RNA–Protein interactions for RNA: ENST00000433271.6

TMEM248-205, Transcript of transmembrane protein 248, humanhuman

TSL 1 (best)

Gene TMEM248, Length 1,610 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-205ENST00000433271 CTTNBP2Q8WZ74 1663 aa42.56■■■■■ 4.4
TMEM248-205ENST00000433271 CEP170Q5SW79 1584 aa42.52■■■■■ 4.4
TMEM248-205ENST00000433271 KIAA0586Q9BVV6 1533 aa42.48■■■■■ 4.39
TMEM248-205ENST00000433271 CEP162Q5TB80 1403 aa42.48■■■■■ 4.39
TMEM248-205ENST00000433271 IQGAP2Q13576 1575 aa42.4■■■■■ 4.38
TMEM248-205ENST00000433271 RANGAP1P46060 587 aaPredicted RBP42.38■■■■■ 4.37
TMEM248-205ENST00000433271 CLIP1P30622 1438 aa42.37■■■■■ 4.37
TMEM248-205ENST00000433271 OSCARQ8IYS5 282 aa42.24■■■■■ 4.35
TMEM248-205ENST00000433271 UGGT2Q9NYU1 1516 aa42.22■■■■■ 4.35
TMEM248-205ENST00000433271 JPH4Q96JJ6 628 aa42.2■■■■■ 4.35
TMEM248-205ENST00000433271 CLASP1Q7Z460 1538 aa42.19■■■■■ 4.34
TMEM248-205ENST00000433271 ARHGAP35Q9NRY4 1499 aa42.19■■■■■ 4.34
TMEM248-205ENST00000433271 EFCAB5A4FU69 1503 aa42.17■■■■■ 4.34
TMEM248-205ENST00000433271 SAMD9Q5K651 1589 aa42.11■■■■■ 4.33
TMEM248-205ENST00000433271 SHROOM2Q13796 1616 aa42.05■■■■■ 4.32
TMEM248-205ENST00000433271 ARAP1Q96P48 1450 aa42.04■■■■■ 4.32
TMEM248-205ENST00000433271 P3H3Q8IVL6 736 aa42.04■■■■■ 4.32
TMEM248-205ENST00000433271 DISP1Q96F81 1524 aa42.04■■■■■ 4.32
TMEM248-205ENST00000433271 CARMIL2Q6F5E8 1435 aa41.99■■■■■ 4.31
TMEM248-205ENST00000433271 PRG4Q92954 1404 aaPredicted RBP41.97■■■■■ 4.31
TMEM248-205ENST00000433271 FHOD3Q2V2M9 1422 aa41.97■■■■■ 4.31
TMEM248-205ENST00000433271 KIAA0556O60303 1618 aa41.97■■■■■ 4.31
TMEM248-205ENST00000433271 VPS8Q8N3P4 1428 aa41.88■■■■■ 4.3
TMEM248-205ENST00000433271 FMN1Q68DA7 1419 aa41.81■■■■■ 4.28
TMEM248-205ENST00000433271 ERCC6L2Q5T890 1561 aa41.76■■■■■ 4.27
TMEM248-205ENST00000433271 PTPRGP23470 1445 aa41.65■■■■■ 4.26
TMEM248-205ENST00000433271 TTBK1Q5TCY1 1321 aaPredicted RBP41.65■■■■■ 4.26
TMEM248-205ENST00000433271 CASKIN1Q8WXD9 1431 aa41.62■■■■■ 4.25
TMEM248-205ENST00000433271 PCF11O94913 1555 aaKnown RBP41.57■■■■■ 4.25
TMEM248-205ENST00000433271 FYCO1Q9BQS8 1478 aa41.57■■■■■ 4.24
TMEM248-205ENST00000433271 ARHGEF11O15085 1522 aa41.48■■■■■ 4.23
TMEM248-205ENST00000433271 ATP1B4Q9UN42 357 aaPredicted RBP41.48■■■■■ 4.23
TMEM248-205ENST00000433271 PLB1Q6P1J6 1458 aa41.48■■■■■ 4.23
TMEM248-205ENST00000433271 RAPGEF6Q8TEU7 1601 aa41.46■■■■■ 4.23
TMEM248-205ENST00000433271 APLP2Q06481 763 aa41.45■■■■■ 4.23
TMEM248-205ENST00000433271 ABCA8O94911 1581 aa41.44■■■■■ 4.22
TMEM248-205ENST00000433271 HECW1Q76N89 1606 aa41.41■■■■■ 4.22
TMEM248-205ENST00000433271 UACAQ9BZF9 1416 aa41.4■■■■■ 4.22
TMEM248-205ENST00000433271 NUP153P49790 1475 aaKnown RBP41.35■■■■■ 4.21
TMEM248-205ENST00000433271 MAP3K1Q13233 1512 aa41.34■■■■■ 4.21
TMEM248-205ENST00000433271 RIMBP3CA6NJZ7 1639 aa41.33■■■■■ 4.21
TMEM248-205ENST00000433271 RIMBP3BA6NNM3 1639 aa41.33■■■■■ 4.21
TMEM248-205ENST00000433271 RIMBP3Q9UFD9 1639 aa41.33■■■■■ 4.21
TMEM248-205ENST00000433271 CCDC18Q5T9S5 1454 aa41.3■■■■■ 4.2
TMEM248-205ENST00000433271 EPRSP07814 1512 aaKnown RBP41.29■■■■■ 4.2
TMEM248-205ENST00000433271 ABCC2Q92887 1545 aa41.27■■■■■ 4.2
TMEM248-205ENST00000433271 LRRIQ1Q96JM4 1722 aa41.27■■■■■ 4.2
TMEM248-205ENST00000433271 TIAM1Q13009 1591 aa41.27■■■■■ 4.2
TMEM248-205ENST00000433271 UHRF1BP1LA0JNW5 1464 aa41.27■■■■■ 4.2
TMEM248-205ENST00000433271 CFAP43Q8NDM7 1665 aa41.22■■■■■ 4.19
TMEM248-205ENST00000433271 ARID3CA6NKF2 412 aa41.21■■■■■ 4.19
TMEM248-205ENST00000433271 CDK13Q14004 1512 aaKnown RBP41.18■■■■■ 4.18
TMEM248-205ENST00000433271 PPARGC1BQ86YN6 1023 aaKnown RBP41.17■■■■■ 4.18
TMEM248-205ENST00000433271 KANK4Q5T7N3 995 aaPredicted RBP41.16■■■■■ 4.18
TMEM248-205ENST00000433271 ATP10BO94823 1461 aa41.15■■■■■ 4.18
TMEM248-205ENST00000433271 ADCY10Q96PN6 1610 aa41.12■■■■■ 4.17
TMEM248-205ENST00000433271 LRRC9Q6ZRR7 1453 aa41.11■■■■■ 4.17
TMEM248-205ENST00000433271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP41.11■■■■■ 4.17
TMEM248-205ENST00000433271 HNRNPUL2Q1KMD3 747 aaKnown RBP41.11■■■■■ 4.17
TMEM248-205ENST00000433271 CYB5RLQ6IPT4 315 aa41.11■■■■■ 4.17
TMEM248-205ENST00000433271 KDM5BQ9UGL1 1544 aa41.07■■■■■ 4.17
TMEM248-205ENST00000433271 CDK11AQ9UQ88 783 aaPredicted RBP41.07■■■■■ 4.16
TMEM248-205ENST00000433271 MTUS2Q5JR59 1369 aa41.03■■■■■ 4.16
TMEM248-205ENST00000433271 MAGI3Q5TCQ9 1506 aa40.97■■■■■ 4.15
TMEM248-205ENST00000433271 ZCCHC11Q5TAX3 1644 aaKnown RBP40.96■■■■■ 4.15
TMEM248-205ENST00000433271 DNAJC5Q9H3Z4 198 aa40.96■■■■■ 4.15
TMEM248-205ENST00000433271 PLEKHD1A6NEE1 506 aa40.95■■■■■ 4.15
TMEM248-205ENST00000433271 EHBP1L1Q8N3D4 1523 aa40.95■■■■■ 4.15
TMEM248-205ENST00000433271 NPM1P06748 294 aaKnown RBP eCLIP40.91■■■■■ 4.14
TMEM248-205ENST00000433271 TROQ12816 1431 aaPredicted RBP40.89■■■■■ 4.14
TMEM248-205ENST00000433271 SUPT6HQ7KZ85 1726 aaKnown RBP40.79■■■■■ 4.12
TMEM248-205ENST00000433271 NCOA2Q15596 1464 aa40.75■■■■■ 4.11
TMEM248-205ENST00000433271 ASXL2Q76L83 1435 aa40.71■■■■■ 4.11
TMEM248-205ENST00000433271 WDR7Q9Y4E6 1490 aa40.69■■■■■ 4.1
TMEM248-205ENST00000433271 KIF14Q15058 1648 aa40.67■■■■■ 4.1
TMEM248-205ENST00000433271 PHLDB1Q86UU1 1377 aa40.66■■■■■ 4.1
TMEM248-205ENST00000433271 KCNH8Q96L42 1107 aa40.63■■■■■ 4.09
TMEM248-205ENST00000433271 MAPKBP1O60336 1514 aa40.63■■■■■ 4.09
TMEM248-205ENST00000433271 TRIM26Q12899 539 aaPredicted RBP40.6■■■■■ 4.09
TMEM248-205ENST00000433271 ABCC10Q5T3U5 1492 aa40.57■■■■■ 4.09
TMEM248-205ENST00000433271 MYOM3Q5VTT5 1437 aa40.55■■■■■ 4.08
TMEM248-205ENST00000433271 CCNB3Q8WWL7 1395 aa40.55■■■■■ 4.08
TMEM248-205ENST00000433271 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP40.51■■■■■ 4.081e-7■■■■■ 38.1
TMEM248-205ENST00000433271 RRBP1Q9P2E9 1410 aaKnown RBP40.49■■■■■ 4.07
TMEM248-205ENST00000433271 GPATCH8Q9UKJ3 1502 aaKnown RBP40.47■■■■■ 4.07
TMEM248-205ENST00000433271 FGD6Q6ZV73 1430 aa40.45■■■■■ 4.07
TMEM248-205ENST00000433271 TTC37Q6PGP7 1564 aa40.44■■■■■ 4.06
TMEM248-205ENST00000433271 MIA2Q96PC5 1412 aa40.42■■■■■ 4.06
TMEM248-205ENST00000433271 ITSN2Q9NZM3 1697 aa40.4■■■■■ 4.06
TMEM248-205ENST00000433271 ABCA9Q8IUA7 1624 aa40.38■■■■■ 4.05
TMEM248-205ENST00000433271 CDC42BPAQ5VT25 1732 aa40.37■■■■■ 4.05
TMEM248-205ENST00000433271 CFDP1Q9UEE9 299 aaPredicted RBP40.37■■■■■ 4.05
TMEM248-205ENST00000433271 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP40.31■■■■■ 4.04
TMEM248-205ENST00000433271 MYO5CQ9NQX4 1742 aa40.31■■■■■ 4.04
TMEM248-205ENST00000433271 PREX2Q70Z35 1606 aa40.3■■■■■ 4.04
TMEM248-205ENST00000433271 PLCH2O75038 1416 aa40.3■■■■■ 4.04
TMEM248-205ENST00000433271 PTPN23Q9H3S7 1636 aa40.29■■■■■ 4.04
TMEM248-205ENST00000433271 PCGF6Q9BYE7 350 aa40.29■■■■■ 4.04
TMEM248-205ENST00000433271 FAM50AQ14320 339 aaKnown RBP40.27■■■■■ 4.04
TMEM248-205ENST00000433271 GLI2P10070 1586 aa40.27■■■■■ 4.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms