RNA–Protein interactions for RNA: ENST00000425718.1

APOE-202, Transcript of apolipoprotein E, humanhuman

TSL 1 (best)

Gene APOE, Length 923 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-202ENST00000425718 GOLGA3Q08378 1498 aa39.47■■■■□ 3.91
APOE-202ENST00000425718 IQGAP2Q13576 1575 aa39.38■■■■□ 3.89
APOE-202ENST00000425718 SHROOM2Q13796 1616 aa39.32■■■■□ 3.89
APOE-202ENST00000425718 DNAJC5Q9H3Z4 198 aa39.27■■■■□ 3.88
APOE-202ENST00000425718 UBTFP17480 764 aaKnown RBP39.25■■■■□ 3.87
APOE-202ENST00000425718 JPH4Q96JJ6 628 aa39.24■■■■□ 3.87
APOE-202ENST00000425718 UGGT2Q9NYU1 1516 aa39.16■■■■□ 3.86
APOE-202ENST00000425718 ARHGEF11O15085 1522 aa39.11■■■■□ 3.85
APOE-202ENST00000425718 CARMIL2Q6F5E8 1435 aa39.11■■■■□ 3.85
APOE-202ENST00000425718 PRG4Q92954 1404 aaPredicted RBP39.1■■■■□ 3.85
APOE-202ENST00000425718 EHMT2Q96KQ7 1210 aa39.09■■■■□ 3.85
APOE-202ENST00000425718 RIMBP3CA6NJZ7 1639 aa39.06■■■■□ 3.84
APOE-202ENST00000425718 RIMBP3BA6NNM3 1639 aa39.06■■■■□ 3.84
APOE-202ENST00000425718 RIMBP3Q9UFD9 1639 aa39.06■■■■□ 3.84
APOE-202ENST00000425718 TNIKQ9UKE5 1360 aa39.06■■■■□ 3.84
APOE-202ENST00000425718 EFCAB5A4FU69 1503 aa38.96■■■■□ 3.83
APOE-202ENST00000425718 KIAA0556O60303 1618 aa38.96■■■■□ 3.83
APOE-202ENST00000425718 DISP1Q96F81 1524 aa38.94■■■■□ 3.82
APOE-202ENST00000425718 SAMD9Q5K651 1589 aa38.92■■■■□ 3.82
APOE-202ENST00000425718 ERCC6L2Q5T890 1561 aa38.91■■■■□ 3.82
APOE-202ENST00000425718 LOC105371045A0A1W2PR82 267 aa38.84■■■■□ 3.81
APOE-202ENST00000425718 ARAP1Q96P48 1450 aa38.8■■■■□ 3.8
APOE-202ENST00000425718 RANGAP1P46060 587 aaPredicted RBP38.76■■■■□ 3.8
APOE-202ENST00000425718 PTPRGP23470 1445 aa38.75■■■■□ 3.79
APOE-202ENST00000425718 CLIP1P30622 1438 aa38.72■■■■□ 3.79
APOE-202ENST00000425718 ARHGAP35Q9NRY4 1499 aa38.69■■■■□ 3.78
APOE-202ENST00000425718 CEP162Q5TB80 1403 aa38.68■■■■□ 3.78
APOE-202ENST00000425718 CYB5RLQ6IPT4 315 aa38.65■■■■□ 3.78
APOE-202ENST00000425718 P3H3Q8IVL6 736 aa38.63■■■■□ 3.77
APOE-202ENST00000425718 FHOD3Q2V2M9 1422 aa38.61■■■■□ 3.77
APOE-202ENST00000425718 FMN1Q68DA7 1419 aa38.57■■■■□ 3.77
APOE-202ENST00000425718 TTBK1Q5TCY1 1321 aaPredicted RBP38.54■■■■□ 3.76
APOE-202ENST00000425718 UACAQ9BZF9 1416 aa38.53■■■■□ 3.76
APOE-202ENST00000425718 UHRF1BP1LA0JNW5 1464 aa38.5■■■■□ 3.75
APOE-202ENST00000425718 ABCA8O94911 1581 aa38.48■■■■□ 3.75
APOE-202ENST00000425718 ABCC2Q92887 1545 aa38.48■■■■□ 3.75
APOE-202ENST00000425718 RAPGEF6Q8TEU7 1601 aa38.45■■■■□ 3.75
APOE-202ENST00000425718 ADCY10Q96PN6 1610 aa38.43■■■■□ 3.74
APOE-202ENST00000425718 PLB1Q6P1J6 1458 aa38.41■■■■□ 3.74
APOE-202ENST00000425718 NPM1P06748 294 aaKnown RBP eCLIP38.36■■■■□ 3.73
APOE-202ENST00000425718 HECW1Q76N89 1606 aa38.32■■■■□ 3.73
APOE-202ENST00000425718 KDM5BQ9UGL1 1544 aa38.28■■■■□ 3.72
APOE-202ENST00000425718 CASKIN1Q8WXD9 1431 aa38.27■■■■□ 3.72
APOE-202ENST00000425718 FYCO1Q9BQS8 1478 aa38.26■■■■□ 3.72
APOE-202ENST00000425718 PCF11O94913 1555 aaKnown RBP38.23■■■■□ 3.71
APOE-202ENST00000425718 VPS8Q8N3P4 1428 aa38.21■■■■□ 3.71
APOE-202ENST00000425718 ZCCHC11Q5TAX3 1644 aaKnown RBP38.21■■■■□ 3.71
APOE-202ENST00000425718 NUP153P49790 1475 aaKnown RBP38.21■■■■□ 3.71
APOE-202ENST00000425718 MAPKBP1O60336 1514 aa38.15■■■■□ 3.7
APOE-202ENST00000425718 CCDC18Q5T9S5 1454 aa38.15■■■■□ 3.7
APOE-202ENST00000425718 ATP1B4Q9UN42 357 aaPredicted RBP38.13■■■■□ 3.69
APOE-202ENST00000425718 ATP10BO94823 1461 aa38.11■■■■□ 3.69
APOE-202ENST00000425718 EPRSP07814 1512 aaKnown RBP38.09■■■■□ 3.69
APOE-202ENST00000425718 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.04■■■■□ 3.68
APOE-202ENST00000425718 HNRNPUL2Q1KMD3 747 aaKnown RBP38.04■■■■□ 3.68
APOE-202ENST00000425718 LRRIQ1Q96JM4 1722 aa38.03■■■■□ 3.68
APOE-202ENST00000425718 CDK11AQ9UQ88 783 aaPredicted RBP38.02■■■■□ 3.68
APOE-202ENST00000425718 ASXL2Q76L83 1435 aa37.99■■■■□ 3.67
APOE-202ENST00000425718 CDK13Q14004 1512 aaKnown RBP37.97■■■■□ 3.67
APOE-202ENST00000425718 ARID3CA6NKF2 412 aa37.96■■■■□ 3.67
APOE-202ENST00000425718 WDR7Q9Y4E6 1490 aa37.96■■■■□ 3.67
APOE-202ENST00000425718 PLEKHD1A6NEE1 506 aa37.94■■■■□ 3.66
APOE-202ENST00000425718 CFAP43Q8NDM7 1665 aa37.9■■■■□ 3.66
APOE-202ENST00000425718 MAP3K1Q13233 1512 aa37.9■■■■□ 3.66
APOE-202ENST00000425718 APLP2Q06481 763 aa37.89■■■■□ 3.66
APOE-202ENST00000425718 ABCC10Q5T3U5 1492 aa37.84■■■■□ 3.65
APOE-202ENST00000425718 TIAM1Q13009 1591 aa37.83■■■■□ 3.65
APOE-202ENST00000425718 DIP2BQ9P265 1576 aa37.8■■■■□ 3.64
APOE-202ENST00000425718 TROQ12816 1431 aaPredicted RBP37.79■■■■□ 3.64
APOE-202ENST00000425718 GLI2P10070 1586 aa37.79■■■■□ 3.64
APOE-202ENST00000425718 KIF13AQ9H1H9 1805 aa37.77■■■■□ 3.64
APOE-202ENST00000425718 MTUS2Q5JR59 1369 aa37.74■■■■□ 3.63
APOE-202ENST00000425718 EHBP1L1Q8N3D4 1523 aa37.73■■■■□ 3.63
APOE-202ENST00000425718 KIF14Q15058 1648 aa37.72■■■■□ 3.63
APOE-202ENST00000425718 TRHP20396 242 aaPredicted RBP37.69■■■■□ 3.62
APOE-202ENST00000425718 KCNH8Q96L42 1107 aa37.69■■■■□ 3.62
APOE-202ENST00000425718 FAM69CQ0P6D2 419 aa37.68■■■■□ 3.62
APOE-202ENST00000425718 ABCA9Q8IUA7 1624 aa37.66■■■■□ 3.62
APOE-202ENST00000425718 MAGI3Q5TCQ9 1506 aa37.64■■■■□ 3.62
APOE-202ENST00000425718 LRRC9Q6ZRR7 1453 aa37.64■■■■□ 3.62
APOE-202ENST00000425718 MAP3K4Q9Y6R4 1608 aa37.61■■■■□ 3.61
APOE-202ENST00000425718 SUPT6HQ7KZ85 1726 aaKnown RBP37.6■■■■□ 3.61
APOE-202ENST00000425718 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.56■■■■□ 3.66e-6■■■■□ 21.5
APOE-202ENST00000425718 CD109Q6YHK3 1445 aa37.53■■■■□ 3.6
APOE-202ENST00000425718 MYO5CQ9NQX4 1742 aa37.52■■■■□ 3.6
APOE-202ENST00000425718 TSPOAP1O95153 1857 aa37.5■■■■□ 3.59
APOE-202ENST00000425718 TTC37Q6PGP7 1564 aa37.5■■■■□ 3.59
APOE-202ENST00000425718 TEX14Q8IWB6 1497 aa37.47■■■■□ 3.59
APOE-202ENST00000425718 ARAP3Q8WWN8 1544 aa37.45■■■■□ 3.59
APOE-202ENST00000425718 KANK4Q5T7N3 995 aaPredicted RBP37.44■■■■□ 3.58
APOE-202ENST00000425718 ITSN2Q9NZM3 1697 aa37.42■■■■□ 3.58
APOE-202ENST00000425718 CFAP74Q9C0B2 1584 aa37.42■■■■□ 3.58
APOE-202ENST00000425718 NCOA2Q15596 1464 aa37.41■■■■□ 3.58
APOE-202ENST00000425718 CDC42BPAQ5VT25 1732 aa37.39■■■■□ 3.58
APOE-202ENST00000425718 CCNB3Q8WWL7 1395 aa37.39■■■■□ 3.58
APOE-202ENST00000425718 PREX2Q70Z35 1606 aa37.39■■■■□ 3.58
APOE-202ENST00000425718 PPRC1Q5VV67 1664 aaKnown RBP37.38■■■■□ 3.57
APOE-202ENST00000425718 PLCH2O75038 1416 aa37.38■■■■□ 3.57
APOE-202ENST00000425718 PHLDB1Q86UU1 1377 aa37.34■■■■□ 3.57
APOE-202ENST00000425718 CDC42BPBQ9Y5S2 1711 aa37.33■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms