RNA–Protein interactions for RNA: ENST00000433224.1

LRRTM1-206, Transcript of leucine rich repeat transmembrane neuronal 1, humanhuman

TSL 1 (best)

Gene LRRTM1, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1-206ENST00000433224 PLPPR3Q6T4P5 718 aa17.51■□□□□ 0.39
LRRTM1-206ENST00000433224 ANP32CO43423 234 aa17.51■□□□□ 0.39
LRRTM1-206ENST00000433224 KDM2AQ9Y2K7 1162 aa17.49■□□□□ 0.39
LRRTM1-206ENST00000433224 CHGAP10645 457 aaKnown RBP17.48■□□□□ 0.39
LRRTM1-206ENST00000433224 EIF4G1Q04637 1599 aaKnown RBP17.47■□□□□ 0.39
LRRTM1-206ENST00000433224 TSPY4P0CV99 314 aa17.45■□□□□ 0.38
LRRTM1-206ENST00000433224 TSPY10P0CW01 314 aa17.45■□□□□ 0.38
LRRTM1-206ENST00000433224 PLEKHD1A6NEE1 506 aa17.44■□□□□ 0.38
LRRTM1-206ENST00000433224 NPM1P06748 294 aaKnown RBP eCLIP17.44■□□□□ 0.38
LRRTM1-206ENST00000433224 CFDP1Q9UEE9 299 aaPredicted RBP17.42■□□□□ 0.38
LRRTM1-206ENST00000433224 VPS8Q8N3P4 1428 aa17.41■□□□□ 0.38
LRRTM1-206ENST00000433224 PDS5BQ9NTI5 1447 aa17.4■□□□□ 0.38
LRRTM1-206ENST00000433224 SENP3-EIF4A1A0A087X0R7 540 aa17.39■□□□□ 0.38
LRRTM1-206ENST00000433224 RGL3Q3MIN7 710 aa17.36■□□□□ 0.37
LRRTM1-206ENST00000433224 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
LRRTM1-206ENST00000433224 CCNB3Q8WWL7 1395 aa17.35■□□□□ 0.37
LRRTM1-206ENST00000433224 FHOD3Q2V2M9 1422 aa17.35■□□□□ 0.37
LRRTM1-206ENST00000433224 FKBP8Q14318 412 aa17.34■□□□□ 0.37
LRRTM1-206ENST00000433224 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.37
LRRTM1-206ENST00000433224 FOXD1Q16676 465 aa17.32■□□□□ 0.36
LRRTM1-206ENST00000433224 SALL2Q9Y467 1007 aaPredicted RBP17.31■□□□□ 0.36
LRRTM1-206ENST00000433224 NESP48681 1621 aa17.3■□□□□ 0.36
LRRTM1-206ENST00000433224 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
LRRTM1-206ENST00000433224 FAM9BQ8IZU0 186 aa17.28■□□□□ 0.36
LRRTM1-206ENST00000433224 IGF1RP08069 1367 aa17.26■□□□□ 0.35
LRRTM1-206ENST00000433224 BICRAQ9NZM4 1560 aa17.25■□□□□ 0.35
LRRTM1-206ENST00000433224 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
LRRTM1-206ENST00000433224 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
LRRTM1-206ENST00000433224 HNRNPUQ00839 825 aaKnown RBP eCLIP17.21■□□□□ 0.35
LRRTM1-206ENST00000433224 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
LRRTM1-206ENST00000433224 SYNJ1O43426 1573 aa17.18■□□□□ 0.34
LRRTM1-206ENST00000433224 JPH4Q96JJ6 628 aa17.17■□□□□ 0.34
LRRTM1-206ENST00000433224 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.33
LRRTM1-206ENST00000433224 ESF1Q9H501 851 aaKnown RBP17.14■□□□□ 0.33
LRRTM1-206ENST00000433224 EIF4G2P78344 907 aaKnown RBP eCLIP17.14■□□□□ 0.33
LRRTM1-206ENST00000433224 RAB3GAP2Q9H2M9 1393 aa17.13■□□□□ 0.33
LRRTM1-206ENST00000433224 CLSPNQ9HAW4 1339 aa17.12■□□□□ 0.33
LRRTM1-206ENST00000433224 BCL11AQ9H165 835 aa17.12■□□□□ 0.33
LRRTM1-206ENST00000433224 IRX6P78412 446 aaPredicted RBP17.1■□□□□ 0.33
LRRTM1-206ENST00000433224 SUPT16HQ9Y5B9 1047 aaKnown RBP17.09■□□□□ 0.33
LRRTM1-206ENST00000433224 CFTRP13569 1480 aa17.09■□□□□ 0.33
LRRTM1-206ENST00000433224 CC2D2AQ9P2K1 1620 aa17.09■□□□□ 0.33
LRRTM1-206ENST00000433224 MRS2Q9HD23 443 aa17.09■□□□□ 0.33
LRRTM1-206ENST00000433224 ARHGAP35Q9NRY4 1499 aa17.08■□□□□ 0.32
LRRTM1-206ENST00000433224 SETD5Q9C0A6 1442 aa17.06■□□□□ 0.32
LRRTM1-206ENST00000433224 HNRNPMP52272 730 aaKnown RBP eCLIP17.06■□□□□ 0.32
LRRTM1-206ENST00000433224 FMN1Q68DA7 1419 aa17.06■□□□□ 0.32
LRRTM1-206ENST00000433224 GAPVD1Q14C86 1478 aa17.04■□□□□ 0.32
LRRTM1-206ENST00000433224 TMC1Q8TDI8 760 aa17.03■□□□□ 0.32
LRRTM1-206ENST00000433224 PKD2Q13563 968 aa17.02■□□□□ 0.31
LRRTM1-206ENST00000433224 RTL5Q5HYW3 569 aaPredicted RBP17.01■□□□□ 0.31
LRRTM1-206ENST00000433224 DCAF11Q8TEB1 546 aa17.01■□□□□ 0.31
LRRTM1-206ENST00000433224 CARD11Q9BXL7 1154 aa17.01■□□□□ 0.31
LRRTM1-206ENST00000433224 CUX1P39880 1505 aa17.01■□□□□ 0.31
LRRTM1-206ENST00000433224 ZNF644Q9H582 1327 aaPredicted RBP17■□□□□ 0.31
LRRTM1-206ENST00000433224 PLEKHG5O94827 1062 aa17■□□□□ 0.31
LRRTM1-206ENST00000433224 SLC24A1O60721 1099 aa16.99■□□□□ 0.31
LRRTM1-206ENST00000433224 MLECQ14165 292 aa16.99■□□□□ 0.31
LRRTM1-206ENST00000433224 CARMIL2Q6F5E8 1435 aa16.98■□□□□ 0.31
LRRTM1-206ENST00000433224 ARAP1Q96P48 1450 aa16.98■□□□□ 0.31
LRRTM1-206ENST00000433224 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
LRRTM1-206ENST00000433224 GGT6Q6P531 493 aa16.96■□□□□ 0.31
LRRTM1-206ENST00000433224 KIF21BO75037 1637 aa16.96■□□□□ 0.31
LRRTM1-206ENST00000433224 ANP32EQ9BTT0 268 aa16.95■□□□□ 0.3
LRRTM1-206ENST00000433224 UNC13AQ9UPW8 1703 aa16.95■□□□□ 0.3
LRRTM1-206ENST00000433224 DAXXQ9UER7 740 aaPredicted RBP16.94■□□□□ 0.3
LRRTM1-206ENST00000433224 ARID4BQ4LE39 1312 aaPredicted RBP16.94■□□□□ 0.3
LRRTM1-206ENST00000433224 PHLDB1Q86UU1 1377 aa16.92■□□□□ 0.3
LRRTM1-206ENST00000433224 DHX57Q6P158 1386 aaKnown RBP16.91■□□□□ 0.3
LRRTM1-206ENST00000433224 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
LRRTM1-206ENST00000433224 HSPA5P11021 654 aaKnown RBP16.9■□□□□ 0.3
LRRTM1-206ENST00000433224 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
LRRTM1-206ENST00000433224 NUP155O75694 1391 aa16.9■□□□□ 0.3
LRRTM1-206ENST00000433224 TOPBP1Q92547 1522 aa16.88■□□□□ 0.29
LRRTM1-206ENST00000433224 CANXP27824 592 aaKnown RBP16.87■□□□□ 0.29
LRRTM1-206ENST00000433224 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
LRRTM1-206ENST00000433224 PRXQ9BXM0 1461 aa16.87■□□□□ 0.29
LRRTM1-206ENST00000433224 PPP1R15AO75807 674 aaPredicted RBP16.86■□□□□ 0.29
LRRTM1-206ENST00000433224 SAFB2Q14151 953 aaKnown RBP eCLIP16.86■□□□□ 0.29
LRRTM1-206ENST00000433224 CYB5RLQ6IPT4 315 aa16.85■□□□□ 0.29
LRRTM1-206ENST00000433224 TNNT2P45379 298 aaPredicted RBP16.85■□□□□ 0.29
LRRTM1-206ENST00000433224 NPM2Q86SE8 214 aaKnown RBP16.84■□□□□ 0.29
LRRTM1-206ENST00000433224 PTPRGP23470 1445 aa16.84■□□□□ 0.29
LRRTM1-206ENST00000433224 EFCAB2Q5VUJ9 269 aa16.84■□□□□ 0.29
LRRTM1-206ENST00000433224 TOP2BQ02880 1626 aa16.83■□□□□ 0.29
LRRTM1-206ENST00000433224 NBR1Q14596 966 aa16.83■□□□□ 0.28
LRRTM1-206ENST00000433224 TRHP20396 242 aaPredicted RBP16.83■□□□□ 0.28
LRRTM1-206ENST00000433224 TSHZ2Q9NRE2 1034 aa16.83■□□□□ 0.28
LRRTM1-206ENST00000433224 KIF3BO15066 747 aa16.82■□□□□ 0.28
LRRTM1-206ENST00000433224 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
LRRTM1-206ENST00000433224 NUTM2DQ5VT03 806 aaPredicted RBP16.82■□□□□ 0.28
LRRTM1-206ENST00000433224 WDR43Q15061 677 aaKnown RBP eCLIP16.77■□□□□ 0.28
LRRTM1-206ENST00000433224 ANP32AP39687 249 aaKnown RBP16.76■□□□□ 0.27
LRRTM1-206ENST00000433224 CCDC18Q5T9S5 1454 aa16.75■□□□□ 0.27
LRRTM1-206ENST00000433224 ANKRD30AQ9BXX3 1397 aa16.75■□□□□ 0.27
LRRTM1-206ENST00000433224 PPM1GO15355 546 aaPredicted RBP16.75■□□□□ 0.27
LRRTM1-206ENST00000433224 NEFMP07197 916 aa16.75■□□□□ 0.27
LRRTM1-206ENST00000433224 NEUROD2Q15784 382 aa16.75■□□□□ 0.27
LRRTM1-206ENST00000433224 LRRC9Q6ZRR7 1453 aa16.74■□□□□ 0.27
LRRTM1-206ENST00000433224 STK26Q9P289 416 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms