RNA–Protein interactions for RNA: ENST00000429747.5

CPNE4-201, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 4,184 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-201ENST00000429747 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
CPNE4-201ENST00000429747 RAB3GAP2Q9H2M9 1393 aa17.31■□□□□ 0.36
CPNE4-201ENST00000429747 FBLN2P98095 1184 aa17.31■□□□□ 0.36
CPNE4-201ENST00000429747 MYT1LQ9UL68 1186 aa17.29■□□□□ 0.36
CPNE4-201ENST00000429747 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
CPNE4-201ENST00000429747 TSHZ2Q9NRE2 1034 aa17.27■□□□□ 0.36
CPNE4-201ENST00000429747 SETD5Q9C0A6 1442 aa17.26■□□□□ 0.35
CPNE4-201ENST00000429747 CUX2O14529 1486 aa17.26■□□□□ 0.35
CPNE4-201ENST00000429747 CARMIL1Q5VZK9 1371 aa17.26■□□□□ 0.35
CPNE4-201ENST00000429747 SENP3-EIF4A1A0A087X0R7 540 aa17.24■□□□□ 0.35
CPNE4-201ENST00000429747 SALL2Q9Y467 1007 aaPredicted RBP17.23■□□□□ 0.35
CPNE4-201ENST00000429747 ANP32AP39687 249 aaKnown RBP17.23■□□□□ 0.35
CPNE4-201ENST00000429747 NPM2Q86SE8 214 aaKnown RBP17.23■□□□□ 0.35
CPNE4-201ENST00000429747 CCDC136Q96JN2 1154 aa17.19■□□□□ 0.34
CPNE4-201ENST00000429747 ATAD2BQ9ULI0 1458 aa17.19■□□□□ 0.34
CPNE4-201ENST00000429747 TIMELESSQ9UNS1 1208 aa17.18■□□□□ 0.34
CPNE4-201ENST00000429747 FHAD1B1AJZ9 1412 aa17.17■□□□□ 0.34
CPNE4-201ENST00000429747 NBR1Q14596 966 aa17.17■□□□□ 0.34
CPNE4-201ENST00000429747 TMC1Q8TDI8 760 aa17.17■□□□□ 0.34
CPNE4-201ENST00000429747 SLC4A1APQ9BWU0 796 aaKnown RBP17.17■□□□□ 0.34
CPNE4-201ENST00000429747 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
CPNE4-201ENST00000429747 CCER2I3L3R5 266 aa17.16■□□□□ 0.34
CPNE4-201ENST00000429747 PPP1R15AO75807 674 aaPredicted RBP17.15■□□□□ 0.34
CPNE4-201ENST00000429747 KDM2AQ9Y2K7 1162 aa17.12■□□□□ 0.33
CPNE4-201ENST00000429747 KIF21BO75037 1637 aa17.11■□□□□ 0.33
CPNE4-201ENST00000429747 B4GALNT3Q6L9W6 998 aa17.08■□□□□ 0.32
CPNE4-201ENST00000429747 ARHGAP35Q9NRY4 1499 aa17.07■□□□□ 0.32
CPNE4-201ENST00000429747 HSPA5P11021 654 aaKnown RBP17.07■□□□□ 0.32
CPNE4-201ENST00000429747 PPP4R2Q9NY27 417 aa17.06■□□□□ 0.32
CPNE4-201ENST00000429747 SYNJ1O43426 1573 aa17.04■□□□□ 0.32
CPNE4-201ENST00000429747 FOXD1Q16676 465 aa17.04■□□□□ 0.32
CPNE4-201ENST00000429747 ZBTB47Q9UFB7 747 aaPredicted RBP17.04■□□□□ 0.32
CPNE4-201ENST00000429747 FHOD3Q2V2M9 1422 aa17.01■□□□□ 0.31
CPNE4-201ENST00000429747 ARAP1Q96P48 1450 aa16.98■□□□□ 0.31
CPNE4-201ENST00000429747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.98■□□□□ 0.31
CPNE4-201ENST00000429747 TSPY4P0CV99 314 aa16.97■□□□□ 0.31
CPNE4-201ENST00000429747 TSPY10P0CW01 314 aa16.97■□□□□ 0.31
CPNE4-201ENST00000429747 CFDP1Q9UEE9 299 aaPredicted RBP16.94■□□□□ 0.3
CPNE4-201ENST00000429747 BCL11AQ9H165 835 aa16.93■□□□□ 0.3
CPNE4-201ENST00000429747 IGF1RP08069 1367 aa16.93■□□□□ 0.3
CPNE4-201ENST00000429747 CANXP27824 592 aaKnown RBP16.92■□□□□ 0.3
CPNE4-201ENST00000429747 PHLDB1Q86UU1 1377 aa16.92■□□□□ 0.3
CPNE4-201ENST00000429747 TDRD9Q8NDG6 1382 aaKnown RBP16.91■□□□□ 0.3
CPNE4-201ENST00000429747 CARD11Q9BXL7 1154 aa16.91■□□□□ 0.3
CPNE4-201ENST00000429747 RGL3Q3MIN7 710 aa16.9■□□□□ 0.3
CPNE4-201ENST00000429747 MPHOSPH9Q99550 1183 aa16.9■□□□□ 0.3
CPNE4-201ENST00000429747 L3MBTL2Q969R5 705 aa16.9■□□□□ 0.3
CPNE4-201ENST00000429747 RRBP1Q9P2E9 1410 aaKnown RBP16.89■□□□□ 0.29
CPNE4-201ENST00000429747 CADPSQ9ULU8 1353 aa16.89■□□□□ 0.29
CPNE4-201ENST00000429747 FMN1Q68DA7 1419 aa16.88■□□□□ 0.29
CPNE4-201ENST00000429747 CHMP7Q8WUX9 453 aaPredicted RBP16.88■□□□□ 0.29
CPNE4-201ENST00000429747 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
CPNE4-201ENST00000429747 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
CPNE4-201ENST00000429747 NOP58Q9Y2X3 529 aaKnown RBP16.85■□□□□ 0.29
CPNE4-201ENST00000429747 PLEKHD1A6NEE1 506 aa16.81■□□□□ 0.28
CPNE4-201ENST00000429747 WDR43Q15061 677 aaKnown RBP eCLIP16.81■□□□□ 0.28
CPNE4-201ENST00000429747 ERICH3Q5RHP9 1530 aa16.8■□□□□ 0.28
CPNE4-201ENST00000429747 LRRC9Q6ZRR7 1453 aa16.8■□□□□ 0.28
CPNE4-201ENST00000429747 ERICH6BQ5W0A0 696 aa16.79■□□□□ 0.28
CPNE4-201ENST00000429747 CCDC18Q5T9S5 1454 aa16.79■□□□□ 0.28
CPNE4-201ENST00000429747 PKD2Q13563 968 aa16.77■□□□□ 0.27
CPNE4-201ENST00000429747 DCAF11Q8TEB1 546 aa16.76■□□□□ 0.27
CPNE4-201ENST00000429747 PRKRIP1Q9H875 184 aaPredicted RBP16.76■□□□□ 0.27
CPNE4-201ENST00000429747 LAS1LQ9Y4W2 734 aaKnown RBP16.76■□□□□ 0.27
CPNE4-201ENST00000429747 FGD5Q6ZNL6 1462 aa16.75■□□□□ 0.27
CPNE4-201ENST00000429747 DEKP35659 375 aaKnown RBP16.75■□□□□ 0.27
CPNE4-201ENST00000429747 TOP2BQ02880 1626 aa16.74■□□□□ 0.27
CPNE4-201ENST00000429747 CHGAP10645 457 aaKnown RBP16.73■□□□□ 0.27
CPNE4-201ENST00000429747 CC2D1BQ5T0F9 858 aaKnown RBP16.73■□□□□ 0.27
CPNE4-201ENST00000429747 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.73■□□□□ 0.27
CPNE4-201ENST00000429747 FGD6Q6ZV73 1430 aa16.72■□□□□ 0.27
CPNE4-201ENST00000429747 NCAPD3P42695 1498 aa16.69■□□□□ 0.26
CPNE4-201ENST00000429747 RAD54L2Q9Y4B4 1467 aa16.69■□□□□ 0.26
CPNE4-201ENST00000429747 CUX1P39880 1505 aa16.69■□□□□ 0.26
CPNE4-201ENST00000429747 WDR97A6NE52 1622 aa16.69■□□□□ 0.26
CPNE4-201ENST00000429747 EIF5BO60841 1220 aaKnown RBP16.69■□□□□ 0.26
CPNE4-201ENST00000429747 NUDCQ9Y266 331 aa16.68■□□□□ 0.26
CPNE4-201ENST00000429747 WASHC2AQ641Q2 1341 aa16.68■□□□□ 0.26
CPNE4-201ENST00000429747 FANCD2Q9BXW9 1451 aa16.68■□□□□ 0.26
CPNE4-201ENST00000429747 NEFMP07197 916 aa16.67■□□□□ 0.26
CPNE4-201ENST00000429747 UACAQ9BZF9 1416 aa16.67■□□□□ 0.26
CPNE4-201ENST00000429747 KNSTRNQ9Y448 316 aa16.64■□□□□ 0.25
CPNE4-201ENST00000429747 RTN4Q9NQC3 1192 aaKnown RBP16.64■□□□□ 0.25
CPNE4-201ENST00000429747 CFTRP13569 1480 aa16.64■□□□□ 0.25
CPNE4-201ENST00000429747 ZBED9Q6R2W3 1325 aa16.64■□□□□ 0.25
CPNE4-201ENST00000429747 DDRGK1Q96HY6 314 aa16.63■□□□□ 0.25
CPNE4-201ENST00000429747 ARXQ96QS3 562 aa16.63■□□□□ 0.25
CPNE4-201ENST00000429747 RGS3P49796 1198 aa16.62■□□□□ 0.25
CPNE4-201ENST00000429747 FANCIQ9NVI1 1328 aa16.62■□□□□ 0.25
CPNE4-201ENST00000429747 RCAN3Q9UKA8 241 aa16.62■□□□□ 0.25
CPNE4-201ENST00000429747 UPF2Q9HAU5 1272 aaKnown RBP16.62■□□□□ 0.25
CPNE4-201ENST00000429747 NUP155O75694 1391 aa16.61■□□□□ 0.25
CPNE4-201ENST00000429747 TIAM1Q13009 1591 aa16.6■□□□□ 0.25
CPNE4-201ENST00000429747 MYOM3Q5VTT5 1437 aa16.6■□□□□ 0.25
CPNE4-201ENST00000429747 CASKIN1Q8WXD9 1431 aa16.6■□□□□ 0.25
CPNE4-201ENST00000429747 CCDC184Q52MB2 194 aa16.59■□□□□ 0.25
CPNE4-201ENST00000429747 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
CPNE4-201ENST00000429747 CCDC7Q96M83 1385 aa16.58■□□□□ 0.25
CPNE4-201ENST00000429747 BICRAQ9NZM4 1560 aa16.58■□□□□ 0.24
CPNE4-201ENST00000429747 KIF7Q2M1P5 1343 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms