RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 NUP160Q12769 1436 aa33.44■■■□□ 2.94
CHD3-204ENST00000439235 CTTNBP2Q8WZ74 1663 aa33.43■■■□□ 2.94
CHD3-204ENST00000439235 CEP170Q5SW79 1584 aa33.4■■■□□ 2.94
CHD3-204ENST00000439235 KIAA0586Q9BVV6 1533 aa33.35■■■□□ 2.93
CHD3-204ENST00000439235 IQGAP2Q13576 1575 aa33.31■■■□□ 2.92
CHD3-204ENST00000439235 CEP162Q5TB80 1403 aa33.27■■■□□ 2.92
CHD3-204ENST00000439235 CLIP1P30622 1438 aa33.19■■■□□ 2.9
CHD3-204ENST00000439235 CLASP1Q7Z460 1538 aa33.19■■■□□ 2.9
CHD3-204ENST00000439235 OSCARQ8IYS5 282 aa33.17■■■□□ 2.9
CHD3-204ENST00000439235 UGGT2Q9NYU1 1516 aa33.15■■■□□ 2.9
CHD3-204ENST00000439235 RANGAP1P46060 587 aaPredicted RBP33.14■■■□□ 2.9
CHD3-204ENST00000439235 EFCAB5A4FU69 1503 aa33.13■■■□□ 2.89
CHD3-204ENST00000439235 JPH4Q96JJ6 628 aa33.07■■■□□ 2.88
CHD3-204ENST00000439235 SAMD9Q5K651 1589 aa33.06■■■□□ 2.88
CHD3-204ENST00000439235 SHROOM2Q13796 1616 aa33.06■■■□□ 2.88
CHD3-204ENST00000439235 ARHGAP35Q9NRY4 1499 aa33.05■■■□□ 2.88
CHD3-204ENST00000439235 CARMIL2Q6F5E8 1435 aa32.99■■■□□ 2.87
CHD3-204ENST00000439235 KIAA0556O60303 1618 aa32.99■■■□□ 2.87
CHD3-204ENST00000439235 DISP1Q96F81 1524 aa32.97■■■□□ 2.87
CHD3-204ENST00000439235 PRG4Q92954 1404 aaPredicted RBP32.95■■■□□ 2.87
CHD3-204ENST00000439235 ARAP1Q96P48 1450 aa32.94■■■□□ 2.86
CHD3-204ENST00000439235 FHOD3Q2V2M9 1422 aa32.91■■■□□ 2.86
CHD3-204ENST00000439235 P3H3Q8IVL6 736 aa32.89■■■□□ 2.86
CHD3-204ENST00000439235 VPS8Q8N3P4 1428 aa32.82■■■□□ 2.84
CHD3-204ENST00000439235 FMN1Q68DA7 1419 aa32.8■■■□□ 2.84
CHD3-204ENST00000439235 ERCC6L2Q5T890 1561 aa32.78■■■□□ 2.84
CHD3-204ENST00000439235 PTPRGP23470 1445 aa32.68■■■□□ 2.82
CHD3-204ENST00000439235 ARHGEF11O15085 1522 aa32.64■■■□□ 2.82
CHD3-204ENST00000439235 PCF11O94913 1555 aaKnown RBP32.64■■■□□ 2.82
CHD3-204ENST00000439235 TTBK1Q5TCY1 1321 aaPredicted RBP32.63■■■□□ 2.81
CHD3-204ENST00000439235 FYCO1Q9BQS8 1478 aa32.62■■■□□ 2.81
CHD3-204ENST00000439235 CASKIN1Q8WXD9 1431 aa32.62■■■□□ 2.81
CHD3-204ENST00000439235 HECW1Q76N89 1606 aa32.56■■■□□ 2.8
CHD3-204ENST00000439235 RAPGEF6Q8TEU7 1601 aa32.56■■■□□ 2.8
CHD3-204ENST00000439235 ABCA8O94911 1581 aa32.54■■■□□ 2.8
CHD3-204ENST00000439235 PLB1Q6P1J6 1458 aa32.54■■■□□ 2.8
CHD3-204ENST00000439235 RIMBP3CA6NJZ7 1639 aa32.53■■■□□ 2.8
CHD3-204ENST00000439235 RIMBP3BA6NNM3 1639 aa32.53■■■□□ 2.8
CHD3-204ENST00000439235 RIMBP3Q9UFD9 1639 aa32.53■■■□□ 2.8
CHD3-204ENST00000439235 UACAQ9BZF9 1416 aa32.51■■■□□ 2.79
CHD3-204ENST00000439235 ATP1B4Q9UN42 357 aaPredicted RBP32.48■■■□□ 2.79
CHD3-204ENST00000439235 APLP2Q06481 763 aa32.45■■■□□ 2.79
CHD3-204ENST00000439235 ABCC2Q92887 1545 aa32.45■■■□□ 2.78
CHD3-204ENST00000439235 NUP153P49790 1475 aaKnown RBP32.44■■■□□ 2.78
CHD3-204ENST00000439235 UHRF1BP1LA0JNW5 1464 aa32.43■■■□□ 2.78
CHD3-204ENST00000439235 CCDC18Q5T9S5 1454 aa32.43■■■□□ 2.78
CHD3-204ENST00000439235 MAP3K1Q13233 1512 aa32.41■■■□□ 2.78
CHD3-204ENST00000439235 EPRSP07814 1512 aaKnown RBP32.38■■■□□ 2.77
CHD3-204ENST00000439235 CFAP43Q8NDM7 1665 aa32.37■■■□□ 2.77
CHD3-204ENST00000439235 TIAM1Q13009 1591 aa32.36■■■□□ 2.77
CHD3-204ENST00000439235 LRRIQ1Q96JM4 1722 aa32.33■■■□□ 2.77
CHD3-204ENST00000439235 ADCY10Q96PN6 1610 aa32.32■■■□□ 2.76
CHD3-204ENST00000439235 CDK13Q14004 1512 aaKnown RBP32.31■■■□□ 2.76
CHD3-204ENST00000439235 ARID3CA6NKF2 412 aa32.26■■■□□ 2.75
CHD3-204ENST00000439235 CYB5RLQ6IPT4 315 aa32.26■■■□□ 2.75
CHD3-204ENST00000439235 ATP10BO94823 1461 aa32.26■■■□□ 2.75
CHD3-204ENST00000439235 KDM5BQ9UGL1 1544 aa32.26■■■□□ 2.75
CHD3-204ENST00000439235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.23■■■□□ 2.75
CHD3-204ENST00000439235 HNRNPUL2Q1KMD3 747 aaKnown RBP32.23■■■□□ 2.75
CHD3-204ENST00000439235 CDK11AQ9UQ88 783 aaPredicted RBP32.21■■■□□ 2.75
CHD3-204ENST00000439235 LRRC9Q6ZRR7 1453 aa32.2■■■□□ 2.75
CHD3-204ENST00000439235 ZCCHC11Q5TAX3 1644 aaKnown RBP32.19■■■□□ 2.74
CHD3-204ENST00000439235 MTUS2Q5JR59 1369 aa32.18■■■□□ 2.74
CHD3-204ENST00000439235 EHBP1L1Q8N3D4 1523 aa32.17■■■□□ 2.74
CHD3-204ENST00000439235 TRHP20396 242 aaPredicted RBP32.16■■■□□ 2.74
CHD3-204ENST00000439235 NPM1P06748 294 aaKnown RBP eCLIP32.14■■■□□ 2.74
CHD3-204ENST00000439235 KANK4Q5T7N3 995 aaPredicted RBP32.14■■■□□ 2.74
CHD3-204ENST00000439235 MAGI3Q5TCQ9 1506 aa32.11■■■□□ 2.73
CHD3-204ENST00000439235 TROQ12816 1431 aaPredicted RBP32.09■■■□□ 2.73
CHD3-204ENST00000439235 PLEKHD1A6NEE1 506 aa32.09■■■□□ 2.73
CHD3-204ENST00000439235 PPARGC1BQ86YN6 1023 aaKnown RBP32.08■■■□□ 2.73
CHD3-204ENST00000439235 SUPT6HQ7KZ85 1726 aaKnown RBP32■■■□□ 2.71
CHD3-204ENST00000439235 WDR7Q9Y4E6 1490 aa31.98■■■□□ 2.71
CHD3-204ENST00000439235 ASXL2Q76L83 1435 aa31.98■■■□□ 2.71
CHD3-204ENST00000439235 KIF14Q15058 1648 aa31.97■■■□□ 2.71
CHD3-204ENST00000439235 MAPKBP1O60336 1514 aa31.96■■■□□ 2.71
CHD3-204ENST00000439235 NCOA2Q15596 1464 aa31.94■■■□□ 2.7
CHD3-204ENST00000439235 PHLDB1Q86UU1 1377 aa31.82■■■□□ 2.69
CHD3-204ENST00000439235 ABCC10Q5T3U5 1492 aa31.82■■■□□ 2.68
CHD3-204ENST00000439235 CCNB3Q8WWL7 1395 aa31.81■■■□□ 2.68
CHD3-204ENST00000439235 KCNH8Q96L42 1107 aa31.81■■■□□ 2.68
CHD3-204ENST00000439235 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.8■■■□□ 2.68
CHD3-204ENST00000439235 MYOM3Q5VTT5 1437 aa31.79■■■□□ 2.68
CHD3-204ENST00000439235 AEBP2Q6ZN18 517 aaPredicted RBP31.78■■■□□ 2.68
CHD3-204ENST00000439235 TTC37Q6PGP7 1564 aa31.76■■■□□ 2.67
CHD3-204ENST00000439235 ITSN2Q9NZM3 1697 aa31.76■■■□□ 2.67
CHD3-204ENST00000439235 ABCA9Q8IUA7 1624 aa31.73■■■□□ 2.67
CHD3-204ENST00000439235 GPATCH8Q9UKJ3 1502 aaKnown RBP31.71■■■□□ 2.67
CHD3-204ENST00000439235 FGD6Q6ZV73 1430 aa31.7■■■□□ 2.67
CHD3-204ENST00000439235 MIA2Q96PC5 1412 aa31.7■■■□□ 2.67
CHD3-204ENST00000439235 RRBP1Q9P2E9 1410 aaKnown RBP31.69■■■□□ 2.66
CHD3-204ENST00000439235 GLI2P10070 1586 aa31.68■■■□□ 2.66
CHD3-204ENST00000439235 PREX2Q70Z35 1606 aa31.67■■■□□ 2.66
CHD3-204ENST00000439235 CDC42BPAQ5VT25 1732 aa31.66■■■□□ 2.66
CHD3-204ENST00000439235 MYO5CQ9NQX4 1742 aa31.66■■■□□ 2.66
CHD3-204ENST00000439235 DIP2BQ9P265 1576 aa31.66■■■□□ 2.66
CHD3-204ENST00000439235 TRIM26Q12899 539 aaPredicted RBP31.65■■■□□ 2.66
CHD3-204ENST00000439235 PLCH2O75038 1416 aa31.62■■■□□ 2.65
CHD3-204ENST00000439235 ARAP3Q8WWN8 1544 aa31.62■■■□□ 2.65
CHD3-204ENST00000439235 CFDP1Q9UEE9 299 aaPredicted RBP31.62■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms