP1O60336 1514 aa23.83■■□□□ 1.4
SNX17-204ENST00000453453 GPATCH8Q9UKJ3 1502 aaKnown RBP23.82■■□□□ 1.4
SNX17-204ENST00000453453 TTC37Q6PGP7 1564 aa23.82■■□□□ 1.4
SNX17-204ENST00000453453 MYO5CQ9NQX4 1742 aa23.82■■□□□ 1.4
SNX17-204ENST00000453453 FAM50AQ14320 339 aaKnown RBP23.81■■□□□ 1.4
SNX17-204ENST00000453453 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.81■■□□□ 1.4
SNX17-204ENST00000453453 PREX2Q70Z35 1606 aa23.8■■□□□ 1.4
SNX17-204ENST00000453453 TCOF1Q13428 1488 aaKnown RBP23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms