RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 KIAA0586Q9BVV6 1533 aa25.45■■□□□ 1.66
SHOX2-202ENST00000425436 KIF21BO75037 1637 aa25.44■■□□□ 1.66
SHOX2-202ENST00000425436 JPH4Q96JJ6 628 aa25.43■■□□□ 1.66
SHOX2-202ENST00000425436 ARHGEF11O15085 1522 aa25.37■■□□□ 1.65
SHOX2-202ENST00000425436 CTTNBP2Q8WZ74 1663 aa25.37■■□□□ 1.65
SHOX2-202ENST00000425436 RIMBP3CA6NJZ7 1639 aa25.37■■□□□ 1.65
SHOX2-202ENST00000425436 RIMBP3BA6NNM3 1639 aa25.37■■□□□ 1.65
SHOX2-202ENST00000425436 RIMBP3Q9UFD9 1639 aa25.37■■□□□ 1.65
SHOX2-202ENST00000425436 SHROOM2Q13796 1616 aa25.36■■□□□ 1.65
SHOX2-202ENST00000425436 IQGAP2Q13576 1575 aa25.36■■□□□ 1.65
SHOX2-202ENST00000425436 UBTFP17480 764 aaKnown RBP25.36■■□□□ 1.65
SHOX2-202ENST00000425436 GOLGA3Q08378 1498 aa25.34■■□□□ 1.65
SHOX2-202ENST00000425436 ERCC6L2Q5T890 1561 aa25.33■■□□□ 1.65
SHOX2-202ENST00000425436 PRG4Q92954 1404 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-202ENST00000425436 RANGAP1P46060 587 aaPredicted RBP25.29■■□□□ 1.64
SHOX2-202ENST00000425436 LOC105371045A0A1W2PR82 267 aa25.23■■□□□ 1.63
SHOX2-202ENST00000425436 CYB5RLQ6IPT4 315 aa25.23■■□□□ 1.63
SHOX2-202ENST00000425436 UGGT2Q9NYU1 1516 aa25.21■■□□□ 1.63
SHOX2-202ENST00000425436 ARAP1Q96P48 1450 aa25.2■■□□□ 1.62
SHOX2-202ENST00000425436 TTBK1Q5TCY1 1321 aaPredicted RBP25.19■■□□□ 1.62
SHOX2-202ENST00000425436 DISP1Q96F81 1524 aa25.18■■□□□ 1.62
SHOX2-202ENST00000425436 CARMIL2Q6F5E8 1435 aa25.17■■□□□ 1.62
SHOX2-202ENST00000425436 P3H3Q8IVL6 736 aa25.16■■□□□ 1.62
SHOX2-202ENST00000425436 KIAA0556O60303 1618 aa25.11■■□□□ 1.61
SHOX2-202ENST00000425436 TNIKQ9UKE5 1360 aa25.09■■□□□ 1.61
SHOX2-202ENST00000425436 PTPRGP23470 1445 aa25.07■■□□□ 1.6
SHOX2-202ENST00000425436 SAMD9Q5K651 1589 aa25.04■■□□□ 1.6
SHOX2-202ENST00000425436 FHOD3Q2V2M9 1422 aa24.98■■□□□ 1.59
SHOX2-202ENST00000425436 ARHGAP35Q9NRY4 1499 aa24.96■■□□□ 1.59
SHOX2-202ENST00000425436 EFCAB5A4FU69 1503 aa24.96■■□□□ 1.59
SHOX2-202ENST00000425436 CLIP1P30622 1438 aa24.92■■□□□ 1.58
SHOX2-202ENST00000425436 PLB1Q6P1J6 1458 aa24.89■■□□□ 1.57
SHOX2-202ENST00000425436 CEP162Q5TB80 1403 aa24.89■■□□□ 1.57
SHOX2-202ENST00000425436 UACAQ9BZF9 1416 aa24.89■■□□□ 1.57
SHOX2-202ENST00000425436 ADCY10Q96PN6 1610 aa24.88■■□□□ 1.57
SHOX2-202ENST00000425436 ABCA8O94911 1581 aa24.82■■□□□ 1.56
SHOX2-202ENST00000425436 NPM1P06748 294 aaKnown RBP eCLIP24.81■■□□□ 1.56
SHOX2-202ENST00000425436 ABCC2Q92887 1545 aa24.81■■□□□ 1.56
SHOX2-202ENST00000425436 ARID3CA6NKF2 412 aa24.81■■□□□ 1.56
SHOX2-202ENST00000425436 UHRF1BP1LA0JNW5 1464 aa24.8■■□□□ 1.56
SHOX2-202ENST00000425436 ATP1B4Q9UN42 357 aaPredicted RBP24.76■■□□□ 1.55
SHOX2-202ENST00000425436 RAPGEF6Q8TEU7 1601 aa24.76■■□□□ 1.55
SHOX2-202ENST00000425436 FMN1Q68DA7 1419 aa24.76■■□□□ 1.55
SHOX2-202ENST00000425436 KDM5BQ9UGL1 1544 aa24.7■■□□□ 1.55
SHOX2-202ENST00000425436 ZCCHC11Q5TAX3 1644 aaKnown RBP24.68■■□□□ 1.54
SHOX2-202ENST00000425436 NUP153P49790 1475 aaKnown RBP24.68■■□□□ 1.54
SHOX2-202ENST00000425436 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.67■■□□□ 1.54
SHOX2-202ENST00000425436 HNRNPUL2Q1KMD3 747 aaKnown RBP24.67■■□□□ 1.54
SHOX2-202ENST00000425436 ATP10BO94823 1461 aa24.67■■□□□ 1.54
SHOX2-202ENST00000425436 PCF11O94913 1555 aaKnown RBP24.63■■□□□ 1.53
SHOX2-202ENST00000425436 TRHP20396 242 aaPredicted RBP24.62■■□□□ 1.53
SHOX2-202ENST00000425436 CASKIN1Q8WXD9 1431 aa24.62■■□□□ 1.53
SHOX2-202ENST00000425436 MAPKBP1O60336 1514 aa24.61■■□□□ 1.53
SHOX2-202ENST00000425436 ASXL2Q76L83 1435 aa24.6■■□□□ 1.53
SHOX2-202ENST00000425436 HECW1Q76N89 1606 aa24.6■■□□□ 1.53
SHOX2-202ENST00000425436 CDK13Q14004 1512 aaKnown RBP24.58■■□□□ 1.52
SHOX2-202ENST00000425436 LRRIQ1Q96JM4 1722 aa24.58■■□□□ 1.52
SHOX2-202ENST00000425436 EPRSP07814 1512 aaKnown RBP24.56■■□□□ 1.52
SHOX2-202ENST00000425436 FYCO1Q9BQS8 1478 aa24.55■■□□□ 1.52
SHOX2-202ENST00000425436 VPS8Q8N3P4 1428 aa24.54■■□□□ 1.52
SHOX2-202ENST00000425436 KCNH8Q96L42 1107 aa24.54■■□□□ 1.52
SHOX2-202ENST00000425436 FAM69CQ0P6D2 419 aa24.51■■□□□ 1.51
SHOX2-202ENST00000425436 PLEKHD1A6NEE1 506 aa24.51■■□□□ 1.51
SHOX2-202ENST00000425436 WDR7Q9Y4E6 1490 aa24.5■■□□□ 1.51
SHOX2-202ENST00000425436 ABCC10Q5T3U5 1492 aa24.49■■□□□ 1.51
SHOX2-202ENST00000425436 KIF13AQ9H1H9 1805 aa24.47■■□□□ 1.51
SHOX2-202ENST00000425436 DIP2BQ9P265 1576 aa24.45■■□□□ 1.51
SHOX2-202ENST00000425436 CCDC18Q5T9S5 1454 aa24.45■■□□□ 1.5
SHOX2-202ENST00000425436 CDK11AQ9UQ88 783 aaPredicted RBP24.44■■□□□ 1.5
SHOX2-202ENST00000425436 MAGI3Q5TCQ9 1506 aa24.37■■□□□ 1.49
SHOX2-202ENST00000425436 GLI2P10070 1586 aa24.36■■□□□ 1.49
SHOX2-202ENST00000425436 TSPOAP1O95153 1857 aa24.35■■□□□ 1.49
SHOX2-202ENST00000425436 TROQ12816 1431 aaPredicted RBP24.34■■□□□ 1.49
SHOX2-202ENST00000425436 APLP2Q06481 763 aa24.32■■□□□ 1.48
SHOX2-202ENST00000425436 TIAM1Q13009 1591 aa24.31■■□□□ 1.48
SHOX2-202ENST00000425436 CFAP43Q8NDM7 1665 aa24.3■■□□□ 1.48
SHOX2-202ENST00000425436 MTUS2Q5JR59 1369 aa24.3■■□□□ 1.48
SHOX2-202ENST00000425436 KIF14Q15058 1648 aa24.29■■□□□ 1.48
SHOX2-202ENST00000425436 KANK4Q5T7N3 995 aaPredicted RBP24.29■■□□□ 1.48
SHOX2-202ENST00000425436 MAP3K4Q9Y6R4 1608 aa24.28■■□□□ 1.48
SHOX2-202ENST00000425436 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.28■■□□□ 1.48
SHOX2-202ENST00000425436 CD109Q6YHK3 1445 aa24.27■■□□□ 1.48
SHOX2-202ENST00000425436 ABCA9Q8IUA7 1624 aa24.27■■□□□ 1.47
SHOX2-202ENST00000425436 TTC37Q6PGP7 1564 aa24.24■■□□□ 1.47
SHOX2-202ENST00000425436 MAP3K1Q13233 1512 aa24.24■■□□□ 1.47
SHOX2-202ENST00000425436 PPRC1Q5VV67 1664 aaKnown RBP24.22■■□□□ 1.47
SHOX2-202ENST00000425436 LRRC9Q6ZRR7 1453 aa24.22■■□□□ 1.47
SHOX2-202ENST00000425436 EHBP1L1Q8N3D4 1523 aa24.2■■□□□ 1.46
SHOX2-202ENST00000425436 TRIM26Q12899 539 aaPredicted RBP24.19■■□□□ 1.46
SHOX2-202ENST00000425436 PPARGC1BQ86YN6 1023 aaKnown RBP24.17■■□□□ 1.46
SHOX2-202ENST00000425436 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.45
SHOX2-202ENST00000425436 MYO5CQ9NQX4 1742 aa24.13■■□□□ 1.45
SHOX2-202ENST00000425436 SUPT6HQ7KZ85 1726 aaKnown RBP24.13■■□□□ 1.45
SHOX2-202ENST00000425436 PLCH2O75038 1416 aa24.12■■□□□ 1.45
SHOX2-202ENST00000425436 TEX14Q8IWB6 1497 aa24.12■■□□□ 1.45
SHOX2-202ENST00000425436 NCOA2Q15596 1464 aa24.11■■□□□ 1.45
SHOX2-202ENST00000425436 CCNB3Q8WWL7 1395 aa24.1■■□□□ 1.45
SHOX2-202ENST00000425436 CDC42BPAQ5VT25 1732 aa24.09■■□□□ 1.45
SHOX2-202ENST00000425436 CDC42BPBQ9Y5S2 1711 aa24.08■■□□□ 1.45
SHOX2-202ENST00000425436 GPATCH8Q9UKJ3 1502 aaKnown RBP24.08■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms