RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 BIVM-ERCC5R4GMW8 1640 aa10.75□□□□□ -0.69
COL28A1-202ENST00000430711 PPP4R3CPQ6ZMV5 832 aa10.74□□□□□ -0.69
COL28A1-202ENST00000430711 WDR62O43379 1518 aa10.74□□□□□ -0.69
COL28A1-202ENST00000430711 PDS5BQ9NTI5 1447 aa10.73□□□□□ -0.69
COL28A1-202ENST00000430711 PRXQ9BXM0 1461 aa10.72□□□□□ -0.69
COL28A1-202ENST00000430711 ARHGEF11O15085 1522 aa10.71□□□□□ -0.69
COL28A1-202ENST00000430711 CENPBP07199 599 aaPredicted RBP10.71□□□□□ -0.69
COL28A1-202ENST00000430711 MRC2Q9UBG0 1479 aa10.71□□□□□ -0.7
COL28A1-202ENST00000430711 DHX57Q6P158 1386 aaKnown RBP10.7□□□□□ -0.7
COL28A1-202ENST00000430711 PELP1Q8IZL8 1130 aaKnown RBP10.67□□□□□ -0.7
COL28A1-202ENST00000430711 APLP2Q06481 763 aa10.67□□□□□ -0.7
COL28A1-202ENST00000430711 ILDR1Q86SU0 546 aaPredicted RBP10.67□□□□□ -0.7
COL28A1-202ENST00000430711 ITGAEP38570 1179 aa10.66□□□□□ -0.7
COL28A1-202ENST00000430711 ARHGAP35Q9NRY4 1499 aa10.66□□□□□ -0.7
COL28A1-202ENST00000430711 ERICH3Q5RHP9 1530 aa10.65□□□□□ -0.7
COL28A1-202ENST00000430711 TRHP20396 242 aaPredicted RBP10.65□□□□□ -0.7
COL28A1-202ENST00000430711 KCNH8Q96L42 1107 aa10.62□□□□□ -0.71
COL28A1-202ENST00000430711 RRBP1Q9P2E9 1410 aaKnown RBP10.59□□□□□ -0.71
COL28A1-202ENST00000430711 CFTRP13569 1480 aa10.59□□□□□ -0.71
COL28A1-202ENST00000430711 KIF27Q86VH2 1401 aa10.58□□□□□ -0.72
COL28A1-202ENST00000430711 MAPK8IP2Q13387 824 aaPredicted RBP10.58□□□□□ -0.72
COL28A1-202ENST00000430711 MAPKBP1O60336 1514 aa10.56□□□□□ -0.72
COL28A1-202ENST00000430711 P3H3Q8IVL6 736 aa10.56□□□□□ -0.72
COL28A1-202ENST00000430711 IGF1RP08069 1367 aa10.55□□□□□ -0.72
COL28A1-202ENST00000430711 CCNB3Q8WWL7 1395 aa10.55□□□□□ -0.72
COL28A1-202ENST00000430711 CYB5RLQ6IPT4 315 aa10.53□□□□□ -0.72
COL28A1-202ENST00000430711 RAB3GAP2Q9H2M9 1393 aa10.53□□□□□ -0.72
COL28A1-202ENST00000430711 PHLDB1Q86UU1 1377 aa10.53□□□□□ -0.72
COL28A1-202ENST00000430711 FGD5Q6ZNL6 1462 aa10.52□□□□□ -0.73
COL28A1-202ENST00000430711 SIN3AQ96ST3 1273 aa10.52□□□□□ -0.73
COL28A1-202ENST00000430711 TIAM1Q13009 1591 aa10.51□□□□□ -0.73
COL28A1-202ENST00000430711 HIRIP3Q9BW71 556 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-202ENST00000430711 CADPSQ9ULU8 1353 aa10.5□□□□□ -0.73
COL28A1-202ENST00000430711 PCF11O94913 1555 aaKnown RBP10.49□□□□□ -0.73
COL28A1-202ENST00000430711 PRDM2Q13029 1718 aa10.49□□□□□ -0.73
COL28A1-202ENST00000430711 WDR97A6NE52 1622 aa10.48□□□□□ -0.73
COL28A1-202ENST00000430711 RAD54L2Q9Y4B4 1467 aa10.48□□□□□ -0.73
COL28A1-202ENST00000430711 CARMIL1Q5VZK9 1371 aa10.47□□□□□ -0.73
COL28A1-202ENST00000430711 SUPT16HQ9Y5B9 1047 aaKnown RBP10.47□□□□□ -0.73
COL28A1-202ENST00000430711 LRRC9Q6ZRR7 1453 aa10.46□□□□□ -0.73
COL28A1-202ENST00000430711 FHOD3Q2V2M9 1422 aa10.46□□□□□ -0.73
COL28A1-202ENST00000430711 ATP1B4Q9UN42 357 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-202ENST00000430711 CLSPNQ9HAW4 1339 aa10.45□□□□□ -0.74
COL28A1-202ENST00000430711 FAM50AQ14320 339 aaKnown RBP10.45□□□□□ -0.74
COL28A1-202ENST00000430711 CFAP43Q8NDM7 1665 aa10.42□□□□□ -0.74
COL28A1-202ENST00000430711 NPM3O75607 178 aaKnown RBP10.41□□□□□ -0.74
COL28A1-202ENST00000430711 DDX10Q13206 875 aaKnown RBP10.4□□□□□ -0.74
COL28A1-202ENST00000430711 SETD5Q9C0A6 1442 aa10.4□□□□□ -0.74
COL28A1-202ENST00000430711 LRRIQ1Q96JM4 1722 aa10.4□□□□□ -0.74
COL28A1-202ENST00000430711 BCANQ96GW7 911 aa10.39□□□□□ -0.75
COL28A1-202ENST00000430711 FANCD2Q9BXW9 1451 aa10.39□□□□□ -0.75
COL28A1-202ENST00000430711 PTPRKQ15262 1439 aa10.38□□□□□ -0.75
COL28A1-202ENST00000430711 POLA1P09884 1462 aaPredicted RBP10.38□□□□□ -0.75
COL28A1-202ENST00000430711 RNF39Q9H2S5 420 aa10.36□□□□□ -0.75
COL28A1-202ENST00000430711 CHD1O14646 1710 aa10.36□□□□□ -0.75
COL28A1-202ENST00000430711 C1QBPQ07021 282 aaKnown RBP10.36□□□□□ -0.75
COL28A1-202ENST00000430711 SP7Q8TDD2 431 aaPredicted RBP10.36□□□□□ -0.75
COL28A1-202ENST00000430711 MAP3K1Q13233 1512 aa10.35□□□□□ -0.75
COL28A1-202ENST00000430711 URB2Q14146 1524 aaKnown RBP10.35□□□□□ -0.75
COL28A1-202ENST00000430711 TOPBP1Q92547 1522 aa10.34□□□□□ -0.75
COL28A1-202ENST00000430711 AQRO60306 1485 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL28A1-202ENST00000430711 TSHZ2Q9NRE2 1034 aa10.34□□□□□ -0.75
COL28A1-202ENST00000430711 NCBP3Q53F19 620 aaKnown RBP10.33□□□□□ -0.76
COL28A1-202ENST00000430711 IFT140Q96RY7 1462 aa10.33□□□□□ -0.76
COL28A1-202ENST00000430711 PPP1R15AO75807 674 aaPredicted RBP10.33□□□□□ -0.76
COL28A1-202ENST00000430711 CNKSR2Q8WXI2 1034 aa10.33□□□□□ -0.76
COL28A1-202ENST00000430711 SNAPC4Q5SXM2 1469 aa10.32□□□□□ -0.76
COL28A1-202ENST00000430711 DNMBPQ6XZF7 1577 aa10.32□□□□□ -0.76
COL28A1-202ENST00000430711 CTTNBP2Q8WZ74 1663 aa10.31□□□□□ -0.76
COL28A1-202ENST00000430711 TDRD9Q8NDG6 1382 aaKnown RBP10.31□□□□□ -0.76
COL28A1-202ENST00000430711 ABCA10Q8WWZ4 1543 aa10.31□□□□□ -0.76
COL28A1-202ENST00000430711 ZNF608Q9ULD9 1512 aaPredicted RBP10.31□□□□□ -0.76
COL28A1-202ENST00000430711 TRIM52Q96A61 297 aa10.3□□□□□ -0.76
COL28A1-202ENST00000430711 MAGI3Q5TCQ9 1506 aa10.3□□□□□ -0.76
COL28A1-202ENST00000430711 FHAD1B1AJZ9 1412 aa10.29□□□□□ -0.76
COL28A1-202ENST00000430711 FYCO1Q9BQS8 1478 aa10.29□□□□□ -0.76
COL28A1-202ENST00000430711 FGD6Q6ZV73 1430 aa10.29□□□□□ -0.76
COL28A1-202ENST00000430711 CASKIN1Q8WXD9 1431 aa10.29□□□□□ -0.76
COL28A1-202ENST00000430711 KDM5BQ9UGL1 1544 aa10.29□□□□□ -0.76
COL28A1-202ENST00000430711 EIF4G3O43432 1585 aaKnown RBP10.28□□□□□ -0.76
COL28A1-202ENST00000430711 KDM6BO15054 1643 aa10.28□□□□□ -0.76
COL28A1-202ENST00000430711 ARID3CA6NKF2 412 aa10.28□□□□□ -0.76
COL28A1-202ENST00000430711 ERCC6L2Q5T890 1561 aa10.27□□□□□ -0.76
COL28A1-202ENST00000430711 CCDC18Q5T9S5 1454 aa10.27□□□□□ -0.77
COL28A1-202ENST00000430711 DENND4BO75064 1496 aaPredicted RBP10.27□□□□□ -0.77
COL28A1-202ENST00000430711 FKBP8Q14318 412 aa10.27□□□□□ -0.77
COL28A1-202ENST00000430711 PTPN23Q9H3S7 1636 aa10.26□□□□□ -0.77
COL28A1-202ENST00000430711 CLASP1Q7Z460 1538 aa10.26□□□□□ -0.77
COL28A1-202ENST00000430711 NCOA2Q15596 1464 aa10.24□□□□□ -0.77
COL28A1-202ENST00000430711 CHIC2Q9UKJ5 165 aa10.24□□□□□ -0.77
COL28A1-202ENST00000430711 EFCAB5A4FU69 1503 aa10.24□□□□□ -0.77
COL28A1-202ENST00000430711 SAMD9Q5K651 1589 aa10.24□□□□□ -0.77
COL28A1-202ENST00000430711 CUL7Q14999 1698 aa10.24□□□□□ -0.77
COL28A1-202ENST00000430711 ABCA5Q8WWZ7 1642 aa10.23□□□□□ -0.77
COL28A1-202ENST00000430711 NAIPQ13075 1403 aa10.23□□□□□ -0.77
COL28A1-202ENST00000430711 RRP7BPQ9NSQ0 103 aa10.23□□□□□ -0.77
COL28A1-202ENST00000430711 GRIN2BQ13224 1484 aa10.22□□□□□ -0.77
COL28A1-202ENST00000430711 MTUS2Q5JR59 1369 aa10.22□□□□□ -0.77
COL28A1-202ENST00000430711 KDM4FA0A1W2PPD8 638 aa10.21□□□□□ -0.78
COL28A1-202ENST00000430711 CCDC184Q52MB2 194 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms