RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
COL6A3-207ENST00000433762 EFCAB5A4FU69 1503 aa20.14■□□□□ 0.82
COL6A3-207ENST00000433762 LRRC9Q6ZRR7 1453 aa20.09■□□□□ 0.81
COL6A3-207ENST00000433762 AQRO60306 1485 aaKnown RBP eCLIP20.09■□□□□ 0.81
COL6A3-207ENST00000433762 CTTNBP2Q8WZ74 1663 aa20.08■□□□□ 0.81
COL6A3-207ENST00000433762 TOPBP1Q92547 1522 aa20.08■□□□□ 0.8
COL6A3-207ENST00000433762 WDR97A6NE52 1622 aa20.07■□□□□ 0.8
COL6A3-207ENST00000433762 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
COL6A3-207ENST00000433762 FYCO1Q9BQS8 1478 aa20.05■□□□□ 0.8
COL6A3-207ENST00000433762 POLA1P09884 1462 aaPredicted RBP20.04■□□□□ 0.8
COL6A3-207ENST00000433762 PCF11O94913 1555 aaKnown RBP20.03■□□□□ 0.8
COL6A3-207ENST00000433762 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.01■□□□□ 0.79
COL6A3-207ENST00000433762 GTF3C3Q9Y5Q9 886 aa20■□□□□ 0.79
COL6A3-207ENST00000433762 KIF21AQ7Z4S6 1674 aa19.98■□□□□ 0.79
COL6A3-207ENST00000433762 CASKIN1Q8WXD9 1431 aa19.98■□□□□ 0.79
COL6A3-207ENST00000433762 MIER1Q8N108 512 aa19.98■□□□□ 0.79
COL6A3-207ENST00000433762 SETD5Q9C0A6 1442 aa19.94■□□□□ 0.78
COL6A3-207ENST00000433762 ABCA5Q8WWZ7 1642 aa19.94■□□□□ 0.78
COL6A3-207ENST00000433762 MAPKBP1O60336 1514 aa19.93■□□□□ 0.78
COL6A3-207ENST00000433762 RAB3GAP2Q9H2M9 1393 aa19.93■□□□□ 0.78
COL6A3-207ENST00000433762 RAD54L2Q9Y4B4 1467 aa19.93■□□□□ 0.78
COL6A3-207ENST00000433762 FMN1Q68DA7 1419 aa19.91■□□□□ 0.78
COL6A3-207ENST00000433762 THOC2Q8NI27 1593 aaKnown RBP19.91■□□□□ 0.78
COL6A3-207ENST00000433762 PHLDB1Q86UU1 1377 aa19.91■□□□□ 0.78
COL6A3-207ENST00000433762 SAMD9Q5K651 1589 aa19.9■□□□□ 0.78
COL6A3-207ENST00000433762 URB2Q14146 1524 aaKnown RBP19.87■□□□□ 0.77
COL6A3-207ENST00000433762 TIMELESSQ9UNS1 1208 aa19.86■□□□□ 0.77
COL6A3-207ENST00000433762 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
COL6A3-207ENST00000433762 SNAPC4Q5SXM2 1469 aa19.85■□□□□ 0.77
COL6A3-207ENST00000433762 FHOD3Q2V2M9 1422 aa19.84■□□□□ 0.77
COL6A3-207ENST00000433762 MRC2Q9UBG0 1479 aa19.81■□□□□ 0.76
COL6A3-207ENST00000433762 GAPVD1Q14C86 1478 aa19.78■□□□□ 0.76
COL6A3-207ENST00000433762 FGD6Q6ZV73 1430 aa19.75■□□□□ 0.75
COL6A3-207ENST00000433762 GRIN2BQ13224 1484 aa19.75■□□□□ 0.75
COL6A3-207ENST00000433762 YTHDC1Q96MU7 727 aaKnown RBP19.73■□□□□ 0.75
COL6A3-207ENST00000433762 TARBP1Q13395 1621 aaKnown RBP19.73■□□□□ 0.75
COL6A3-207ENST00000433762 EHBP1L1Q8N3D4 1523 aa19.73■□□□□ 0.75
COL6A3-207ENST00000433762 LRRIQ1Q96JM4 1722 aa19.73■□□□□ 0.75
COL6A3-207ENST00000433762 SUPT6HQ7KZ85 1726 aaKnown RBP19.72■□□□□ 0.75
COL6A3-207ENST00000433762 WDR62O43379 1518 aa19.7■□□□□ 0.74
COL6A3-207ENST00000433762 ITGAEP38570 1179 aa19.7■□□□□ 0.74
COL6A3-207ENST00000433762 CCDC18Q5T9S5 1454 aa19.69■□□□□ 0.74
COL6A3-207ENST00000433762 FAM50AQ14320 339 aaKnown RBP19.68■□□□□ 0.74
COL6A3-207ENST00000433762 HFM1A2PYH4 1435 aa19.68■□□□□ 0.74
COL6A3-207ENST00000433762 ARHGEF11O15085 1522 aa19.68■□□□□ 0.74
COL6A3-207ENST00000433762 PBRM1Q86U86 1689 aa19.67■□□□□ 0.74
COL6A3-207ENST00000433762 MYOM3Q5VTT5 1437 aa19.66■□□□□ 0.74
COL6A3-207ENST00000433762 MTUS2Q5JR59 1369 aa19.65■□□□□ 0.74
COL6A3-207ENST00000433762 PTPN23Q9H3S7 1636 aa19.65■□□□□ 0.74
COL6A3-207ENST00000433762 P3H3Q8IVL6 736 aa19.65■□□□□ 0.74
COL6A3-207ENST00000433762 HECW1Q76N89 1606 aa19.63■□□□□ 0.73
COL6A3-207ENST00000433762 UGGT2Q9NYU1 1516 aa19.63■□□□□ 0.73
COL6A3-207ENST00000433762 NCOA2Q15596 1464 aa19.63■□□□□ 0.73
COL6A3-207ENST00000433762 UACAQ9BZF9 1416 aa19.63■□□□□ 0.73
COL6A3-207ENST00000433762 TDRD9Q8NDG6 1382 aaKnown RBP19.62■□□□□ 0.73
COL6A3-207ENST00000433762 TCOF1Q13428 1488 aaKnown RBP19.6■□□□□ 0.73
COL6A3-207ENST00000433762 ADAMTS12P58397 1594 aa19.6■□□□□ 0.73
COL6A3-207ENST00000433762 AKNAQ7Z591 1439 aa19.6■□□□□ 0.73
COL6A3-207ENST00000433762 GCC2Q8IWJ2 1684 aa19.59■□□□□ 0.73
COL6A3-207ENST00000433762 IQGAP2Q13576 1575 aa19.58■□□□□ 0.73
COL6A3-207ENST00000433762 ATP1B4Q9UN42 357 aaPredicted RBP19.56■□□□□ 0.72
COL6A3-207ENST00000433762 PPP1R15AO75807 674 aaPredicted RBP19.54■□□□□ 0.72
COL6A3-207ENST00000433762 NAIPQ13075 1403 aa19.54■□□□□ 0.72
COL6A3-207ENST00000433762 IFT140Q96RY7 1462 aa19.54■□□□□ 0.72
COL6A3-207ENST00000433762 PTPRKQ15262 1439 aa19.52■□□□□ 0.72
COL6A3-207ENST00000433762 MIA2Q96PC5 1412 aa19.51■□□□□ 0.71
COL6A3-207ENST00000433762 MAGI3Q5TCQ9 1506 aa19.49■□□□□ 0.71
COL6A3-207ENST00000433762 SIN3AQ96ST3 1273 aa19.49■□□□□ 0.71
COL6A3-207ENST00000433762 EPRSP07814 1512 aaKnown RBP19.48■□□□□ 0.71
COL6A3-207ENST00000433762 TONSLQ96HA7 1378 aa19.46■□□□□ 0.71
COL6A3-207ENST00000433762 ZNF608Q9ULD9 1512 aaPredicted RBP19.44■□□□□ 0.7
COL6A3-207ENST00000433762 CCER2I3L3R5 266 aa19.43■□□□□ 0.7
COL6A3-207ENST00000433762 MYT1Q01538 1121 aa19.42■□□□□ 0.7
COL6A3-207ENST00000433762 KDM5BQ9UGL1 1544 aa19.41■□□□□ 0.7
COL6A3-207ENST00000433762 KIAA0586Q9BVV6 1533 aa19.38■□□□□ 0.69
COL6A3-207ENST00000433762 KIAA0556O60303 1618 aa19.38■□□□□ 0.69
COL6A3-207ENST00000433762 SUPT16HQ9Y5B9 1047 aaKnown RBP19.37■□□□□ 0.69
COL6A3-207ENST00000433762 EIF4G3O43432 1585 aaKnown RBP19.37■□□□□ 0.69
COL6A3-207ENST00000433762 ROCK1Q13464 1354 aa19.35■□□□□ 0.69
COL6A3-207ENST00000433762 DDX10Q13206 875 aaKnown RBP19.34■□□□□ 0.69
COL6A3-207ENST00000433762 DNMT1P26358 1616 aaKnown RBP19.33■□□□□ 0.69
COL6A3-207ENST00000433762 CDK13Q14004 1512 aaKnown RBP19.31■□□□□ 0.68
COL6A3-207ENST00000433762 RAPGEF6Q8TEU7 1601 aa19.31■□□□□ 0.68
COL6A3-207ENST00000433762 DISP1Q96F81 1524 aa19.3■□□□□ 0.68
COL6A3-207ENST00000433762 DENND4BO75064 1496 aaPredicted RBP19.3■□□□□ 0.68
COL6A3-207ENST00000433762 ANP32CO43423 234 aa19.29■□□□□ 0.68
COL6A3-207ENST00000433762 GRIN2AQ12879 1464 aa19.27■□□□□ 0.68
COL6A3-207ENST00000433762 ITSN2Q9NZM3 1697 aa19.26■□□□□ 0.67
COL6A3-207ENST00000433762 ADCY10Q96PN6 1610 aa19.26■□□□□ 0.67
COL6A3-207ENST00000433762 MAGI1Q96QZ7 1491 aaPredicted RBP19.25■□□□□ 0.67
COL6A3-207ENST00000433762 KDM6BO15054 1643 aa19.25■□□□□ 0.67
COL6A3-207ENST00000433762 DAPK1P53355 1430 aa19.25■□□□□ 0.67
COL6A3-207ENST00000433762 NUP153P49790 1475 aaKnown RBP19.24■□□□□ 0.67
COL6A3-207ENST00000433762 ADGBQ8N7X0 1667 aa19.22■□□□□ 0.67
COL6A3-207ENST00000433762 KCNH8Q96L42 1107 aa19.21■□□□□ 0.67
COL6A3-207ENST00000433762 POLR1AO95602 1720 aaPredicted RBP19.21■□□□□ 0.67
COL6A3-207ENST00000433762 CDK11AQ9UQ88 783 aaPredicted RBP19.19■□□□□ 0.66
COL6A3-207ENST00000433762 ABCC5O15440 1437 aa19.18■□□□□ 0.66
COL6A3-207ENST00000433762 RPRD2Q5VT52 1461 aaKnown RBP19.18■□□□□ 0.66
COL6A3-207ENST00000433762 RRP7BPQ9NSQ0 103 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms