RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PBRM1Q86U86 1689 aa16.21■□□□□ 0.19
CUX1-205ENST00000425244 EIF4G3O43432 1585 aaKnown RBP16.21■□□□□ 0.18
CUX1-205ENST00000425244 CUL7Q14999 1698 aa16.2■□□□□ 0.18
CUX1-205ENST00000425244 GRIN2BQ13224 1484 aa16.2■□□□□ 0.18
CUX1-205ENST00000425244 P3H3Q8IVL6 736 aa16.19■□□□□ 0.18
CUX1-205ENST00000425244 SNAPC4Q5SXM2 1469 aa16.16■□□□□ 0.18
CUX1-205ENST00000425244 CHMP7Q8WUX9 453 aaPredicted RBP16.13■□□□□ 0.17
CUX1-205ENST00000425244 FHAD1B1AJZ9 1412 aa16.13■□□□□ 0.17
CUX1-205ENST00000425244 ADAMTS12P58397 1594 aa16.11■□□□□ 0.17
CUX1-205ENST00000425244 APLP2Q06481 763 aa16.1■□□□□ 0.17
CUX1-205ENST00000425244 HNRNPUL2Q1KMD3 747 aaKnown RBP16.09■□□□□ 0.17
CUX1-205ENST00000425244 VPS8Q8N3P4 1428 aa16.07■□□□□ 0.16
CUX1-205ENST00000425244 ARAP1Q96P48 1450 aa16.07■□□□□ 0.16
CUX1-205ENST00000425244 ARHGAP35Q9NRY4 1499 aa16.07■□□□□ 0.16
CUX1-205ENST00000425244 ATP1B4Q9UN42 357 aaPredicted RBP16.06■□□□□ 0.16
CUX1-205ENST00000425244 CTTNBP2Q8WZ74 1663 aa16.05■□□□□ 0.16
CUX1-205ENST00000425244 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
CUX1-205ENST00000425244 GRIN2AQ12879 1464 aa16.01■□□□□ 0.15
CUX1-205ENST00000425244 FHOD3Q2V2M9 1422 aa16.01■□□□□ 0.15
CUX1-205ENST00000425244 SYNJ2O15056 1496 aa16■□□□□ 0.15
CUX1-205ENST00000425244 DIEXFQ68CQ4 756 aaKnown RBP15.97■□□□□ 0.15
CUX1-205ENST00000425244 IQGAP2Q13576 1575 aa15.95■□□□□ 0.14
CUX1-205ENST00000425244 CEP170Q5SW79 1584 aa15.92■□□□□ 0.14
CUX1-205ENST00000425244 KIAA0586Q9BVV6 1533 aa15.9■□□□□ 0.14
CUX1-205ENST00000425244 ARID3CA6NKF2 412 aa15.89■□□□□ 0.13
CUX1-205ENST00000425244 EFCAB5A4FU69 1503 aa15.89■□□□□ 0.13
CUX1-205ENST00000425244 KANK4Q5T7N3 995 aaPredicted RBP15.89■□□□□ 0.13
CUX1-205ENST00000425244 CHD1O14646 1710 aa15.88■□□□□ 0.13
CUX1-205ENST00000425244 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
CUX1-205ENST00000425244 JPH4Q96JJ6 628 aa15.87■□□□□ 0.13
CUX1-205ENST00000425244 SAMD9Q5K651 1589 aa15.85■□□□□ 0.13
CUX1-205ENST00000425244 NUP160Q12769 1436 aa15.84■□□□□ 0.13
CUX1-205ENST00000425244 ZNF316A6NFI3 1004 aaPredicted RBP15.84■□□□□ 0.13
CUX1-205ENST00000425244 PCF11O94913 1555 aaKnown RBP15.84■□□□□ 0.13
CUX1-205ENST00000425244 FMN1Q68DA7 1419 aa15.83■□□□□ 0.12
CUX1-205ENST00000425244 UGGT2Q9NYU1 1516 aa15.8■□□□□ 0.12
CUX1-205ENST00000425244 DISP1Q96F81 1524 aa15.8■□□□□ 0.12
CUX1-205ENST00000425244 KIAA0556O60303 1618 aa15.77■□□□□ 0.12
CUX1-205ENST00000425244 CASKIN1Q8WXD9 1431 aa15.77■□□□□ 0.11
CUX1-205ENST00000425244 NEUROD1Q13562 356 aa15.76■□□□□ 0.11
CUX1-205ENST00000425244 ACIN1Q9UKV3 1341 aaKnown RBP15.76■□□□□ 0.11
CUX1-205ENST00000425244 CARMIL2Q6F5E8 1435 aa15.75■□□□□ 0.11
CUX1-205ENST00000425244 FYCO1Q9BQS8 1478 aa15.75■□□□□ 0.11
CUX1-205ENST00000425244 PRG4Q92954 1404 aaPredicted RBP15.75■□□□□ 0.11
CUX1-205ENST00000425244 TIAM1Q13009 1591 aa15.74■□□□□ 0.11
CUX1-205ENST00000425244 ITGAEP38570 1179 aa15.73■□□□□ 0.11
CUX1-205ENST00000425244 CENPBP07199 599 aaPredicted RBP15.71■□□□□ 0.11
CUX1-205ENST00000425244 PLB1Q6P1J6 1458 aa15.69■□□□□ 0.1
CUX1-205ENST00000425244 LRRC9Q6ZRR7 1453 aa15.69■□□□□ 0.1
CUX1-205ENST00000425244 MTUS2Q5JR59 1369 aa15.69■□□□□ 0.1
CUX1-205ENST00000425244 LRRIQ1Q96JM4 1722 aa15.68■□□□□ 0.1
CUX1-205ENST00000425244 CDK13Q14004 1512 aaKnown RBP15.67■□□□□ 0.1
CUX1-205ENST00000425244 YTHDC1Q96MU7 727 aaKnown RBP15.67■□□□□ 0.1
CUX1-205ENST00000425244 ERCC6L2Q5T890 1561 aa15.66■□□□□ 0.1
CUX1-205ENST00000425244 DHX57Q6P158 1386 aaKnown RBP15.66■□□□□ 0.1
CUX1-205ENST00000425244 CCNB3Q8WWL7 1395 aa15.66■□□□□ 0.1
CUX1-205ENST00000425244 OSCARQ8IYS5 282 aa15.65■□□□□ 0.1
CUX1-205ENST00000425244 CFAP43Q8NDM7 1665 aa15.65■□□□□ 0.1
CUX1-205ENST00000425244 RRBP1Q9P2E9 1410 aaKnown RBP15.65■□□□□ 0.1
CUX1-205ENST00000425244 PTPRGP23470 1445 aa15.64■□□□□ 0.09
CUX1-205ENST00000425244 HECW1Q76N89 1606 aa15.64■□□□□ 0.09
CUX1-205ENST00000425244 MIER1Q8N108 512 aa15.63■□□□□ 0.09
CUX1-205ENST00000425244 EPRSP07814 1512 aaKnown RBP15.63■□□□□ 0.09
CUX1-205ENST00000425244 MAP3K1Q13233 1512 aa15.63■□□□□ 0.09
CUX1-205ENST00000425244 RAPGEF6Q8TEU7 1601 aa15.62■□□□□ 0.09
CUX1-205ENST00000425244 NUP153P49790 1475 aaKnown RBP15.61■□□□□ 0.09
CUX1-205ENST00000425244 CLASP1Q7Z460 1538 aa15.61■□□□□ 0.09
CUX1-205ENST00000425244 PHLDB1Q86UU1 1377 aa15.61■□□□□ 0.09
CUX1-205ENST00000425244 FAM50AQ14320 339 aaKnown RBP15.61■□□□□ 0.09
CUX1-205ENST00000425244 GTF3C3Q9Y5Q9 886 aa15.61■□□□□ 0.09
CUX1-205ENST00000425244 CCDC18Q5T9S5 1454 aa15.59■□□□□ 0.09
CUX1-205ENST00000425244 CLSPNQ9HAW4 1339 aa15.59■□□□□ 0.09
CUX1-205ENST00000425244 SHROOM2Q13796 1616 aa15.58■□□□□ 0.09
CUX1-205ENST00000425244 MAGI3Q5TCQ9 1506 aa15.58■□□□□ 0.08
CUX1-205ENST00000425244 CDK11AQ9UQ88 783 aaPredicted RBP15.55■□□□□ 0.08
CUX1-205ENST00000425244 NCOA2Q15596 1464 aa15.53■□□□□ 0.08
CUX1-205ENST00000425244 EHBP1L1Q8N3D4 1523 aa15.52■□□□□ 0.07
CUX1-205ENST00000425244 ABCA8O94911 1581 aa15.51■□□□□ 0.07
CUX1-205ENST00000425244 UACAQ9BZF9 1416 aa15.51■□□□□ 0.07
CUX1-205ENST00000425244 RAB3GAP2Q9H2M9 1393 aa15.5■□□□□ 0.07
CUX1-205ENST00000425244 PLEKHD1A6NEE1 506 aa15.5■□□□□ 0.07
CUX1-205ENST00000425244 SUPT6HQ7KZ85 1726 aaKnown RBP15.5■□□□□ 0.07
CUX1-205ENST00000425244 ATP10BO94823 1461 aa15.49■□□□□ 0.07
CUX1-205ENST00000425244 KCNH8Q96L42 1107 aa15.46■□□□□ 0.07
CUX1-205ENST00000425244 FGD6Q6ZV73 1430 aa15.45■□□□□ 0.06
CUX1-205ENST00000425244 ZNF777Q9ULD5 760 aaPredicted RBP15.44■□□□□ 0.06
CUX1-205ENST00000425244 MYOM3Q5VTT5 1437 aa15.44■□□□□ 0.06
CUX1-205ENST00000425244 TROQ12816 1431 aaPredicted RBP15.44■□□□□ 0.06
CUX1-205ENST00000425244 SETD5Q9C0A6 1442 aa15.43■□□□□ 0.06
CUX1-205ENST00000425244 ABCC2Q92887 1545 aa15.42■□□□□ 0.06
CUX1-205ENST00000425244 KIF14Q15058 1648 aa15.41■□□□□ 0.06
CUX1-205ENST00000425244 ZNF644Q9H582 1327 aaPredicted RBP15.4■□□□□ 0.06
CUX1-205ENST00000425244 CHIC2Q9UKJ5 165 aa15.39■□□□□ 0.05
CUX1-205ENST00000425244 CFDP1Q9UEE9 299 aaPredicted RBP15.39■□□□□ 0.05
CUX1-205ENST00000425244 CYB5RLQ6IPT4 315 aa15.38■□□□□ 0.05
CUX1-205ENST00000425244 ARHGEF11O15085 1522 aa15.38■□□□□ 0.05
CUX1-205ENST00000425244 MAPKBP1O60336 1514 aa15.37■□□□□ 0.05
CUX1-205ENST00000425244 SIN3AQ96ST3 1273 aa15.36■□□□□ 0.05
CUX1-205ENST00000425244 PTPN23Q9H3S7 1636 aa15.36■□□□□ 0.05
CUX1-205ENST00000425244 ZCCHC11Q5TAX3 1644 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms