RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 ARHGEF11O15085 1522 aa17.1■□□□□ 0.33
PKP4-206ENST00000452162 EEA1Q15075 1411 aa17.1■□□□□ 0.33
PKP4-206ENST00000452162 PRXQ9BXM0 1461 aa17.09■□□□□ 0.33
PKP4-206ENST00000452162 PCGF6Q9BYE7 350 aa17.07■□□□□ 0.32
PKP4-206ENST00000452162 EHMT2Q96KQ7 1210 aa17.05■□□□□ 0.32
PKP4-206ENST00000452162 SHROOM2Q13796 1616 aa17.04■□□□□ 0.32
PKP4-206ENST00000452162 KIAA0586Q9BVV6 1533 aa17.04■□□□□ 0.32
PKP4-206ENST00000452162 ERCC6L2Q5T890 1561 aa17.01■□□□□ 0.31
PKP4-206ENST00000452162 JPH4Q96JJ6 628 aa17.01■□□□□ 0.31
PKP4-206ENST00000452162 IQGAP2Q13576 1575 aa16.97■□□□□ 0.31
PKP4-206ENST00000452162 ARAP1Q96P48 1450 aa16.97■□□□□ 0.31
PKP4-206ENST00000452162 CTTNBP2Q8WZ74 1663 aa16.97■□□□□ 0.31
PKP4-206ENST00000452162 PRG4Q92954 1404 aaPredicted RBP16.97■□□□□ 0.31
PKP4-206ENST00000452162 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.31
PKP4-206ENST00000452162 KIF21BO75037 1637 aa16.95■□□□□ 0.3
PKP4-206ENST00000452162 CYB5RLQ6IPT4 315 aa16.95■□□□□ 0.3
PKP4-206ENST00000452162 TNIKQ9UKE5 1360 aa16.91■□□□□ 0.3
PKP4-206ENST00000452162 HRCP23327 699 aa16.91■□□□□ 0.3
PKP4-206ENST00000452162 GOLGA3Q08378 1498 aa16.89■□□□□ 0.29
PKP4-206ENST00000452162 UGGT2Q9NYU1 1516 aa16.88■□□□□ 0.29
PKP4-206ENST00000452162 CEP162Q5TB80 1403 aa16.86■□□□□ 0.29
PKP4-206ENST00000452162 DISP1Q96F81 1524 aa16.85■□□□□ 0.29
PKP4-206ENST00000452162 CARMIL2Q6F5E8 1435 aa16.84■□□□□ 0.29
PKP4-206ENST00000452162 UBTFP17480 764 aaKnown RBP16.82■□□□□ 0.28
PKP4-206ENST00000452162 KIAA0556O60303 1618 aa16.81■□□□□ 0.28
PKP4-206ENST00000452162 TTBK1Q5TCY1 1321 aaPredicted RBP16.8■□□□□ 0.28
PKP4-206ENST00000452162 RANGAP1P46060 587 aaPredicted RBP16.79■□□□□ 0.28
PKP4-206ENST00000452162 PTPRGP23470 1445 aa16.77■□□□□ 0.28
PKP4-206ENST00000452162 P3H3Q8IVL6 736 aa16.75■□□□□ 0.27
PKP4-206ENST00000452162 SAMD9Q5K651 1589 aa16.74■□□□□ 0.27
PKP4-206ENST00000452162 ADCY10Q96PN6 1610 aa16.71■□□□□ 0.27
PKP4-206ENST00000452162 FHOD3Q2V2M9 1422 aa16.67■□□□□ 0.26
PKP4-206ENST00000452162 EFCAB5A4FU69 1503 aa16.67■□□□□ 0.26
PKP4-206ENST00000452162 UACAQ9BZF9 1416 aa16.66■□□□□ 0.26
PKP4-206ENST00000452162 PLB1Q6P1J6 1458 aa16.65■□□□□ 0.26
PKP4-206ENST00000452162 PPARGC1BQ86YN6 1023 aaKnown RBP16.64■□□□□ 0.25
PKP4-206ENST00000452162 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
PKP4-206ENST00000452162 ABCC2Q92887 1545 aa16.63■□□□□ 0.25
PKP4-206ENST00000452162 CLIP1P30622 1438 aa16.63■□□□□ 0.25
PKP4-206ENST00000452162 UHRF1BP1LA0JNW5 1464 aa16.63■□□□□ 0.25
PKP4-206ENST00000452162 ABCA8O94911 1581 aa16.62■□□□□ 0.25
PKP4-206ENST00000452162 NPM1P06748 294 aaKnown RBP eCLIP16.6■□□□□ 0.25
PKP4-206ENST00000452162 KDM5BQ9UGL1 1544 aa16.57■□□□□ 0.24
PKP4-206ENST00000452162 RAPGEF6Q8TEU7 1601 aa16.56■□□□□ 0.24
PKP4-206ENST00000452162 ZCCHC11Q5TAX3 1644 aaKnown RBP16.56■□□□□ 0.24
PKP4-206ENST00000452162 TRHP20396 242 aaPredicted RBP16.56■□□□□ 0.24
PKP4-206ENST00000452162 MAPKBP1O60336 1514 aa16.54■□□□□ 0.24
PKP4-206ENST00000452162 VPS8Q8N3P4 1428 aa16.54■□□□□ 0.24
PKP4-206ENST00000452162 ARID3CA6NKF2 412 aa16.54■□□□□ 0.24
PKP4-206ENST00000452162 FMN1Q68DA7 1419 aa16.51■□□□□ 0.23
PKP4-206ENST00000452162 NUP153P49790 1475 aaKnown RBP16.51■□□□□ 0.23
PKP4-206ENST00000452162 ASXL2Q76L83 1435 aa16.5■□□□□ 0.23
PKP4-206ENST00000452162 KIF13AQ9H1H9 1805 aa16.5■□□□□ 0.23
PKP4-206ENST00000452162 ATP10BO94823 1461 aa16.49■□□□□ 0.23
PKP4-206ENST00000452162 ABCC10Q5T3U5 1492 aa16.46■□□□□ 0.23
PKP4-206ENST00000452162 DIP2BQ9P265 1576 aa16.46■□□□□ 0.23
PKP4-206ENST00000452162 ATP1B4Q9UN42 357 aaPredicted RBP16.45■□□□□ 0.22
PKP4-206ENST00000452162 ZEB1P37275 1124 aaPredicted RBP16.45■□□□□ 0.22
PKP4-206ENST00000452162 FAM69CQ0P6D2 419 aa16.44■□□□□ 0.22
PKP4-206ENST00000452162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
PKP4-206ENST00000452162 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
PKP4-206ENST00000452162 PCF11O94913 1555 aaKnown RBP16.44■□□□□ 0.22
PKP4-206ENST00000452162 HECW1Q76N89 1606 aa16.43■□□□□ 0.22
PKP4-206ENST00000452162 LRRIQ1Q96JM4 1722 aa16.43■□□□□ 0.22
PKP4-206ENST00000452162 WDR7Q9Y4E6 1490 aa16.42■□□□□ 0.22
PKP4-206ENST00000452162 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
PKP4-206ENST00000452162 CASKIN1Q8WXD9 1431 aa16.41■□□□□ 0.22
PKP4-206ENST00000452162 EPRSP07814 1512 aaKnown RBP16.4■□□□□ 0.22
PKP4-206ENST00000452162 KCNH8Q96L42 1107 aa16.39■□□□□ 0.21
PKP4-206ENST00000452162 TSPOAP1O95153 1857 aa16.38■□□□□ 0.21
PKP4-206ENST00000452162 FYCO1Q9BQS8 1478 aa16.37■□□□□ 0.21
PKP4-206ENST00000452162 GLI2P10070 1586 aa16.37■□□□□ 0.21
PKP4-206ENST00000452162 PLEKHD1A6NEE1 506 aa16.34■□□□□ 0.21
PKP4-206ENST00000452162 MAP3K4Q9Y6R4 1608 aa16.32■□□□□ 0.2
PKP4-206ENST00000452162 APLP2Q06481 763 aa16.31■□□□□ 0.2
PKP4-206ENST00000452162 CCDC18Q5T9S5 1454 aa16.31■□□□□ 0.2
PKP4-206ENST00000452162 PPRC1Q5VV67 1664 aaKnown RBP16.3■□□□□ 0.2
PKP4-206ENST00000452162 CFAP43Q8NDM7 1665 aa16.29■□□□□ 0.2
PKP4-206ENST00000452162 CDK11AQ9UQ88 783 aaPredicted RBP16.28■□□□□ 0.2
PKP4-206ENST00000452162 ABCA9Q8IUA7 1624 aa16.28■□□□□ 0.2
PKP4-206ENST00000452162 MAGI3Q5TCQ9 1506 aa16.27■□□□□ 0.2
PKP4-206ENST00000452162 CD109Q6YHK3 1445 aa16.27■□□□□ 0.19
PKP4-206ENST00000452162 TROQ12816 1431 aaPredicted RBP16.25■□□□□ 0.19
PKP4-206ENST00000452162 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.25■□□□□ 0.195e-10■■■■□ 24.2
PKP4-206ENST00000452162 KIF14Q15058 1648 aa16.25■□□□□ 0.19
PKP4-206ENST00000452162 TTC37Q6PGP7 1564 aa16.24■□□□□ 0.19
PKP4-206ENST00000452162 CCER1Q8TC90 406 aaPredicted RBP16.22■□□□□ 0.19
PKP4-206ENST00000452162 TEX14Q8IWB6 1497 aa16.2■□□□□ 0.18
PKP4-206ENST00000452162 TIAM1Q13009 1591 aa16.19■□□□□ 0.18
PKP4-206ENST00000452162 KANK4Q5T7N3 995 aaPredicted RBP16.19■□□□□ 0.18
PKP4-206ENST00000452162 MAP3K1Q13233 1512 aa16.18■□□□□ 0.18
PKP4-206ENST00000452162 MTUS2Q5JR59 1369 aa16.18■□□□□ 0.18
PKP4-206ENST00000452162 MYO5CQ9NQX4 1742 aa16.16■□□□□ 0.18
PKP4-206ENST00000452162 KDM6BO15054 1643 aa16.15■□□□□ 0.18
PKP4-206ENST00000452162 EHBP1L1Q8N3D4 1523 aa16.14■□□□□ 0.18
PKP4-206ENST00000452162 COL17A1Q9UMD9 1497 aaPredicted RBP16.14■□□□□ 0.17
PKP4-206ENST00000452162 PLCH2O75038 1416 aa16.13■□□□□ 0.17
PKP4-206ENST00000452162 RRBP1Q9P2E9 1410 aaKnown RBP16.12■□□□□ 0.17
PKP4-206ENST00000452162 CDC42BPAQ5VT25 1732 aa16.12■□□□□ 0.17
PKP4-206ENST00000452162 CDC42BPBQ9Y5S2 1711 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms