RNA–Protein interactions for RNA: ENST00000448190.6

SNHG4-201, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 4

Gene SNHG4, Length 542 nt, Biotype processed transcript, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-201ENST00000448190 RAPGEF2Q9Y4G8 1499 aa22.25■■□□□ 1.15
SNHG4-201ENST00000448190 CUL7Q14999 1698 aa22.24■■□□□ 1.15
SNHG4-201ENST00000448190 EHMT2Q96KQ7 1210 aa22.24■■□□□ 1.15
SNHG4-201ENST00000448190 KIAA0586Q9BVV6 1533 aa22.18■■□□□ 1.14
SNHG4-201ENST00000448190 PRG4Q92954 1404 aaPredicted RBP22.18■■□□□ 1.14
SNHG4-201ENST00000448190 ARAP1Q96P48 1450 aa22.17■■□□□ 1.14
SNHG4-201ENST00000448190 PRXQ9BXM0 1461 aa22.17■■□□□ 1.14
SNHG4-201ENST00000448190 TTBK1Q5TCY1 1321 aaPredicted RBP22.15■■□□□ 1.14
SNHG4-201ENST00000448190 ERCC6L2Q5T890 1561 aa22.15■■□□□ 1.14
SNHG4-201ENST00000448190 EEA1Q15075 1411 aa22.14■■□□□ 1.14
SNHG4-201ENST00000448190 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
SNHG4-201ENST00000448190 SHROOM2Q13796 1616 aa22.04■■□□□ 1.12
SNHG4-201ENST00000448190 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
SNHG4-201ENST00000448190 P3H3Q8IVL6 736 aa21.99■■□□□ 1.11
SNHG4-201ENST00000448190 IQGAP2Q13576 1575 aa21.99■■□□□ 1.11
SNHG4-201ENST00000448190 CARMIL2Q6F5E8 1435 aa21.97■■□□□ 1.11
SNHG4-201ENST00000448190 PTPRGP23470 1445 aa21.95■■□□□ 1.1
SNHG4-201ENST00000448190 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
SNHG4-201ENST00000448190 DISP1Q96F81 1524 aa21.91■■□□□ 1.1
SNHG4-201ENST00000448190 TRHP20396 242 aaPredicted RBP21.9■■□□□ 1.1
SNHG4-201ENST00000448190 UGGT2Q9NYU1 1516 aa21.89■■□□□ 1.09
SNHG4-201ENST00000448190 NPM1P06748 294 aaKnown RBP eCLIP21.85■■□□□ 1.09
SNHG4-201ENST00000448190 KIF21BO75037 1637 aa21.84■■□□□ 1.09
SNHG4-201ENST00000448190 GOLGA3Q08378 1498 aa21.83■■□□□ 1.09
SNHG4-201ENST00000448190 CTTNBP2Q8WZ74 1663 aa21.79■■□□□ 1.08
SNHG4-201ENST00000448190 LOC105371045A0A1W2PR82 267 aa21.78■■□□□ 1.08
SNHG4-201ENST00000448190 KIAA0556O60303 1618 aa21.77■■□□□ 1.07
SNHG4-201ENST00000448190 ARID3CA6NKF2 412 aa21.75■■□□□ 1.07
SNHG4-201ENST00000448190 UACAQ9BZF9 1416 aa21.74■■□□□ 1.07
SNHG4-201ENST00000448190 FHOD3Q2V2M9 1422 aa21.7■■□□□ 1.06
SNHG4-201ENST00000448190 PLB1Q6P1J6 1458 aa21.7■■□□□ 1.06
SNHG4-201ENST00000448190 ADCY10Q96PN6 1610 aa21.69■■□□□ 1.06
SNHG4-201ENST00000448190 FAM69CQ0P6D2 419 aa21.64■■□□□ 1.05
SNHG4-201ENST00000448190 ATP1B4Q9UN42 357 aaPredicted RBP21.63■■□□□ 1.05
SNHG4-201ENST00000448190 ABCC2Q92887 1545 aa21.63■■□□□ 1.05
SNHG4-201ENST00000448190 UHRF1BP1LA0JNW5 1464 aa21.63■■□□□ 1.05
SNHG4-201ENST00000448190 SAMD9Q5K651 1589 aa21.61■■□□□ 1.05
SNHG4-201ENST00000448190 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.6■■□□□ 1.05
SNHG4-201ENST00000448190 HNRNPUL2Q1KMD3 747 aaKnown RBP21.6■■□□□ 1.05
SNHG4-201ENST00000448190 ARHGAP35Q9NRY4 1499 aa21.58■■□□□ 1.05
SNHG4-201ENST00000448190 KCNH8Q96L42 1107 aa21.57■■□□□ 1.04
SNHG4-201ENST00000448190 ASXL2Q76L83 1435 aa21.55■■□□□ 1.04
SNHG4-201ENST00000448190 ABCA8O94911 1581 aa21.55■■□□□ 1.04
SNHG4-201ENST00000448190 KDM5BQ9UGL1 1544 aa21.55■■□□□ 1.04
SNHG4-201ENST00000448190 EFCAB5A4FU69 1503 aa21.54■■□□□ 1.04
SNHG4-201ENST00000448190 CLIP1P30622 1438 aa21.52■■□□□ 1.04
SNHG4-201ENST00000448190 ATP10BO94823 1461 aa21.51■■□□□ 1.03
SNHG4-201ENST00000448190 ABCC10Q5T3U5 1492 aa21.5■■□□□ 1.03
SNHG4-201ENST00000448190 MAPKBP1O60336 1514 aa21.5■■□□□ 1.03
SNHG4-201ENST00000448190 FMN1Q68DA7 1419 aa21.45■■□□□ 1.02
SNHG4-201ENST00000448190 NUP153P49790 1475 aaKnown RBP21.45■■□□□ 1.02
SNHG4-201ENST00000448190 ZCCHC11Q5TAX3 1644 aaKnown RBP21.44■■□□□ 1.02
SNHG4-201ENST00000448190 CEP162Q5TB80 1403 aa21.43■■□□□ 1.02
SNHG4-201ENST00000448190 RAPGEF6Q8TEU7 1601 aa21.42■■□□□ 1.02
SNHG4-201ENST00000448190 PLEKHD1A6NEE1 506 aa21.41■■□□□ 1.02
SNHG4-201ENST00000448190 WDR7Q9Y4E6 1490 aa21.39■■□□□ 1.01
SNHG4-201ENST00000448190 EPRSP07814 1512 aaKnown RBP21.38■■□□□ 1.01
SNHG4-201ENST00000448190 DIP2BQ9P265 1576 aa21.36■■□□□ 1.01
SNHG4-201ENST00000448190 CDK13Q14004 1512 aaKnown RBP21.33■■□□□ 1
SNHG4-201ENST00000448190 CASKIN1Q8WXD9 1431 aa21.3■■□□□ 1
SNHG4-201ENST00000448190 CDK11AQ9UQ88 783 aaPredicted RBP21.3■■□□□ 1
SNHG4-201ENST00000448190 KIF13AQ9H1H9 1805 aa21.29■■□□□ 1
SNHG4-201ENST00000448190 CD109Q6YHK3 1445 aa21.28■■□□□ 1
SNHG4-201ENST00000448190 GLI2P10070 1586 aa21.26■□□□□ 0.99
SNHG4-201ENST00000448190 HECW1Q76N89 1606 aa21.22■□□□□ 0.99
SNHG4-201ENST00000448190 PCF11O94913 1555 aaKnown RBP21.22■□□□□ 0.99
SNHG4-201ENST00000448190 TSPOAP1O95153 1857 aa21.2■□□□□ 0.98
SNHG4-201ENST00000448190 FYCO1Q9BQS8 1478 aa21.19■□□□□ 0.98
SNHG4-201ENST00000448190 TROQ12816 1431 aaPredicted RBP21.14■□□□□ 0.98
SNHG4-201ENST00000448190 CCDC18Q5T9S5 1454 aa21.13■□□□□ 0.97
SNHG4-201ENST00000448190 MAP3K4Q9Y6R4 1608 aa21.13■□□□□ 0.97
SNHG4-201ENST00000448190 VPS8Q8N3P4 1428 aa21.12■□□□□ 0.97
SNHG4-201ENST00000448190 COL17A1Q9UMD9 1497 aaPredicted RBP21.12■□□□□ 0.97
SNHG4-201ENST00000448190 MAGI3Q5TCQ9 1506 aa21.11■□□□□ 0.97
SNHG4-201ENST00000448190 TEX14Q8IWB6 1497 aa21.11■□□□□ 0.97
SNHG4-201ENST00000448190 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.09■□□□□ 0.972e-37■□□□□ 9.1
SNHG4-201ENST00000448190 PPRC1Q5VV67 1664 aaKnown RBP21.09■□□□□ 0.97
SNHG4-201ENST00000448190 MTUS2Q5JR59 1369 aa21.08■□□□□ 0.96
SNHG4-201ENST00000448190 LRRIQ1Q96JM4 1722 aa21.07■□□□□ 0.96
SNHG4-201ENST00000448190 RAPGEF3O95398 923 aa21.07■□□□□ 0.96
SNHG4-201ENST00000448190 ABCA9Q8IUA7 1624 aa21.07■□□□□ 0.96
SNHG4-201ENST00000448190 KANK4Q5T7N3 995 aaPredicted RBP21.05■□□□□ 0.96
SNHG4-201ENST00000448190 EFCAB2Q5VUJ9 269 aa21.05■□□□□ 0.96
SNHG4-201ENST00000448190 CFAP43Q8NDM7 1665 aa21.05■□□□□ 0.96
SNHG4-201ENST00000448190 APLP2Q06481 763 aa21.04■□□□□ 0.96
SNHG4-201ENST00000448190 PLCH2O75038 1416 aa21.04■□□□□ 0.96
SNHG4-201ENST00000448190 KDM6BO15054 1643 aa21.03■□□□□ 0.96
SNHG4-201ENST00000448190 TTC37Q6PGP7 1564 aa21.02■□□□□ 0.96
SNHG4-201ENST00000448190 KIF14Q15058 1648 aa21.02■□□□□ 0.96
SNHG4-201ENST00000448190 ZNF777Q9ULD5 760 aaPredicted RBP21.01■□□□□ 0.95
SNHG4-201ENST00000448190 AKNAQ7Z591 1439 aa21■□□□□ 0.95
SNHG4-201ENST00000448190 FANCAO15360 1455 aa21■□□□□ 0.95
SNHG4-201ENST00000448190 PHLDB1Q86UU1 1377 aa20.97■□□□□ 0.95
SNHG4-201ENST00000448190 NEO1Q92859 1461 aa20.96■□□□□ 0.95
SNHG4-201ENST00000448190 CFDP1Q9UEE9 299 aaPredicted RBP20.95■□□□□ 0.94
SNHG4-201ENST00000448190 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
SNHG4-201ENST00000448190 SCAPERQ9BY12 1400 aa20.94■□□□□ 0.94
SNHG4-201ENST00000448190 ARAP3Q8WWN8 1544 aa20.94■□□□□ 0.94
SNHG4-201ENST00000448190 ARHGAP5Q13017 1502 aa20.92■□□□□ 0.94
SNHG4-201ENST00000448190 PPARGC1BQ86YN6 1023 aaKnown RBP20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms