RNA–Protein interactions for RNA: ENST00000447271.1

PTPN3-205, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 2

Gene PTPN3, Length 587 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-205ENST00000447271 ZNF608Q9ULD9 1512 aaPredicted RBP11.31□□□□□ -0.6
PTPN3-205ENST00000447271 SMARCA4P51532 1647 aa11.29□□□□□ -0.6
PTPN3-205ENST00000447271 CERKQ8TCT0 537 aa11.29□□□□□ -0.6
PTPN3-205ENST00000447271 BAZ1BQ9UIG0 1483 aaKnown RBP11.26□□□□□ -0.61
PTPN3-205ENST00000447271 CADPSQ9ULU8 1353 aa11.26□□□□□ -0.61
PTPN3-205ENST00000447271 POLA2Q14181 598 aa11.25□□□□□ -0.61
PTPN3-205ENST00000447271 GAPVD1Q14C86 1478 aa11.25□□□□□ -0.61
PTPN3-205ENST00000447271 CLASP1Q7Z460 1538 aa11.19□□□□□ -0.62
PTPN3-205ENST00000447271 FAM69CQ0P6D2 419 aa11.18□□□□□ -0.62
PTPN3-205ENST00000447271 EIF4G3O43432 1585 aaKnown RBP11.18□□□□□ -0.62
PTPN3-205ENST00000447271 URB2Q14146 1524 aaKnown RBP11.18□□□□□ -0.62
PTPN3-205ENST00000447271 FANCD2Q9BXW9 1451 aa11.17□□□□□ -0.62
PTPN3-205ENST00000447271 DCAF1Q9Y4B6 1507 aa11.15□□□□□ -0.62
PTPN3-205ENST00000447271 TSPOAP1O95153 1857 aa11.15□□□□□ -0.62
PTPN3-205ENST00000447271 IFT140Q96RY7 1462 aa11.13□□□□□ -0.63
PTPN3-205ENST00000447271 ABCC10Q5T3U5 1492 aa11.07□□□□□ -0.64
PTPN3-205ENST00000447271 SYNJ1O43426 1573 aa11.07□□□□□ -0.64
PTPN3-205ENST00000447271 TOP2BQ02880 1626 aa11.06□□□□□ -0.64
PTPN3-205ENST00000447271 ATXN8OSP0DMR3 200 aa11.03□□□□□ -0.64
PTPN3-205ENST00000447271 DIP2BQ9P265 1576 aa11.02□□□□□ -0.65
PTPN3-205ENST00000447271 AQRO60306 1485 aaKnown RBP eCLIP11.01□□□□□ -0.65
PTPN3-205ENST00000447271 CSRNP3Q8WYN3 585 aa11.01□□□□□ -0.65
PTPN3-205ENST00000447271 ZCCHC6Q5VYS8 1495 aaKnown RBP10.98□□□□□ -0.65
PTPN3-205ENST00000447271 PCF11O94913 1555 aaKnown RBP10.96□□□□□ -0.65
PTPN3-205ENST00000447271 IFFO2Q5TF58 517 aa10.96□□□□□ -0.65
PTPN3-205ENST00000447271 RBM42Q9BTD8 480 aaKnown RBP10.94□□□□□ -0.66
PTPN3-205ENST00000447271 POTEHQ6S545 545 aa10.93□□□□□ -0.66
PTPN3-205ENST00000447271 CHMP7Q8WUX9 453 aaPredicted RBP10.93□□□□□ -0.66
PTPN3-205ENST00000447271 MED1Q15648 1581 aaPredicted RBP10.91□□□□□ -0.66
PTPN3-205ENST00000447271 EHMT2Q96KQ7 1210 aa10.91□□□□□ -0.66
PTPN3-205ENST00000447271 ZBTB12Q9Y330 459 aaPredicted RBP10.9□□□□□ -0.66
PTPN3-205ENST00000447271 PEG3Q9GZU2 1588 aa10.9□□□□□ -0.67
PTPN3-205ENST00000447271 SNAPC4Q5SXM2 1469 aa10.89□□□□□ -0.67
PTPN3-205ENST00000447271 MKRN4PQ13434 485 aaPredicted RBP10.87□□□□□ -0.67
PTPN3-205ENST00000447271 HSPA2P54652 639 aa10.86□□□□□ -0.67
PTPN3-205ENST00000447271 MAPKBP1O60336 1514 aa10.85□□□□□ -0.67
PTPN3-205ENST00000447271 NPM1P06748 294 aaKnown RBP eCLIP10.84□□□□□ -0.67
PTPN3-205ENST00000447271 PTPRMP28827 1452 aa10.82□□□□□ -0.68
PTPN3-205ENST00000447271 TARBP1Q13395 1621 aaKnown RBP10.8□□□□□ -0.68
PTPN3-205ENST00000447271 COL17A1Q9UMD9 1497 aaPredicted RBP10.8□□□□□ -0.68
PTPN3-205ENST00000447271 SRCAPQ6ZRS2 3230 aa10.79□□□□□ -0.68
PTPN3-205ENST00000447271 CFTRP13569 1480 aa10.79□□□□□ -0.68
PTPN3-205ENST00000447271 AKT1S1Q96B36 256 aa10.78□□□□□ -0.68
PTPN3-205ENST00000447271 TOPBP1Q92547 1522 aa10.78□□□□□ -0.68
PTPN3-205ENST00000447271 PPRC1Q5VV67 1664 aaKnown RBP10.77□□□□□ -0.69
PTPN3-205ENST00000447271 CHRDL2Q6WN34 429 aa10.77□□□□□ -0.69
PTPN3-205ENST00000447271 CEP170Q5SW79 1584 aa10.74□□□□□ -0.69
PTPN3-205ENST00000447271 REM2Q8IYK8 340 aaPredicted RBP10.74□□□□□ -0.69
PTPN3-205ENST00000447271 KIF21BO75037 1637 aa10.71□□□□□ -0.69
PTPN3-205ENST00000447271 MROH2BQ7Z745 1585 aa10.71□□□□□ -0.69
PTPN3-205ENST00000447271 MAGI1Q96QZ7 1491 aaPredicted RBP10.71□□□□□ -0.69
PTPN3-205ENST00000447271 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
PTPN3-205ENST00000447271 ADAMTSL3P82987 1691 aa10.67□□□□□ -0.7
PTPN3-205ENST00000447271 PITPNM1O00562 1244 aa10.67□□□□□ -0.7
PTPN3-205ENST00000447271 IQSEC2Q5JU85 1478 aa10.64□□□□□ -0.71
PTPN3-205ENST00000447271 SPDYE2BA6NHP3 402 aa10.64□□□□□ -0.71
PTPN3-205ENST00000447271 SPDYE6P0CI01 402 aa10.64□□□□□ -0.71
PTPN3-205ENST00000447271 SPDYE2Q495Y8 402 aa10.64□□□□□ -0.71
PTPN3-205ENST00000447271 PRDM2Q13029 1718 aa10.64□□□□□ -0.71
PTPN3-205ENST00000447271 UBAP1LF5GYI3 381 aa10.63□□□□□ -0.71
PTPN3-205ENST00000447271 LTBP4Q8N2S1 1624 aa10.62□□□□□ -0.71
PTPN3-205ENST00000447271 ADCY10Q96PN6 1610 aa10.62□□□□□ -0.71
PTPN3-205ENST00000447271 ABCC8Q09428 1581 aa10.61□□□□□ -0.71
PTPN3-205ENST00000447271 HSPA1LP34931 641 aa10.6□□□□□ -0.71
PTPN3-205ENST00000447271 SSUH2Q9Y2M2 353 aa10.6□□□□□ -0.71
PTPN3-205ENST00000447271 SHROOM2Q13796 1616 aa10.59□□□□□ -0.71
PTPN3-205ENST00000447271 PIP4P2Q8N4L2 257 aa10.59□□□□□ -0.71
PTPN3-205ENST00000447271 DNMBPQ6XZF7 1577 aa10.59□□□□□ -0.71
PTPN3-205ENST00000447271 RAD54L2Q9Y4B4 1467 aa10.58□□□□□ -0.72
PTPN3-205ENST00000447271 MADDQ8WXG6 1647 aa10.57□□□□□ -0.72
PTPN3-205ENST00000447271 GRIN2BQ13224 1484 aa10.56□□□□□ -0.72
PTPN3-205ENST00000447271 SETD1AO15047 1707 aaKnown RBP10.55□□□□□ -0.72
PTPN3-205ENST00000447271 POLA1P09884 1462 aaPredicted RBP10.55□□□□□ -0.72
PTPN3-205ENST00000447271 STRCQ7RTU9 1775 aa10.55□□□□□ -0.72
PTPN3-205ENST00000447271 PTPRTO14522 1441 aa10.55□□□□□ -0.72
PTPN3-205ENST00000447271 GLI2P10070 1586 aa10.54□□□□□ -0.72
PTPN3-205ENST00000447271 ZNF692Q9BU19 519 aaPredicted RBP10.54□□□□□ -0.72
PTPN3-205ENST00000447271 TEX14Q8IWB6 1497 aa10.54□□□□□ -0.72
PTPN3-205ENST00000447271 YEATS2Q9ULM3 1422 aa10.53□□□□□ -0.72
PTPN3-205ENST00000447271 RGS17Q9UGC6 210 aaPredicted RBP10.53□□□□□ -0.72
PTPN3-205ENST00000447271 WDR97A6NE52 1622 aa10.53□□□□□ -0.72
PTPN3-205ENST00000447271 RIMS1Q86UR5 1692 aaKnown RBP10.53□□□□□ -0.72
PTPN3-205ENST00000447271 FXR2P51116 673 aaKnown RBP eCLIP10.52□□□□□ -0.73
PTPN3-205ENST00000447271 PRG4Q92954 1404 aaPredicted RBP10.51□□□□□ -0.73
PTPN3-205ENST00000447271 BCORL1Q5H9F3 1711 aa10.5□□□□□ -0.73
PTPN3-205ENST00000447271 CFAP43Q8NDM7 1665 aa10.49□□□□□ -0.73
PTPN3-205ENST00000447271 SOGA1O94964 1423 aa10.49□□□□□ -0.73
PTPN3-205ENST00000447271 PBRM1Q86U86 1689 aa10.48□□□□□ -0.73
PTPN3-205ENST00000447271 MAP3K4Q9Y6R4 1608 aa10.47□□□□□ -0.73
PTPN3-205ENST00000447271 UPF1Q92900 1129 aaKnown RBP eCLIP10.46□□□□□ -0.73
PTPN3-205ENST00000447271 PIP4K2BP78356 416 aa10.44□□□□□ -0.74
PTPN3-205ENST00000447271 GRIN2AQ12879 1464 aa10.43□□□□□ -0.74
PTPN3-205ENST00000447271 NUP160Q12769 1436 aa10.43□□□□□ -0.74
PTPN3-205ENST00000447271 POTEAQ6S8J7 498 aa10.43□□□□□ -0.74
PTPN3-205ENST00000447271 CLEC11AQ9Y240 323 aa10.42□□□□□ -0.74
PTPN3-205ENST00000447271 ASXL2Q76L83 1435 aa10.41□□□□□ -0.74
PTPN3-205ENST00000447271 ARID4BQ4LE39 1312 aaPredicted RBP10.41□□□□□ -0.74
PTPN3-205ENST00000447271 SPDYE1Q8NFV5 336 aaPredicted RBP10.41□□□□□ -0.74
PTPN3-205ENST00000447271 PLB1Q6P1J6 1458 aa10.41□□□□□ -0.74
PTPN3-205ENST00000447271 KIAA0586Q9BVV6 1533 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms