RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 RTL5Q5HYW3 569 aaPredicted RBP22.25■■□□□ 1.15
C9orf3-206ENST00000428313 TIMELESSQ9UNS1 1208 aa22.25■■□□□ 1.15
C9orf3-206ENST00000428313 SYNJ1O43426 1573 aa22.24■■□□□ 1.15
C9orf3-206ENST00000428313 RAPGEF2Q9Y4G8 1499 aa22.23■■□□□ 1.15
C9orf3-206ENST00000428313 CCNB3Q8WWL7 1395 aa22.22■■□□□ 1.15
C9orf3-206ENST00000428313 PAK3O75914 559 aaPredicted RBP22.21■■□□□ 1.15
C9orf3-206ENST00000428313 CCDC136Q96JN2 1154 aa22.2■■□□□ 1.14
C9orf3-206ENST00000428313 RAB3GAP2Q9H2M9 1393 aa22.19■■□□□ 1.14
C9orf3-206ENST00000428313 IRX6P78412 446 aaPredicted RBP22.18■■□□□ 1.14
C9orf3-206ENST00000428313 IL27Q8NEV9 243 aa22.18■■□□□ 1.14
C9orf3-206ENST00000428313 BICRAQ9NZM4 1560 aa22.18■■□□□ 1.14
C9orf3-206ENST00000428313 ARAP1Q96P48 1450 aa22.17■■□□□ 1.14
C9orf3-206ENST00000428313 KANK4Q5T7N3 995 aaPredicted RBP22.13■■□□□ 1.13
C9orf3-206ENST00000428313 HNRNPUQ00839 825 aaKnown RBP eCLIP22.13■■□□□ 1.13
C9orf3-206ENST00000428313 IPO9Q96P70 1041 aaKnown RBP22.12■■□□□ 1.13
C9orf3-206ENST00000428313 WASHC2AQ641Q2 1341 aa22.12■■□□□ 1.13
C9orf3-206ENST00000428313 C11orf95C9JLR9 678 aaPredicted RBP22.09■■□□□ 1.13
C9orf3-206ENST00000428313 ANP32AP39687 249 aaKnown RBP22.09■■□□□ 1.13
C9orf3-206ENST00000428313 ERICH3Q5RHP9 1530 aa22.08■■□□□ 1.13
C9orf3-206ENST00000428313 SETD5Q9C0A6 1442 aa22.07■■□□□ 1.12
C9orf3-206ENST00000428313 TOP2BQ02880 1626 aa22.06■■□□□ 1.12
C9orf3-206ENST00000428313 ATAD2BQ9ULI0 1458 aa22.04■■□□□ 1.12
C9orf3-206ENST00000428313 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.04■■□□□ 1.12
C9orf3-206ENST00000428313 ZBTB47Q9UFB7 747 aaPredicted RBP22.04■■□□□ 1.12
C9orf3-206ENST00000428313 BIVM-ERCC5R4GMW8 1640 aa22.03■■□□□ 1.12
C9orf3-206ENST00000428313 B4GALNT3Q6L9W6 998 aa22.02■■□□□ 1.12
C9orf3-206ENST00000428313 USP35Q9P2H5 1018 aa22.01■■□□□ 1.11
C9orf3-206ENST00000428313 RTN4Q9NQC3 1192 aaKnown RBP22.01■■□□□ 1.11
C9orf3-206ENST00000428313 WASHC2CQ9Y4E1 1318 aa22■■□□□ 1.11
C9orf3-206ENST00000428313 SIN3AQ96ST3 1273 aa21.97■■□□□ 1.11
C9orf3-206ENST00000428313 PRXQ9BXM0 1461 aa21.94■■□□□ 1.1
C9orf3-206ENST00000428313 NCAPD3P42695 1498 aa21.93■■□□□ 1.1
C9orf3-206ENST00000428313 HIRIP3Q9BW71 556 aaPredicted RBP21.92■■□□□ 1.1
C9orf3-206ENST00000428313 RANGAP1P46060 587 aaPredicted RBP21.91■■□□□ 1.1
C9orf3-206ENST00000428313 MAP3K1Q13233 1512 aa21.89■■□□□ 1.09
C9orf3-206ENST00000428313 ZBED9Q6R2W3 1325 aa21.87■■□□□ 1.09
C9orf3-206ENST00000428313 FHAD1B1AJZ9 1412 aa21.84■■□□□ 1.09
C9orf3-206ENST00000428313 TIAM1Q13009 1591 aa21.8■■□□□ 1.08
C9orf3-206ENST00000428313 PPM1GO15355 546 aaPredicted RBP21.8■■□□□ 1.08
C9orf3-206ENST00000428313 NEFMP07197 916 aa21.79■■□□□ 1.08
C9orf3-206ENST00000428313 PABPN1Q86U42 306 aaKnown RBP eCLIP21.78■■□□□ 1.08
C9orf3-206ENST00000428313 TONSLQ96HA7 1378 aa21.78■■□□□ 1.08
C9orf3-206ENST00000428313 NCOA2Q15596 1464 aa21.77■■□□□ 1.08
C9orf3-206ENST00000428313 PKNOX2Q96KN3 472 aa21.76■■□□□ 1.07
C9orf3-206ENST00000428313 ARHGAP35Q9NRY4 1499 aa21.75■■□□□ 1.07
C9orf3-206ENST00000428313 RSPH6AQ9H0K4 717 aa21.75■■□□□ 1.07
C9orf3-206ENST00000428313 RNF123Q5XPI4 1314 aa21.74■■□□□ 1.07
C9orf3-206ENST00000428313 SMG6Q86US8 1419 aaKnown RBP21.74■■□□□ 1.07
C9orf3-206ENST00000428313 EIF5BO60841 1220 aaKnown RBP21.72■■□□□ 1.07
C9orf3-206ENST00000428313 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
C9orf3-206ENST00000428313 CNTLNQ9NXG0 1405 aa21.71■■□□□ 1.07
C9orf3-206ENST00000428313 KIF27Q86VH2 1401 aa21.7■■□□□ 1.06
C9orf3-206ENST00000428313 BRPF3Q9ULD4 1205 aa21.69■■□□□ 1.06
C9orf3-206ENST00000428313 LRRC9Q6ZRR7 1453 aa21.67■■□□□ 1.06
C9orf3-206ENST00000428313 GSE1Q14687 1217 aa21.67■■□□□ 1.06
C9orf3-206ENST00000428313 KDM5BQ9UGL1 1544 aa21.65■■□□□ 1.06
C9orf3-206ENST00000428313 LAS1LQ9Y4W2 734 aaKnown RBP21.65■■□□□ 1.06
C9orf3-206ENST00000428313 PHLDB1Q86UU1 1377 aa21.64■■□□□ 1.06
C9orf3-206ENST00000428313 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.64■■□□□ 1.052e-9■■■■■ 67.4
C9orf3-206ENST00000428313 CUX1P39880 1505 aa21.64■■□□□ 1.05
C9orf3-206ENST00000428313 CCDC184Q52MB2 194 aa21.63■■□□□ 1.05
C9orf3-206ENST00000428313 AKNAQ7Z591 1439 aa21.61■■□□□ 1.05
C9orf3-206ENST00000428313 TCERG1O14776 1098 aaKnown RBP21.6■■□□□ 1.05
C9orf3-206ENST00000428313 PRKRIP1Q9H875 184 aaPredicted RBP21.6■■□□□ 1.05
C9orf3-206ENST00000428313 CFAP43Q8NDM7 1665 aa21.6■■□□□ 1.05
C9orf3-206ENST00000428313 FAM9BQ8IZU0 186 aa21.59■■□□□ 1.05
C9orf3-206ENST00000428313 FAM43AQ8N2R8 423 aa21.59■■□□□ 1.05
C9orf3-206ENST00000428313 NUDCQ9Y266 331 aa21.59■■□□□ 1.05
C9orf3-206ENST00000428313 MRS2Q9HD23 443 aa21.58■■□□□ 1.05
C9orf3-206ENST00000428313 GLIPR1L2Q4G1C9 344 aa21.57■■□□□ 1.04
C9orf3-206ENST00000428313 FAM50AQ14320 339 aaKnown RBP21.56■■□□□ 1.04
C9orf3-206ENST00000428313 UACAQ9BZF9 1416 aa21.56■■□□□ 1.04
C9orf3-206ENST00000428313 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
C9orf3-206ENST00000428313 MS4A1P11836 297 aa21.54■■□□□ 1.04
C9orf3-206ENST00000428313 CFTRP13569 1480 aa21.53■■□□□ 1.04
C9orf3-206ENST00000428313 HSPA5P11021 654 aaKnown RBP21.53■■□□□ 1.04
C9orf3-206ENST00000428313 NPM2Q86SE8 214 aaKnown RBP21.53■■□□□ 1.04
C9orf3-206ENST00000428313 DDRGK1Q96HY6 314 aa21.53■■□□□ 1.04
C9orf3-206ENST00000428313 CCDC18Q5T9S5 1454 aa21.51■■□□□ 1.03
C9orf3-206ENST00000428313 PDE4AP27815 886 aa21.51■■□□□ 1.03
C9orf3-206ENST00000428313 BACH2Q9BYV9 841 aa21.51■■□□□ 1.03
C9orf3-206ENST00000428313 ABCA5Q8WWZ7 1642 aa21.5■■□□□ 1.03
C9orf3-206ENST00000428313 NCOA1Q15788 1441 aa21.5■■□□□ 1.03
C9orf3-206ENST00000428313 FRAT1Q92837 279 aaPredicted RBP21.48■■□□□ 1.03
C9orf3-206ENST00000428313 POLR1AO95602 1720 aaPredicted RBP21.47■■□□□ 1.03
C9orf3-206ENST00000428313 EIF4G2P78344 907 aaKnown RBP eCLIP21.46■■□□□ 1.03
C9orf3-206ENST00000428313 CCDC7Q96M83 1385 aa21.46■■□□□ 1.03
C9orf3-206ENST00000428313 NFKBIBQ15653 356 aa21.46■■□□□ 1.03
C9orf3-206ENST00000428313 HFM1A2PYH4 1435 aa21.44■■□□□ 1.02
C9orf3-206ENST00000428313 PTPN23Q9H3S7 1636 aa21.44■■□□□ 1.02
C9orf3-206ENST00000428313 IGF1RP08069 1367 aa21.37■■□□□ 1.01
C9orf3-206ENST00000428313 PCF11O94913 1555 aaKnown RBP21.35■■□□□ 1.01
C9orf3-206ENST00000428313 ZMYND15Q9H091 742 aa21.33■■□□□ 1.01
C9orf3-206ENST00000428313 FGD6Q6ZV73 1430 aa21.3■■□□□ 1
C9orf3-206ENST00000428313 RRP1P56182 461 aaKnown RBP21.29■■□□□ 1
C9orf3-206ENST00000428313 HECW1Q76N89 1606 aa21.28■■□□□ 1
C9orf3-206ENST00000428313 NAIPQ13075 1403 aa21.28■■□□□ 1
C9orf3-206ENST00000428313 FMN1Q68DA7 1419 aa21.28■■□□□ 1
C9orf3-206ENST00000428313 CARMIL1Q5VZK9 1371 aa21.28■■□□□ 1
C9orf3-206ENST00000428313 VSIG10Q8N0Z9 540 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms