RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NEFLP07196 543 aa18.55■□□□□ 0.56
PTCH1-207ENST00000429896 GAPVD1Q14C86 1478 aa18.54■□□□□ 0.56
PTCH1-207ENST00000429896 LAMC3Q9Y6N6 1575 aa18.53■□□□□ 0.56
PTCH1-207ENST00000429896 NEUROD1Q13562 356 aa18.52■□□□□ 0.56
PTCH1-207ENST00000429896 FHAD1B1AJZ9 1412 aa18.52■□□□□ 0.55
PTCH1-207ENST00000429896 PLPPR3Q6T4P5 718 aa18.51■□□□□ 0.55
PTCH1-207ENST00000429896 CHIC2Q9UKJ5 165 aa18.5■□□□□ 0.55
PTCH1-207ENST00000429896 PEG3Q9GZU2 1588 aa18.5■□□□□ 0.55
PTCH1-207ENST00000429896 BCANQ96GW7 911 aa18.5■□□□□ 0.55
PTCH1-207ENST00000429896 AQRO60306 1485 aaKnown RBP eCLIP18.49■□□□□ 0.553e-7■■■□□ 17
PTCH1-207ENST00000429896 IFT140Q96RY7 1462 aa18.49■□□□□ 0.55
PTCH1-207ENST00000429896 JPH4Q96JJ6 628 aa18.46■□□□□ 0.55
PTCH1-207ENST00000429896 CFDP1Q9UEE9 299 aaPredicted RBP18.46■□□□□ 0.55
PTCH1-207ENST00000429896 ZNF326Q5BKZ1 582 aaKnown RBP18.44■□□□□ 0.54
PTCH1-207ENST00000429896 TOPBP1Q92547 1522 aa18.44■□□□□ 0.54
PTCH1-207ENST00000429896 STAG3Q9UJ98 1225 aa18.43■□□□□ 0.54
PTCH1-207ENST00000429896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.43■□□□□ 0.54
PTCH1-207ENST00000429896 SLC4A1APQ9BWU0 796 aaKnown RBP18.41■□□□□ 0.54
PTCH1-207ENST00000429896 GRIN2BQ13224 1484 aa18.41■□□□□ 0.54
PTCH1-207ENST00000429896 IGF1RP08069 1367 aa18.38■□□□□ 0.53
PTCH1-207ENST00000429896 DNMBPQ6XZF7 1577 aa18.37■□□□□ 0.53
PTCH1-207ENST00000429896 FMN1Q68DA7 1419 aa18.37■□□□□ 0.53
PTCH1-207ENST00000429896 ARID4BQ4LE39 1312 aaPredicted RBP18.37■□□□□ 0.53
PTCH1-207ENST00000429896 CCNB3Q8WWL7 1395 aa18.37■□□□□ 0.53
PTCH1-207ENST00000429896 CHGAP10645 457 aaKnown RBP18.36■□□□□ 0.53
PTCH1-207ENST00000429896 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
PTCH1-207ENST00000429896 POLA1P09884 1462 aaPredicted RBP18.33■□□□□ 0.53
PTCH1-207ENST00000429896 CUX1P39880 1505 aa18.32■□□□□ 0.52
PTCH1-207ENST00000429896 CYB5RLQ6IPT4 315 aa18.32■□□□□ 0.52
PTCH1-207ENST00000429896 SYNJ1O43426 1573 aa18.3■□□□□ 0.52
PTCH1-207ENST00000429896 PTPRGP23470 1445 aa18.29■□□□□ 0.52
PTCH1-207ENST00000429896 FHOD3Q2V2M9 1422 aa18.29■□□□□ 0.52
PTCH1-207ENST00000429896 RRP7BPQ9NSQ0 103 aa18.28■□□□□ 0.52
PTCH1-207ENST00000429896 TOP2BQ02880 1626 aa18.27■□□□□ 0.52
PTCH1-207ENST00000429896 VPS8Q8N3P4 1428 aa18.25■□□□□ 0.51
PTCH1-207ENST00000429896 DAXXQ9UER7 740 aaPredicted RBP18.25■□□□□ 0.51
PTCH1-207ENST00000429896 SNAPC4Q5SXM2 1469 aa18.23■□□□□ 0.51
PTCH1-207ENST00000429896 ACIN1Q9UKV3 1341 aaKnown RBP18.17■□□□□ 0.5
PTCH1-207ENST00000429896 EFCAB2Q5VUJ9 269 aa18.17■□□□□ 0.5
PTCH1-207ENST00000429896 URB2Q14146 1524 aaKnown RBP18.16■□□□□ 0.5
PTCH1-207ENST00000429896 ARHGAP35Q9NRY4 1499 aa18.15■□□□□ 0.5
PTCH1-207ENST00000429896 TONSLQ96HA7 1378 aa18.13■□□□□ 0.49
PTCH1-207ENST00000429896 ABCA10Q8WWZ4 1543 aa18.13■□□□□ 0.49
PTCH1-207ENST00000429896 PRG4Q92954 1404 aaPredicted RBP18.11■□□□□ 0.49
PTCH1-207ENST00000429896 CCDC18Q5T9S5 1454 aa18.09■□□□□ 0.49
PTCH1-207ENST00000429896 PPP1R15AO75807 674 aaPredicted RBP18.07■□□□□ 0.48
PTCH1-207ENST00000429896 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
PTCH1-207ENST00000429896 MLECQ14165 292 aa18.06■□□□□ 0.48
PTCH1-207ENST00000429896 KANK1Q14678 1352 aa18.04■□□□□ 0.48
PTCH1-207ENST00000429896 SYNJ2O15056 1496 aa18.03■□□□□ 0.48
PTCH1-207ENST00000429896 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.48
PTCH1-207ENST00000429896 MAGI1Q96QZ7 1491 aaPredicted RBP18.01■□□□□ 0.47
PTCH1-207ENST00000429896 KDM2AQ9Y2K7 1162 aa18■□□□□ 0.47
PTCH1-207ENST00000429896 FAM69CQ0P6D2 419 aa17.99■□□□□ 0.47
PTCH1-207ENST00000429896 BCL11AQ9H165 835 aa17.98■□□□□ 0.47
PTCH1-207ENST00000429896 KIF21BO75037 1637 aa17.98■□□□□ 0.47
PTCH1-207ENST00000429896 ZNF608Q9ULD9 1512 aaPredicted RBP17.98■□□□□ 0.47
PTCH1-207ENST00000429896 HNRNPMP52272 730 aaKnown RBP eCLIP17.95■□□□□ 0.46
PTCH1-207ENST00000429896 GGT6Q6P531 493 aa17.95■□□□□ 0.46
PTCH1-207ENST00000429896 RSPH4AQ5TD94 716 aa17.95■□□□□ 0.46
PTCH1-207ENST00000429896 PRXQ9BXM0 1461 aa17.94■□□□□ 0.46
PTCH1-207ENST00000429896 PRDM2Q13029 1718 aa17.93■□□□□ 0.46
PTCH1-207ENST00000429896 KIAA0586Q9BVV6 1533 aa17.93■□□□□ 0.46
PTCH1-207ENST00000429896 CLSPNQ9HAW4 1339 aa17.93■□□□□ 0.46
PTCH1-207ENST00000429896 SPAG9O60271 1321 aaKnown RBP17.93■□□□□ 0.46
PTCH1-207ENST00000429896 SENP3Q9H4L4 574 aaPredicted RBP17.92■□□□□ 0.46
PTCH1-207ENST00000429896 GRIN2AQ12879 1464 aa17.92■□□□□ 0.46
PTCH1-207ENST00000429896 ANKRD30AQ9BXX3 1397 aa17.91■□□□□ 0.46
PTCH1-207ENST00000429896 CUL7Q14999 1698 aa17.91■□□□□ 0.46
PTCH1-207ENST00000429896 BIVM-ERCC5R4GMW8 1640 aa17.91■□□□□ 0.46
PTCH1-207ENST00000429896 RGL3Q3MIN7 710 aa17.9■□□□□ 0.46
PTCH1-207ENST00000429896 KIF21AQ7Z4S6 1674 aa17.89■□□□□ 0.45
PTCH1-207ENST00000429896 EFCAB5A4FU69 1503 aa17.87■□□□□ 0.45
PTCH1-207ENST00000429896 C14orf37Q86TY3 774 aa17.85■□□□□ 0.45
PTCH1-207ENST00000429896 ZNF316A6NFI3 1004 aaPredicted RBP17.85■□□□□ 0.45
PTCH1-207ENST00000429896 CASKIN1Q8WXD9 1431 aa17.84■□□□□ 0.45
PTCH1-207ENST00000429896 WDR62O43379 1518 aa17.84■□□□□ 0.45
PTCH1-207ENST00000429896 SLC24A1O60721 1099 aa17.84■□□□□ 0.45
PTCH1-207ENST00000429896 KIF3BO15066 747 aa17.83■□□□□ 0.44
PTCH1-207ENST00000429896 ANP32CO43423 234 aa17.83■□□□□ 0.44
PTCH1-207ENST00000429896 IQGAP2Q13576 1575 aa17.83■□□□□ 0.44
PTCH1-207ENST00000429896 HDGFP51858 240 aaKnown RBP17.82■□□□□ 0.44
PTCH1-207ENST00000429896 DIEXFQ68CQ4 756 aaKnown RBP17.82■□□□□ 0.44
PTCH1-207ENST00000429896 SETD5Q9C0A6 1442 aa17.79■□□□□ 0.44
PTCH1-207ENST00000429896 UACAQ9BZF9 1416 aa17.77■□□□□ 0.44
PTCH1-207ENST00000429896 FYCO1Q9BQS8 1478 aa17.76■□□□□ 0.43
PTCH1-207ENST00000429896 WASHC2CQ9Y4E1 1318 aa17.75■□□□□ 0.43
PTCH1-207ENST00000429896 NUP155O75694 1391 aa17.75■□□□□ 0.43
PTCH1-207ENST00000429896 NEFMP07197 916 aa17.74■□□□□ 0.43
PTCH1-207ENST00000429896 PKD2Q13563 968 aa17.73■□□□□ 0.43
PTCH1-207ENST00000429896 ARAP1Q96P48 1450 aa17.72■□□□□ 0.43
PTCH1-207ENST00000429896 HECW1Q76N89 1606 aa17.71■□□□□ 0.42
PTCH1-207ENST00000429896 ARHGAP5Q13017 1502 aa17.69■□□□□ 0.42
PTCH1-207ENST00000429896 SCAF1Q9H7N4 1312 aaKnown RBP17.68■□□□□ 0.42
PTCH1-207ENST00000429896 MYOM3Q5VTT5 1437 aa17.67■□□□□ 0.42
PTCH1-207ENST00000429896 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
PTCH1-207ENST00000429896 EIF4G2P78344 907 aaKnown RBP eCLIP17.66■□□□□ 0.424e-7■□□□□ 8.6
PTCH1-207ENST00000429896 LRRC9Q6ZRR7 1453 aa17.66■□□□□ 0.42
PTCH1-207ENST00000429896 POGKQ9P215 609 aa17.66■□□□□ 0.42
PTCH1-207ENST00000429896 RTL5Q5HYW3 569 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms