RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 CARMIL1Q5VZK9 1371 aa17.01■□□□□ 0.31
RFX3-208ENST00000449234 ACIN1Q9UKV3 1341 aaKnown RBP16.99■□□□□ 0.31
RFX3-208ENST00000449234 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
RFX3-208ENST00000449234 CC2D2AQ9P2K1 1620 aa16.97■□□□□ 0.31
RFX3-208ENST00000449234 FGD5Q6ZNL6 1462 aa16.97■□□□□ 0.31
RFX3-208ENST00000449234 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
RFX3-208ENST00000449234 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
RFX3-208ENST00000449234 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
RFX3-208ENST00000449234 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
RFX3-208ENST00000449234 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
RFX3-208ENST00000449234 CCNB3Q8WWL7 1395 aa16.91■□□□□ 0.3
RFX3-208ENST00000449234 DHX57Q6P158 1386 aaKnown RBP16.9■□□□□ 0.3
RFX3-208ENST00000449234 RANGAP1P46060 587 aaPredicted RBP16.9■□□□□ 0.3
RFX3-208ENST00000449234 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
RFX3-208ENST00000449234 DCAF8L1A6NGE4 600 aa16.87■□□□□ 0.29
RFX3-208ENST00000449234 TIAM1Q13009 1591 aa16.86■□□□□ 0.29
RFX3-208ENST00000449234 AQRO60306 1485 aaKnown RBP eCLIP16.85■□□□□ 0.29
RFX3-208ENST00000449234 EFCAB5A4FU69 1503 aa16.85■□□□□ 0.29
RFX3-208ENST00000449234 LAMC3Q9Y6N6 1575 aa16.84■□□□□ 0.29
RFX3-208ENST00000449234 CUL7Q14999 1698 aa16.84■□□□□ 0.29
RFX3-208ENST00000449234 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
RFX3-208ENST00000449234 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.82■□□□□ 0.28
RFX3-208ENST00000449234 LRRC9Q6ZRR7 1453 aa16.81■□□□□ 0.28
RFX3-208ENST00000449234 NEUROD1Q13562 356 aa16.81■□□□□ 0.28
RFX3-208ENST00000449234 POLA1P09884 1462 aaPredicted RBP16.79■□□□□ 0.28
RFX3-208ENST00000449234 TIMELESSQ9UNS1 1208 aa16.77■□□□□ 0.28
RFX3-208ENST00000449234 CASKIN1Q8WXD9 1431 aa16.76■□□□□ 0.27
RFX3-208ENST00000449234 FYCO1Q9BQS8 1478 aa16.75■□□□□ 0.27
RFX3-208ENST00000449234 CFAP43Q8NDM7 1665 aa16.75■□□□□ 0.27
RFX3-208ENST00000449234 SETD5Q9C0A6 1442 aa16.74■□□□□ 0.27
RFX3-208ENST00000449234 PDS5BQ9NTI5 1447 aa16.73■□□□□ 0.27
RFX3-208ENST00000449234 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
RFX3-208ENST00000449234 RAD54L2Q9Y4B4 1467 aa16.71■□□□□ 0.27
RFX3-208ENST00000449234 MIER1Q8N108 512 aa16.7■□□□□ 0.26
RFX3-208ENST00000449234 WDR97A6NE52 1622 aa16.69■□□□□ 0.26
RFX3-208ENST00000449234 CTTNBP2Q8WZ74 1663 aa16.69■□□□□ 0.26
RFX3-208ENST00000449234 RAB3GAP2Q9H2M9 1393 aa16.67■□□□□ 0.26
RFX3-208ENST00000449234 GTF3C3Q9Y5Q9 886 aa16.66■□□□□ 0.26
RFX3-208ENST00000449234 URB2Q14146 1524 aaKnown RBP16.65■□□□□ 0.26
RFX3-208ENST00000449234 PHLDB1Q86UU1 1377 aa16.64■□□□□ 0.26
RFX3-208ENST00000449234 PCF11O94913 1555 aaKnown RBP16.64■□□□□ 0.25
RFX3-208ENST00000449234 ABCA5Q8WWZ7 1642 aa16.64■□□□□ 0.25
RFX3-208ENST00000449234 NESP48681 1621 aa16.63■□□□□ 0.25
RFX3-208ENST00000449234 THOC2Q8NI27 1593 aaKnown RBP16.63■□□□□ 0.25
RFX3-208ENST00000449234 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
RFX3-208ENST00000449234 SAMD9Q5K651 1589 aa16.6■□□□□ 0.25
RFX3-208ENST00000449234 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
RFX3-208ENST00000449234 MAPKBP1O60336 1514 aa16.57■□□□□ 0.24
RFX3-208ENST00000449234 SNAPC4Q5SXM2 1469 aa16.56■□□□□ 0.24
RFX3-208ENST00000449234 RNF39Q9H2S5 420 aa16.56■□□□□ 0.24
RFX3-208ENST00000449234 KIF21AQ7Z4S6 1674 aa16.54■□□□□ 0.24
RFX3-208ENST00000449234 FAM50AQ14320 339 aaKnown RBP16.54■□□□□ 0.24
RFX3-208ENST00000449234 P3H3Q8IVL6 736 aa16.54■□□□□ 0.24
RFX3-208ENST00000449234 FGD6Q6ZV73 1430 aa16.53■□□□□ 0.24
RFX3-208ENST00000449234 ITGAEP38570 1179 aa16.53■□□□□ 0.24
RFX3-208ENST00000449234 GRIN2BQ13224 1484 aa16.52■□□□□ 0.23
RFX3-208ENST00000449234 TARBP1Q13395 1621 aaKnown RBP16.51■□□□□ 0.23
RFX3-208ENST00000449234 MTUS2Q5JR59 1369 aa16.51■□□□□ 0.23
RFX3-208ENST00000449234 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
RFX3-208ENST00000449234 CCDC18Q5T9S5 1454 aa16.49■□□□□ 0.23
RFX3-208ENST00000449234 ATP1B4Q9UN42 357 aaPredicted RBP16.49■□□□□ 0.23
RFX3-208ENST00000449234 EHBP1L1Q8N3D4 1523 aa16.48■□□□□ 0.23
RFX3-208ENST00000449234 HFM1A2PYH4 1435 aa16.46■□□□□ 0.23
RFX3-208ENST00000449234 MYOM3Q5VTT5 1437 aa16.46■□□□□ 0.23
RFX3-208ENST00000449234 PPP1R15AO75807 674 aaPredicted RBP16.45■□□□□ 0.22
RFX3-208ENST00000449234 SUPT6HQ7KZ85 1726 aaKnown RBP16.45■□□□□ 0.22
RFX3-208ENST00000449234 ARHGEF11O15085 1522 aa16.44■□□□□ 0.22
RFX3-208ENST00000449234 UACAQ9BZF9 1416 aa16.44■□□□□ 0.22
RFX3-208ENST00000449234 YTHDC1Q96MU7 727 aaKnown RBP16.43■□□□□ 0.22
RFX3-208ENST00000449234 NCOA2Q15596 1464 aa16.42■□□□□ 0.22
RFX3-208ENST00000449234 TCOF1Q13428 1488 aaKnown RBP16.42■□□□□ 0.22
RFX3-208ENST00000449234 AKNAQ7Z591 1439 aa16.41■□□□□ 0.22
RFX3-208ENST00000449234 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
RFX3-208ENST00000449234 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
RFX3-208ENST00000449234 UGGT2Q9NYU1 1516 aa16.4■□□□□ 0.22
RFX3-208ENST00000449234 MIA2Q96PC5 1412 aa16.39■□□□□ 0.21
RFX3-208ENST00000449234 HECW1Q76N89 1606 aa16.38■□□□□ 0.21
RFX3-208ENST00000449234 PBRM1Q86U86 1689 aa16.37■□□□□ 0.21
RFX3-208ENST00000449234 IFT140Q96RY7 1462 aa16.37■□□□□ 0.21
RFX3-208ENST00000449234 C1QBPQ07021 282 aaKnown RBP16.37■□□□□ 0.21
RFX3-208ENST00000449234 IQGAP2Q13576 1575 aa16.37■□□□□ 0.21
RFX3-208ENST00000449234 ADAMTS12P58397 1594 aa16.36■□□□□ 0.21
RFX3-208ENST00000449234 SIN3AQ96ST3 1273 aa16.36■□□□□ 0.21
RFX3-208ENST00000449234 PTPN23Q9H3S7 1636 aa16.36■□□□□ 0.21
RFX3-208ENST00000449234 NAIPQ13075 1403 aa16.36■□□□□ 0.21
RFX3-208ENST00000449234 LRRIQ1Q96JM4 1722 aa16.34■□□□□ 0.21
RFX3-208ENST00000449234 CCER2I3L3R5 266 aa16.32■□□□□ 0.2
RFX3-208ENST00000449234 PTPRKQ15262 1439 aa16.32■□□□□ 0.2
RFX3-208ENST00000449234 EPRSP07814 1512 aaKnown RBP16.31■□□□□ 0.2
RFX3-208ENST00000449234 KIAA0586Q9BVV6 1533 aa16.31■□□□□ 0.2
RFX3-208ENST00000449234 TONSLQ96HA7 1378 aa16.31■□□□□ 0.2
RFX3-208ENST00000449234 CACNB1Q02641 598 aaPredicted RBP16.29■□□□□ 0.2
RFX3-208ENST00000449234 WDR62O43379 1518 aa16.27■□□□□ 0.2
RFX3-208ENST00000449234 ROCK1Q13464 1354 aa16.26■□□□□ 0.19
RFX3-208ENST00000449234 GCC2Q8IWJ2 1684 aa16.25■□□□□ 0.19
RFX3-208ENST00000449234 CDK11AQ9UQ88 783 aaPredicted RBP16.25■□□□□ 0.19
RFX3-208ENST00000449234 MAGI3Q5TCQ9 1506 aa16.24■□□□□ 0.19
RFX3-208ENST00000449234 SLC4A2P04920 1241 aa16.23■□□□□ 0.19
RFX3-208ENST00000449234 MYT1Q01538 1121 aa16.21■□□□□ 0.19
RFX3-208ENST00000449234 DDX10Q13206 875 aaKnown RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms