RNA–Protein interactions for RNA: ENST00000445593.6

LAPTM4B-201, Transcript of lysosomal protein transmembrane 4 beta, humanhuman

TSL 1 (best) BASIC

Gene LAPTM4B, Length 3,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4B-201ENST00000445593 ARID3CA6NKF2 412 aa24.99■■□□□ 1.59
LAPTM4B-201ENST00000445593 CCNB3Q8WWL7 1395 aa24.99■■□□□ 1.59
LAPTM4B-201ENST00000445593 PCF11O94913 1555 aaKnown RBP24.95■■□□□ 1.58
LAPTM4B-201ENST00000445593 FHAD1B1AJZ9 1412 aa24.94■■□□□ 1.58
LAPTM4B-201ENST00000445593 CUL7Q14999 1698 aa24.94■■□□□ 1.58
LAPTM4B-201ENST00000445593 TIAM1Q13009 1591 aa24.93■■□□□ 1.58
LAPTM4B-201ENST00000445593 WDR97A6NE52 1622 aa24.92■■□□□ 1.58
LAPTM4B-201ENST00000445593 DIEXFQ68CQ4 756 aaKnown RBP24.92■■□□□ 1.58
LAPTM4B-201ENST00000445593 ABCA5Q8WWZ7 1642 aa24.91■■□□□ 1.58
LAPTM4B-201ENST00000445593 PHLDB1Q86UU1 1377 aa24.91■■□□□ 1.58
LAPTM4B-201ENST00000445593 RRBP1Q9P2E9 1410 aaKnown RBP24.89■■□□□ 1.58
LAPTM4B-201ENST00000445593 LRRC9Q6ZRR7 1453 aa24.89■■□□□ 1.57
LAPTM4B-201ENST00000445593 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.57
LAPTM4B-201ENST00000445593 ERCC6Q03468 1493 aa24.87■■□□□ 1.57
LAPTM4B-201ENST00000445593 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
LAPTM4B-201ENST00000445593 TARBP1Q13395 1621 aaKnown RBP24.85■■□□□ 1.57
LAPTM4B-201ENST00000445593 FBLN2P98095 1184 aa24.83■■□□□ 1.57
LAPTM4B-201ENST00000445593 CTTNBP2Q8WZ74 1663 aa24.83■■□□□ 1.57
LAPTM4B-201ENST00000445593 DHX57Q6P158 1386 aaKnown RBP24.82■■□□□ 1.56
LAPTM4B-201ENST00000445593 ZNF316A6NFI3 1004 aaPredicted RBP24.8■■□□□ 1.56
LAPTM4B-201ENST00000445593 EFCAB5A4FU69 1503 aa24.77■■□□□ 1.56
LAPTM4B-201ENST00000445593 MTUS2Q5JR59 1369 aa24.77■■□□□ 1.56
LAPTM4B-201ENST00000445593 CASKIN1Q8WXD9 1431 aa24.76■■□□□ 1.55
LAPTM4B-201ENST00000445593 FMN1Q68DA7 1419 aa24.76■■□□□ 1.55
LAPTM4B-201ENST00000445593 FYCO1Q9BQS8 1478 aa24.73■■□□□ 1.55
LAPTM4B-201ENST00000445593 RAB3GAP2Q9H2M9 1393 aa24.73■■□□□ 1.55
LAPTM4B-201ENST00000445593 GRIN2BQ13224 1484 aa24.69■■□□□ 1.54
LAPTM4B-201ENST00000445593 PBRM1Q86U86 1689 aa24.69■■□□□ 1.54
LAPTM4B-201ENST00000445593 MAP3K1Q13233 1512 aa24.68■■□□□ 1.54
LAPTM4B-201ENST00000445593 SNAPC4Q5SXM2 1469 aa24.66■■□□□ 1.54
LAPTM4B-201ENST00000445593 CFAP43Q8NDM7 1665 aa24.66■■□□□ 1.54
LAPTM4B-201ENST00000445593 IFT140Q96RY7 1462 aa24.64■■□□□ 1.53
LAPTM4B-201ENST00000445593 NEUROD1Q13562 356 aa24.63■■□□□ 1.53
LAPTM4B-201ENST00000445593 CHMP7Q8WUX9 453 aaPredicted RBP24.63■■□□□ 1.53
LAPTM4B-201ENST00000445593 ADAMTS12P58397 1594 aa24.61■■□□□ 1.53
LAPTM4B-201ENST00000445593 SAMD9Q5K651 1589 aa24.6■■□□□ 1.53
LAPTM4B-201ENST00000445593 WDR62O43379 1518 aa24.6■■□□□ 1.53
LAPTM4B-201ENST00000445593 SETD5Q9C0A6 1442 aa24.58■■□□□ 1.53
LAPTM4B-201ENST00000445593 YTHDC1Q96MU7 727 aaKnown RBP24.57■■□□□ 1.52
LAPTM4B-201ENST00000445593 SIN3AQ96ST3 1273 aa24.57■■□□□ 1.52
LAPTM4B-201ENST00000445593 IQGAP2Q13576 1575 aa24.57■■□□□ 1.52
LAPTM4B-201ENST00000445593 MYT1Q01538 1121 aa24.56■■□□□ 1.52
LAPTM4B-201ENST00000445593 CHIC2Q9UKJ5 165 aa24.56■■□□□ 1.52
LAPTM4B-201ENST00000445593 SCAF1Q9H7N4 1312 aaKnown RBP24.54■■□□□ 1.52
LAPTM4B-201ENST00000445593 FGD6Q6ZV73 1430 aa24.53■■□□□ 1.52
LAPTM4B-201ENST00000445593 EIF4G3O43432 1585 aaKnown RBP24.51■■□□□ 1.51
LAPTM4B-201ENST00000445593 LRRIQ1Q96JM4 1722 aa24.51■■□□□ 1.51
LAPTM4B-201ENST00000445593 NCOA2Q15596 1464 aa24.51■■□□□ 1.51
LAPTM4B-201ENST00000445593 CDK13Q14004 1512 aaKnown RBP24.5■■□□□ 1.51
LAPTM4B-201ENST00000445593 CLSPNQ9HAW4 1339 aa24.5■■□□□ 1.51
LAPTM4B-201ENST00000445593 MIER1Q8N108 512 aa24.48■■□□□ 1.51
LAPTM4B-201ENST00000445593 RRP7BPQ9NSQ0 103 aa24.46■■□□□ 1.51
LAPTM4B-201ENST00000445593 MAGI3Q5TCQ9 1506 aa24.45■■□□□ 1.5
LAPTM4B-201ENST00000445593 GRIN2AQ12879 1464 aa24.44■■□□□ 1.5
LAPTM4B-201ENST00000445593 PTPRKQ15262 1439 aa24.43■■□□□ 1.5
LAPTM4B-201ENST00000445593 THOC2Q8NI27 1593 aaKnown RBP24.41■■□□□ 1.5
LAPTM4B-201ENST00000445593 MYOM3Q5VTT5 1437 aa24.41■■□□□ 1.5
LAPTM4B-201ENST00000445593 MAPKBP1O60336 1514 aa24.4■■□□□ 1.5
LAPTM4B-201ENST00000445593 EPRSP07814 1512 aaKnown RBP24.4■■□□□ 1.5
LAPTM4B-201ENST00000445593 KIAA0586Q9BVV6 1533 aa24.39■■□□□ 1.49
LAPTM4B-201ENST00000445593 EHBP1L1Q8N3D4 1523 aa24.35■■□□□ 1.49
LAPTM4B-201ENST00000445593 DISP1Q96F81 1524 aa24.34■■□□□ 1.49
LAPTM4B-201ENST00000445593 HECW1Q76N89 1606 aa24.34■■□□□ 1.49
LAPTM4B-201ENST00000445593 SUPT6HQ7KZ85 1726 aaKnown RBP24.34■■□□□ 1.49
LAPTM4B-201ENST00000445593 JPH4Q96JJ6 628 aa24.34■■□□□ 1.49
LAPTM4B-201ENST00000445593 HIRIP3Q9BW71 556 aaPredicted RBP24.34■■□□□ 1.49
LAPTM4B-201ENST00000445593 CCDC18Q5T9S5 1454 aa24.32■■□□□ 1.48
LAPTM4B-201ENST00000445593 TRIM52Q96A61 297 aa24.32■■□□□ 1.48
LAPTM4B-201ENST00000445593 UGGT2Q9NYU1 1516 aa24.31■■□□□ 1.48
LAPTM4B-201ENST00000445593 ZNF644Q9H582 1327 aaPredicted RBP24.31■■□□□ 1.48
LAPTM4B-201ENST00000445593 ZNF777Q9ULD5 760 aaPredicted RBP24.3■■□□□ 1.48
LAPTM4B-201ENST00000445593 SYNJ2O15056 1496 aa24.29■■□□□ 1.48
LAPTM4B-201ENST00000445593 KIAA0556O60303 1618 aa24.29■■□□□ 1.48
LAPTM4B-201ENST00000445593 MAGI1Q96QZ7 1491 aaPredicted RBP24.28■■□□□ 1.48
LAPTM4B-201ENST00000445593 CEP170Q5SW79 1584 aa24.27■■□□□ 1.48
LAPTM4B-201ENST00000445593 PLB1Q6P1J6 1458 aa24.27■■□□□ 1.48
LAPTM4B-201ENST00000445593 ACIN1Q9UKV3 1341 aaKnown RBP24.26■■□□□ 1.47
LAPTM4B-201ENST00000445593 PTPN23Q9H3S7 1636 aa24.25■■□□□ 1.47
LAPTM4B-201ENST00000445593 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.25■■□□□ 1.471e-8■■□□□ 13.4
LAPTM4B-201ENST00000445593 NUP153P49790 1475 aaKnown RBP24.23■■□□□ 1.47
LAPTM4B-201ENST00000445593 CENPBP07199 599 aaPredicted RBP24.23■■□□□ 1.47
LAPTM4B-201ENST00000445593 CDK11AQ9UQ88 783 aaPredicted RBP24.21■■□□□ 1.47
LAPTM4B-201ENST00000445593 NAIPQ13075 1403 aa24.21■■□□□ 1.47
LAPTM4B-201ENST00000445593 PRG4Q92954 1404 aaPredicted RBP24.21■■□□□ 1.47
LAPTM4B-201ENST00000445593 HFM1A2PYH4 1435 aa24.2■■□□□ 1.46
LAPTM4B-201ENST00000445593 FOXD1Q16676 465 aa24.19■■□□□ 1.46
LAPTM4B-201ENST00000445593 CARMIL2Q6F5E8 1435 aa24.15■■□□□ 1.46
LAPTM4B-201ENST00000445593 ARHGEF11O15085 1522 aa24.14■■□□□ 1.45
LAPTM4B-201ENST00000445593 RAPGEF6Q8TEU7 1601 aa24.14■■□□□ 1.45
LAPTM4B-201ENST00000445593 CFDP1Q9UEE9 299 aaPredicted RBP24.13■■□□□ 1.45
LAPTM4B-201ENST00000445593 TONSLQ96HA7 1378 aa24.13■■□□□ 1.45
LAPTM4B-201ENST00000445593 NUP160Q12769 1436 aa24.1■■□□□ 1.45
LAPTM4B-201ENST00000445593 UACAQ9BZF9 1416 aa24.1■■□□□ 1.45
LAPTM4B-201ENST00000445593 GTF3C3Q9Y5Q9 886 aa24.09■■□□□ 1.45
LAPTM4B-201ENST00000445593 DDX10Q13206 875 aaKnown RBP24.08■■□□□ 1.45
LAPTM4B-201ENST00000445593 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
LAPTM4B-201ENST00000445593 PLEKHD1A6NEE1 506 aa24.05■■□□□ 1.44
LAPTM4B-201ENST00000445593 KDM6BO15054 1643 aa24.05■■□□□ 1.44
LAPTM4B-201ENST00000445593 TCOF1Q13428 1488 aaKnown RBP24.03■■□□□ 1.44
LAPTM4B-201ENST00000445593 MIA2Q96PC5 1412 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms