RNA–Protein interactions for RNA: ENST00000453285.1

SDC4P-201, Transcript of syndecan 4 pseudogene, humanhuman

BASIC

Gene SDC4P, Length 601 nt, Biotype processed pseudogene, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P-201ENST00000453285 SYNJ2O15056 1496 aa9.58□□□□□ -0.88
SDC4P-201ENST00000453285 GRIN2AQ12879 1464 aa9.58□□□□□ -0.88
SDC4P-201ENST00000453285 ARHGAP35Q9NRY4 1499 aa9.56□□□□□ -0.88
SDC4P-201ENST00000453285 ARAP1Q96P48 1450 aa9.55□□□□□ -0.88
SDC4P-201ENST00000453285 CEP170Q5SW79 1584 aa9.54□□□□□ -0.88
SDC4P-201ENST00000453285 RANGAP1P46060 587 aaPredicted RBP9.53□□□□□ -0.88
SDC4P-201ENST00000453285 IQGAP2Q13576 1575 aa9.53□□□□□ -0.88
SDC4P-201ENST00000453285 SAMD9Q5K651 1589 aa9.53□□□□□ -0.88
SDC4P-201ENST00000453285 KIAA0586Q9BVV6 1533 aa9.52□□□□□ -0.88
SDC4P-201ENST00000453285 NUP160Q12769 1436 aa9.52□□□□□ -0.89
SDC4P-201ENST00000453285 CHMP7Q8WUX9 453 aaPredicted RBP9.52□□□□□ -0.89
SDC4P-201ENST00000453285 EFCAB5A4FU69 1503 aa9.51□□□□□ -0.89
SDC4P-201ENST00000453285 VPS8Q8N3P4 1428 aa9.51□□□□□ -0.89
SDC4P-201ENST00000453285 UGGT2Q9NYU1 1516 aa9.5□□□□□ -0.89
SDC4P-201ENST00000453285 FBLN2P98095 1184 aa9.48□□□□□ -0.89
SDC4P-201ENST00000453285 FHOD3Q2V2M9 1422 aa9.46□□□□□ -0.9
SDC4P-201ENST00000453285 DISP1Q96F81 1524 aa9.46□□□□□ -0.9
SDC4P-201ENST00000453285 P3H3Q8IVL6 736 aa9.45□□□□□ -0.9
SDC4P-201ENST00000453285 KIAA0556O60303 1618 aa9.45□□□□□ -0.9
SDC4P-201ENST00000453285 SHROOM2Q13796 1616 aa9.45□□□□□ -0.9
SDC4P-201ENST00000453285 LRRIQ1Q96JM4 1722 aa9.45□□□□□ -0.9
SDC4P-201ENST00000453285 PCF11O94913 1555 aaKnown RBP9.43□□□□□ -0.9
SDC4P-201ENST00000453285 CLASP1Q7Z460 1538 aa9.43□□□□□ -0.9
SDC4P-201ENST00000453285 JPH4Q96JJ6 628 aa9.42□□□□□ -0.9
SDC4P-201ENST00000453285 FMN1Q68DA7 1419 aa9.4□□□□□ -0.9
SDC4P-201ENST00000453285 PPARGC1BQ86YN6 1023 aaKnown RBP9.4□□□□□ -0.9
SDC4P-201ENST00000453285 MAP3K1Q13233 1512 aa9.4□□□□□ -0.91
SDC4P-201ENST00000453285 CASKIN1Q8WXD9 1431 aa9.39□□□□□ -0.91
SDC4P-201ENST00000453285 CFAP43Q8NDM7 1665 aa9.39□□□□□ -0.91
SDC4P-201ENST00000453285 FYCO1Q9BQS8 1478 aa9.39□□□□□ -0.91
SDC4P-201ENST00000453285 TIAM1Q13009 1591 aa9.38□□□□□ -0.91
SDC4P-201ENST00000453285 CARMIL2Q6F5E8 1435 aa9.37□□□□□ -0.91
SDC4P-201ENST00000453285 PRG4Q92954 1404 aaPredicted RBP9.37□□□□□ -0.91
SDC4P-201ENST00000453285 ERCC6L2Q5T890 1561 aa9.37□□□□□ -0.91
SDC4P-201ENST00000453285 RAPGEF6Q8TEU7 1601 aa9.35□□□□□ -0.91
SDC4P-201ENST00000453285 KANK4Q5T7N3 995 aaPredicted RBP9.35□□□□□ -0.91
SDC4P-201ENST00000453285 HECW1Q76N89 1606 aa9.34□□□□□ -0.91
SDC4P-201ENST00000453285 APLP2Q06481 763 aa9.34□□□□□ -0.91
SDC4P-201ENST00000453285 TRIM26Q12899 539 aaPredicted RBP9.34□□□□□ -0.91
SDC4P-201ENST00000453285 ABCA8O94911 1581 aa9.33□□□□□ -0.92
SDC4P-201ENST00000453285 OSCARQ8IYS5 282 aa9.32□□□□□ -0.92
SDC4P-201ENST00000453285 LRRC9Q6ZRR7 1453 aa9.32□□□□□ -0.92
SDC4P-201ENST00000453285 ATP1B4Q9UN42 357 aaPredicted RBP9.31□□□□□ -0.92
SDC4P-201ENST00000453285 NUP153P49790 1475 aaKnown RBP9.31□□□□□ -0.92
SDC4P-201ENST00000453285 PLB1Q6P1J6 1458 aa9.31□□□□□ -0.92
SDC4P-201ENST00000453285 EPRSP07814 1512 aaKnown RBP9.31□□□□□ -0.92
SDC4P-201ENST00000453285 CCDC18Q5T9S5 1454 aa9.3□□□□□ -0.92
SDC4P-201ENST00000453285 PCGF6Q9BYE7 350 aa9.3□□□□□ -0.92
SDC4P-201ENST00000453285 TTBK1Q5TCY1 1321 aaPredicted RBP9.3□□□□□ -0.92
SDC4P-201ENST00000453285 CDK13Q14004 1512 aaKnown RBP9.29□□□□□ -0.92
SDC4P-201ENST00000453285 MAGI3Q5TCQ9 1506 aa9.29□□□□□ -0.92
SDC4P-201ENST00000453285 PTPRGP23470 1445 aa9.29□□□□□ -0.92
SDC4P-201ENST00000453285 SUPT6HQ7KZ85 1726 aaKnown RBP9.26□□□□□ -0.93
SDC4P-201ENST00000453285 EHBP1L1Q8N3D4 1523 aa9.26□□□□□ -0.93
SDC4P-201ENST00000453285 UACAQ9BZF9 1416 aa9.25□□□□□ -0.93
SDC4P-201ENST00000453285 ILDR1Q86SU0 546 aaPredicted RBP9.25□□□□□ -0.93
SDC4P-201ENST00000453285 ATP10BO94823 1461 aa9.25□□□□□ -0.93
SDC4P-201ENST00000453285 ARHGEF11O15085 1522 aa9.24□□□□□ -0.93
SDC4P-201ENST00000453285 ABCC2Q92887 1545 aa9.24□□□□□ -0.93
SDC4P-201ENST00000453285 UHRF1BP1LA0JNW5 1464 aa9.23□□□□□ -0.93
SDC4P-201ENST00000453285 ADCY10Q96PN6 1610 aa9.23□□□□□ -0.93
SDC4P-201ENST00000453285 MTUS2Q5JR59 1369 aa9.23□□□□□ -0.93
SDC4P-201ENST00000453285 RRBP1Q9P2E9 1410 aaKnown RBP9.22□□□□□ -0.93
SDC4P-201ENST00000453285 ARID3CA6NKF2 412 aa9.22□□□□□ -0.93
SDC4P-201ENST00000453285 PHLDB1Q86UU1 1377 aa9.22□□□□□ -0.93
SDC4P-201ENST00000453285 NCOA2Q15596 1464 aa9.21□□□□□ -0.93
SDC4P-201ENST00000453285 ZCCHC11Q5TAX3 1644 aaKnown RBP9.21□□□□□ -0.93
SDC4P-201ENST00000453285 TROQ12816 1431 aaPredicted RBP9.2□□□□□ -0.94
SDC4P-201ENST00000453285 KIF14Q15058 1648 aa9.2□□□□□ -0.94
SDC4P-201ENST00000453285 KDM5BQ9UGL1 1544 aa9.19□□□□□ -0.94
SDC4P-201ENST00000453285 RIMBP3CA6NJZ7 1639 aa9.19□□□□□ -0.94
SDC4P-201ENST00000453285 RIMBP3BA6NNM3 1639 aa9.19□□□□□ -0.94
SDC4P-201ENST00000453285 RIMBP3Q9UFD9 1639 aa9.19□□□□□ -0.94
SDC4P-201ENST00000453285 CDC42BPAQ5VT25 1732 aa9.18□□□□□ -0.94
SDC4P-201ENST00000453285 CDK11AQ9UQ88 783 aaPredicted RBP9.18□□□□□ -0.94
SDC4P-201ENST00000453285 CCNB3Q8WWL7 1395 aa9.17□□□□□ -0.94
SDC4P-201ENST00000453285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.17□□□□□ -0.94
SDC4P-201ENST00000453285 HNRNPUL2Q1KMD3 747 aaKnown RBP9.17□□□□□ -0.94
SDC4P-201ENST00000453285 MYOM3Q5VTT5 1437 aa9.16□□□□□ -0.94
SDC4P-201ENST00000453285 PLEKHD1A6NEE1 506 aa9.16□□□□□ -0.94
SDC4P-201ENST00000453285 ABCC10Q5T3U5 1492 aa9.15□□□□□ -0.94
SDC4P-201ENST00000453285 FGD6Q6ZV73 1430 aa9.15□□□□□ -0.94
SDC4P-201ENST00000453285 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.15□□□□□ -0.94
SDC4P-201ENST00000453285 ITSN2Q9NZM3 1697 aa9.15□□□□□ -0.94
SDC4P-201ENST00000453285 PTPN23Q9H3S7 1636 aa9.15□□□□□ -0.94
SDC4P-201ENST00000453285 CDC42BPBQ9Y5S2 1711 aa9.14□□□□□ -0.95
SDC4P-201ENST00000453285 TCOF1Q13428 1488 aaKnown RBP9.14□□□□□ -0.95
SDC4P-201ENST00000453285 GPATCH8Q9UKJ3 1502 aaKnown RBP9.13□□□□□ -0.95
SDC4P-201ENST00000453285 MIA2Q96PC5 1412 aa9.13□□□□□ -0.95
SDC4P-201ENST00000453285 MYO5CQ9NQX4 1742 aa9.11□□□□□ -0.95
SDC4P-201ENST00000453285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.11□□□□□ -0.95
SDC4P-201ENST00000453285 PREX2Q70Z35 1606 aa9.11□□□□□ -0.95
SDC4P-201ENST00000453285 TTC37Q6PGP7 1564 aa9.11□□□□□ -0.95
SDC4P-201ENST00000453285 FAM50AQ14320 339 aaKnown RBP9.09□□□□□ -0.95
SDC4P-201ENST00000453285 PTPRKQ15262 1439 aa9.08□□□□□ -0.96
SDC4P-201ENST00000453285 DNMT1P26358 1616 aaKnown RBP9.08□□□□□ -0.96
SDC4P-201ENST00000453285 WDR7Q9Y4E6 1490 aa9.08□□□□□ -0.96
SDC4P-201ENST00000453285 ASXL2Q76L83 1435 aa9.07□□□□□ -0.96
SDC4P-201ENST00000453285 ABCA9Q8IUA7 1624 aa9.07□□□□□ -0.96
SDC4P-201ENST00000453285 CYB5RLQ6IPT4 315 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms