RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 OSCARQ8IYS5 282 aa19.05■□□□□ 0.64
SCN9A-204ENST00000452182 CEP170Q5SW79 1584 aa19.04■□□□□ 0.64
SCN9A-204ENST00000452182 CLASP1Q7Z460 1538 aa19■□□□□ 0.63
SCN9A-204ENST00000452182 GOLGA3Q08378 1498 aa19■□□□□ 0.63
SCN9A-204ENST00000452182 KIAA0586Q9BVV6 1533 aa18.97■□□□□ 0.63
SCN9A-204ENST00000452182 CTTNBP2Q8WZ74 1663 aa18.96■□□□□ 0.63
SCN9A-204ENST00000452182 ADRA2BP18089 450 aa18.94■□□□□ 0.62
SCN9A-204ENST00000452182 PPP6R1Q9UPN7 881 aa18.92■□□□□ 0.62
SCN9A-204ENST00000452182 IQGAP2Q13576 1575 aa18.92■□□□□ 0.62
SCN9A-204ENST00000452182 SHROOM2Q13796 1616 aa18.89■□□□□ 0.62
SCN9A-204ENST00000452182 UBTFP17480 764 aaKnown RBP18.87■□□□□ 0.61
SCN9A-204ENST00000452182 JPH4Q96JJ6 628 aa18.85■□□□□ 0.61
SCN9A-204ENST00000452182 UGGT2Q9NYU1 1516 aa18.83■□□□□ 0.61
SCN9A-204ENST00000452182 EHMT2Q96KQ7 1210 aa18.83■□□□□ 0.61
SCN9A-204ENST00000452182 TNIKQ9UKE5 1360 aa18.83■□□□□ 0.6
SCN9A-204ENST00000452182 LOC105371045A0A1W2PR82 267 aa18.79■□□□□ 0.6
SCN9A-204ENST00000452182 PRG4Q92954 1404 aaPredicted RBP18.77■□□□□ 0.6
SCN9A-204ENST00000452182 DNAJC5Q9H3Z4 198 aa18.77■□□□□ 0.6
SCN9A-204ENST00000452182 ARHGEF11O15085 1522 aa18.75■□□□□ 0.59
SCN9A-204ENST00000452182 DISP1Q96F81 1524 aa18.75■□□□□ 0.59
SCN9A-204ENST00000452182 CARMIL2Q6F5E8 1435 aa18.74■□□□□ 0.59
SCN9A-204ENST00000452182 SAMD9Q5K651 1589 aa18.74■□□□□ 0.59
SCN9A-204ENST00000452182 EFCAB5A4FU69 1503 aa18.73■□□□□ 0.59
SCN9A-204ENST00000452182 KIAA0556O60303 1618 aa18.73■□□□□ 0.59
SCN9A-204ENST00000452182 ERCC6L2Q5T890 1561 aa18.72■□□□□ 0.59
SCN9A-204ENST00000452182 RIMBP3CA6NJZ7 1639 aa18.71■□□□□ 0.59
SCN9A-204ENST00000452182 RIMBP3BA6NNM3 1639 aa18.71■□□□□ 0.59
SCN9A-204ENST00000452182 RIMBP3Q9UFD9 1639 aa18.71■□□□□ 0.59
SCN9A-204ENST00000452182 ARHGAP35Q9NRY4 1499 aa18.66■□□□□ 0.58
SCN9A-204ENST00000452182 CLIP1P30622 1438 aa18.65■□□□□ 0.58
SCN9A-204ENST00000452182 CEP162Q5TB80 1403 aa18.65■□□□□ 0.58
SCN9A-204ENST00000452182 RANGAP1P46060 587 aaPredicted RBP18.64■□□□□ 0.57
SCN9A-204ENST00000452182 ARAP1Q96P48 1450 aa18.62■□□□□ 0.57
SCN9A-204ENST00000452182 PTPRGP23470 1445 aa18.6■□□□□ 0.57
SCN9A-204ENST00000452182 FHOD3Q2V2M9 1422 aa18.59■□□□□ 0.57
SCN9A-204ENST00000452182 P3H3Q8IVL6 736 aa18.58■□□□□ 0.56
SCN9A-204ENST00000452182 FMN1Q68DA7 1419 aa18.54■□□□□ 0.56
SCN9A-204ENST00000452182 CYB5RLQ6IPT4 315 aa18.51■□□□□ 0.55
SCN9A-204ENST00000452182 ABCA8O94911 1581 aa18.5■□□□□ 0.55
SCN9A-204ENST00000452182 UACAQ9BZF9 1416 aa18.5■□□□□ 0.55
SCN9A-204ENST00000452182 UHRF1BP1LA0JNW5 1464 aa18.5■□□□□ 0.55
SCN9A-204ENST00000452182 TTBK1Q5TCY1 1321 aaPredicted RBP18.48■□□□□ 0.55
SCN9A-204ENST00000452182 PLB1Q6P1J6 1458 aa18.48■□□□□ 0.55
SCN9A-204ENST00000452182 RAPGEF6Q8TEU7 1601 aa18.47■□□□□ 0.55
SCN9A-204ENST00000452182 ABCC2Q92887 1545 aa18.47■□□□□ 0.55
SCN9A-204ENST00000452182 ADCY10Q96PN6 1610 aa18.46■□□□□ 0.55
SCN9A-204ENST00000452182 CASKIN1Q8WXD9 1431 aa18.43■□□□□ 0.54
SCN9A-204ENST00000452182 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
SCN9A-204ENST00000452182 PCF11O94913 1555 aaKnown RBP18.41■□□□□ 0.54
SCN9A-204ENST00000452182 HECW1Q76N89 1606 aa18.41■□□□□ 0.54
SCN9A-204ENST00000452182 FYCO1Q9BQS8 1478 aa18.41■□□□□ 0.54
SCN9A-204ENST00000452182 NUP153P49790 1475 aaKnown RBP18.4■□□□□ 0.54
SCN9A-204ENST00000452182 KDM5BQ9UGL1 1544 aa18.39■□□□□ 0.54
SCN9A-204ENST00000452182 ZCCHC11Q5TAX3 1644 aaKnown RBP18.35■□□□□ 0.53
SCN9A-204ENST00000452182 NPM1P06748 294 aaKnown RBP eCLIP18.34■□□□□ 0.53
SCN9A-204ENST00000452182 EPRSP07814 1512 aaKnown RBP18.33■□□□□ 0.53
SCN9A-204ENST00000452182 ATP10BO94823 1461 aa18.33■□□□□ 0.53
SCN9A-204ENST00000452182 LRRIQ1Q96JM4 1722 aa18.33■□□□□ 0.53
SCN9A-204ENST00000452182 CCDC18Q5T9S5 1454 aa18.33■□□□□ 0.52
SCN9A-204ENST00000452182 PIAS4Q8N2W9 510 aaPredicted RBP18.31■□□□□ 0.52
SCN9A-204ENST00000452182 MAPKBP1O60336 1514 aa18.31■□□□□ 0.52
SCN9A-204ENST00000452182 ATP1B4Q9UN42 357 aaPredicted RBP18.3■□□□□ 0.52
SCN9A-204ENST00000452182 CDK13Q14004 1512 aaKnown RBP18.28■□□□□ 0.52
SCN9A-204ENST00000452182 MAP3K1Q13233 1512 aa18.26■□□□□ 0.51
SCN9A-204ENST00000452182 ARID3CA6NKF2 412 aa18.25■□□□□ 0.51
SCN9A-204ENST00000452182 CFAP43Q8NDM7 1665 aa18.25■□□□□ 0.51
SCN9A-204ENST00000452182 ASXL2Q76L83 1435 aa18.24■□□□□ 0.51
SCN9A-204ENST00000452182 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.23■□□□□ 0.51
SCN9A-204ENST00000452182 HNRNPUL2Q1KMD3 747 aaKnown RBP18.23■□□□□ 0.51
SCN9A-204ENST00000452182 CDK11AQ9UQ88 783 aaPredicted RBP18.23■□□□□ 0.51
SCN9A-204ENST00000452182 TIAM1Q13009 1591 aa18.22■□□□□ 0.51
SCN9A-204ENST00000452182 WDR7Q9Y4E6 1490 aa18.22■□□□□ 0.51
SCN9A-204ENST00000452182 PLEKHD1A6NEE1 506 aa18.2■□□□□ 0.5
SCN9A-204ENST00000452182 APLP2Q06481 763 aa18.18■□□□□ 0.5
SCN9A-204ENST00000452182 MAGI3Q5TCQ9 1506 aa18.17■□□□□ 0.5
SCN9A-204ENST00000452182 TROQ12816 1431 aaPredicted RBP18.17■□□□□ 0.5
SCN9A-204ENST00000452182 ABCC10Q5T3U5 1492 aa18.15■□□□□ 0.5
SCN9A-204ENST00000452182 EHBP1L1Q8N3D4 1523 aa18.14■□□□□ 0.5
SCN9A-204ENST00000452182 LRRC9Q6ZRR7 1453 aa18.14■□□□□ 0.49
SCN9A-204ENST00000452182 DIP2BQ9P265 1576 aa18.13■□□□□ 0.49
SCN9A-204ENST00000452182 MTUS2Q5JR59 1369 aa18.13■□□□□ 0.49
SCN9A-204ENST00000452182 GLI2P10070 1586 aa18.13■□□□□ 0.49
SCN9A-204ENST00000452182 KIF14Q15058 1648 aa18.11■□□□□ 0.49
SCN9A-204ENST00000452182 KIF13AQ9H1H9 1805 aa18.1■□□□□ 0.49
SCN9A-204ENST00000452182 ABCA9Q8IUA7 1624 aa18.09■□□□□ 0.49
SCN9A-204ENST00000452182 KANK4Q5T7N3 995 aaPredicted RBP18.09■□□□□ 0.49
SCN9A-204ENST00000452182 KCNH8Q96L42 1107 aa18.09■□□□□ 0.49
SCN9A-204ENST00000452182 SUPT6HQ7KZ85 1726 aaKnown RBP18.07■□□□□ 0.48
SCN9A-204ENST00000452182 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.07■□□□□ 0.48
SCN9A-204ENST00000452182 KCNA4P22459 653 aa18.05■□□□□ 0.48
SCN9A-204ENST00000452182 FAM69CQ0P6D2 419 aa18.05■□□□□ 0.48
SCN9A-204ENST00000452182 MAP3K4Q9Y6R4 1608 aa18.05■□□□□ 0.48
SCN9A-204ENST00000452182 TTC37Q6PGP7 1564 aa18.04■□□□□ 0.48
SCN9A-204ENST00000452182 NCOA2Q15596 1464 aa18.02■□□□□ 0.48
SCN9A-204ENST00000452182 CD109Q6YHK3 1445 aa18■□□□□ 0.47
SCN9A-204ENST00000452182 MYO5CQ9NQX4 1742 aa18■□□□□ 0.47
SCN9A-204ENST00000452182 TRHP20396 242 aaPredicted RBP17.99■□□□□ 0.47
SCN9A-204ENST00000452182 ARAP3Q8WWN8 1544 aa17.99■□□□□ 0.47
SCN9A-204ENST00000452182 CDC42BPAQ5VT25 1732 aa17.98■□□□□ 0.47
SCN9A-204ENST00000452182 PLCH2O75038 1416 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms