RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 FHOD3Q2V2M9 1422 aa17.94■□□□□ 0.46
COL27A1-202ENST00000451716 RRBP1Q9P2E9 1410 aaKnown RBP17.93■□□□□ 0.46
COL27A1-202ENST00000451716 ERICH6Q7L0X2 663 aa17.93■□□□□ 0.46
COL27A1-202ENST00000451716 KIF21AQ7Z4S6 1674 aa17.92■□□□□ 0.46
COL27A1-202ENST00000451716 CCNB3Q8WWL7 1395 aa17.92■□□□□ 0.46
COL27A1-202ENST00000451716 TIAM1Q13009 1591 aa17.9■□□□□ 0.46
COL27A1-202ENST00000451716 GAPVD1Q14C86 1478 aa17.88■□□□□ 0.45
COL27A1-202ENST00000451716 CUL7Q14999 1698 aa17.87■□□□□ 0.45
COL27A1-202ENST00000451716 ZNF316A6NFI3 1004 aaPredicted RBP17.87■□□□□ 0.45
COL27A1-202ENST00000451716 WDR97A6NE52 1622 aa17.87■□□□□ 0.45
COL27A1-202ENST00000451716 FHAD1B1AJZ9 1412 aa17.87■□□□□ 0.45
COL27A1-202ENST00000451716 PCF11O94913 1555 aaKnown RBP17.86■□□□□ 0.45
COL27A1-202ENST00000451716 DHX57Q6P158 1386 aaKnown RBP17.86■□□□□ 0.45
COL27A1-202ENST00000451716 LRRC9Q6ZRR7 1453 aa17.85■□□□□ 0.45
COL27A1-202ENST00000451716 ABCA5Q8WWZ7 1642 aa17.84■□□□□ 0.45
COL27A1-202ENST00000451716 PHLDB1Q86UU1 1377 aa17.83■□□□□ 0.45
COL27A1-202ENST00000451716 FAM50AQ14320 339 aaKnown RBP17.81■□□□□ 0.44
COL27A1-202ENST00000451716 MAP3K1Q13233 1512 aa17.81■□□□□ 0.44
COL27A1-202ENST00000451716 CTTNBP2Q8WZ74 1663 aa17.8■□□□□ 0.44
COL27A1-202ENST00000451716 EFCAB5A4FU69 1503 aa17.78■□□□□ 0.44
COL27A1-202ENST00000451716 AQRO60306 1485 aaKnown RBP eCLIP17.77■□□□□ 0.444e-7■■■□□ 15.2
COL27A1-202ENST00000451716 TARBP1Q13395 1621 aaKnown RBP17.77■□□□□ 0.44
COL27A1-202ENST00000451716 CASKIN1Q8WXD9 1431 aa17.75■□□□□ 0.43
COL27A1-202ENST00000451716 FYCO1Q9BQS8 1478 aa17.75■□□□□ 0.43
COL27A1-202ENST00000451716 CFAP43Q8NDM7 1665 aa17.74■□□□□ 0.43
COL27A1-202ENST00000451716 RAB3GAP2Q9H2M9 1393 aa17.72■□□□□ 0.43
COL27A1-202ENST00000451716 FMN1Q68DA7 1419 aa17.72■□□□□ 0.43
COL27A1-202ENST00000451716 CLSPNQ9HAW4 1339 aa17.71■□□□□ 0.43
COL27A1-202ENST00000451716 MRC2Q9UBG0 1479 aa17.71■□□□□ 0.43
COL27A1-202ENST00000451716 SNAPC4Q5SXM2 1469 aa17.69■□□□□ 0.42
COL27A1-202ENST00000451716 SAMD9Q5K651 1589 aa17.66■□□□□ 0.42
COL27A1-202ENST00000451716 MTUS2Q5JR59 1369 aa17.66■□□□□ 0.42
COL27A1-202ENST00000451716 ZNF608Q9ULD9 1512 aaPredicted RBP17.66■□□□□ 0.42
COL27A1-202ENST00000451716 SLC24A1O60721 1099 aa17.65■□□□□ 0.42
COL27A1-202ENST00000451716 PBRM1Q86U86 1689 aa17.64■□□□□ 0.41
COL27A1-202ENST00000451716 SETD5Q9C0A6 1442 aa17.64■□□□□ 0.41
COL27A1-202ENST00000451716 ARID3CA6NKF2 412 aa17.62■□□□□ 0.41
COL27A1-202ENST00000451716 NEUROD1Q13562 356 aa17.62■□□□□ 0.41
COL27A1-202ENST00000451716 MIER1Q8N108 512 aa17.62■□□□□ 0.41
COL27A1-202ENST00000451716 LRRIQ1Q96JM4 1722 aa17.6■□□□□ 0.41
COL27A1-202ENST00000451716 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
COL27A1-202ENST00000451716 ADAMTS12P58397 1594 aa17.58■□□□□ 0.41
COL27A1-202ENST00000451716 FGD6Q6ZV73 1430 aa17.57■□□□□ 0.4
COL27A1-202ENST00000451716 ACIN1Q9UKV3 1341 aaKnown RBP17.57■□□□□ 0.4
COL27A1-202ENST00000451716 MAPKBP1O60336 1514 aa17.57■□□□□ 0.4
COL27A1-202ENST00000451716 YTHDC1Q96MU7 727 aaKnown RBP17.57■□□□□ 0.4
COL27A1-202ENST00000451716 SIN3AQ96ST3 1273 aa17.56■□□□□ 0.4
COL27A1-202ENST00000451716 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
COL27A1-202ENST00000451716 IFT140Q96RY7 1462 aa17.56■□□□□ 0.4
COL27A1-202ENST00000451716 IQGAP2Q13576 1575 aa17.55■□□□□ 0.4
COL27A1-202ENST00000451716 WDR62O43379 1518 aa17.54■□□□□ 0.4
COL27A1-202ENST00000451716 NCOA2Q15596 1464 aa17.54■□□□□ 0.4
COL27A1-202ENST00000451716 PTPRKQ15262 1439 aa17.51■□□□□ 0.39
COL27A1-202ENST00000451716 CENPBP07199 599 aaPredicted RBP17.51■□□□□ 0.39
COL27A1-202ENST00000451716 MAGI3Q5TCQ9 1506 aa17.51■□□□□ 0.39
COL27A1-202ENST00000451716 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.49■□□□□ 0.391e-7■■■■■ 28.6
COL27A1-202ENST00000451716 MYOM3Q5VTT5 1437 aa17.48■□□□□ 0.39
COL27A1-202ENST00000451716 FBLN2P98095 1184 aa17.48■□□□□ 0.39
COL27A1-202ENST00000451716 CDK13Q14004 1512 aaKnown RBP17.47■□□□□ 0.39
COL27A1-202ENST00000451716 THOC2Q8NI27 1593 aaKnown RBP17.46■□□□□ 0.39
COL27A1-202ENST00000451716 EIF4G3O43432 1585 aaKnown RBP17.46■□□□□ 0.39
COL27A1-202ENST00000451716 EHBP1L1Q8N3D4 1523 aa17.46■□□□□ 0.39
COL27A1-202ENST00000451716 SUPT6HQ7KZ85 1726 aaKnown RBP17.45■□□□□ 0.38
COL27A1-202ENST00000451716 EPRSP07814 1512 aaKnown RBP17.45■□□□□ 0.38
COL27A1-202ENST00000451716 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
COL27A1-202ENST00000451716 CHMP7Q8WUX9 453 aaPredicted RBP17.43■□□□□ 0.38
COL27A1-202ENST00000451716 CCDC18Q5T9S5 1454 aa17.43■□□□□ 0.38
COL27A1-202ENST00000451716 HECW1Q76N89 1606 aa17.42■□□□□ 0.38
COL27A1-202ENST00000451716 GRIN2AQ12879 1464 aa17.42■□□□□ 0.38
COL27A1-202ENST00000451716 UGGT2Q9NYU1 1516 aa17.42■□□□□ 0.38
COL27A1-202ENST00000451716 KIAA0586Q9BVV6 1533 aa17.42■□□□□ 0.38
COL27A1-202ENST00000451716 RRP7BPQ9NSQ0 103 aa17.41■□□□□ 0.38
COL27A1-202ENST00000451716 DISP1Q96F81 1524 aa17.4■□□□□ 0.38
COL27A1-202ENST00000451716 GTF3C3Q9Y5Q9 886 aa17.4■□□□□ 0.38
COL27A1-202ENST00000451716 HFM1A2PYH4 1435 aa17.39■□□□□ 0.37
COL27A1-202ENST00000451716 PTPN23Q9H3S7 1636 aa17.39■□□□□ 0.37
COL27A1-202ENST00000451716 ARHGEF11O15085 1522 aa17.38■□□□□ 0.37
COL27A1-202ENST00000451716 NAIPQ13075 1403 aa17.38■□□□□ 0.37
COL27A1-202ENST00000451716 KIAA0556O60303 1618 aa17.36■□□□□ 0.37
COL27A1-202ENST00000451716 HIRIP3Q9BW71 556 aaPredicted RBP17.34■□□□□ 0.37
COL27A1-202ENST00000451716 MAGI1Q96QZ7 1491 aaPredicted RBP17.32■□□□□ 0.36
COL27A1-202ENST00000451716 UACAQ9BZF9 1416 aa17.32■□□□□ 0.36
COL27A1-202ENST00000451716 NUP153P49790 1475 aaKnown RBP17.32■□□□□ 0.36
COL27A1-202ENST00000451716 CEP170Q5SW79 1584 aa17.31■□□□□ 0.36
COL27A1-202ENST00000451716 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
COL27A1-202ENST00000451716 ZNF644Q9H582 1327 aaPredicted RBP17.3■□□□□ 0.36
COL27A1-202ENST00000451716 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
COL27A1-202ENST00000451716 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
COL27A1-202ENST00000451716 JPH4Q96JJ6 628 aa17.29■□□□□ 0.36
COL27A1-202ENST00000451716 TCOF1Q13428 1488 aaKnown RBP17.29■□□□□ 0.36
COL27A1-202ENST00000451716 PLB1Q6P1J6 1458 aa17.28■□□□□ 0.36
COL27A1-202ENST00000451716 TONSLQ96HA7 1378 aa17.26■□□□□ 0.35
COL27A1-202ENST00000451716 RAPGEF6Q8TEU7 1601 aa17.26■□□□□ 0.35
COL27A1-202ENST00000451716 TIMELESSQ9UNS1 1208 aa17.26■□□□□ 0.35
COL27A1-202ENST00000451716 MIA2Q96PC5 1412 aa17.25■□□□□ 0.35
COL27A1-202ENST00000451716 PRG4Q92954 1404 aaPredicted RBP17.25■□□□□ 0.35
COL27A1-202ENST00000451716 DDX10Q13206 875 aaKnown RBP17.25■□□□□ 0.35
COL27A1-202ENST00000451716 CDK11AQ9UQ88 783 aaPredicted RBP17.24■□□□□ 0.35
COL27A1-202ENST00000451716 KDM6BO15054 1643 aa17.24■□□□□ 0.35
COL27A1-202ENST00000451716 FOXD1Q16676 465 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms