RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 GRIN2BQ13224 1484 aa14.17□□□□□ -0.14
USP54-205ENST00000424265 CEP162Q5TB80 1403 aa14.16□□□□□ -0.14
USP54-205ENST00000424265 BIVM-ERCC5R4GMW8 1640 aa14.15□□□□□ -0.14
USP54-205ENST00000424265 ABCA10Q8WWZ4 1543 aa14.14□□□□□ -0.15
USP54-205ENST00000424265 NPM1P06748 294 aaKnown RBP eCLIP14.14□□□□□ -0.15
USP54-205ENST00000424265 RAD54L2Q9Y4B4 1467 aa14.14□□□□□ -0.15
USP54-205ENST00000424265 CARMIL2Q6F5E8 1435 aa14.14□□□□□ -0.15
USP54-205ENST00000424265 FHAD1B1AJZ9 1412 aa14.13□□□□□ -0.15
USP54-205ENST00000424265 P3H3Q8IVL6 736 aa14.12□□□□□ -0.15
USP54-205ENST00000424265 IGF1RP08069 1367 aa14.11□□□□□ -0.15
USP54-205ENST00000424265 URB2Q14146 1524 aaKnown RBP14.1□□□□□ -0.15
USP54-205ENST00000424265 ERICH3Q5RHP9 1530 aa14.09□□□□□ -0.15
USP54-205ENST00000424265 ANO8Q9HCE9 1232 aaPredicted RBP14.08□□□□□ -0.16
USP54-205ENST00000424265 CCER1Q8TC90 406 aaPredicted RBP14.07□□□□□ -0.16
USP54-205ENST00000424265 KIF21BO75037 1637 aa14.06□□□□□ -0.16
USP54-205ENST00000424265 MYT1LQ9UL68 1186 aa14.06□□□□□ -0.16
USP54-205ENST00000424265 FMN1Q68DA7 1419 aa14.03□□□□□ -0.16
USP54-205ENST00000424265 AQRO60306 1485 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP54-205ENST00000424265 WDR62O43379 1518 aa14.02□□□□□ -0.17
USP54-205ENST00000424265 CUL7Q14999 1698 aa14.02□□□□□ -0.17
USP54-205ENST00000424265 WDR97A6NE52 1622 aa14□□□□□ -0.17
USP54-205ENST00000424265 UBE2Q2Q8WVN8 375 aa14□□□□□ -0.17
USP54-205ENST00000424265 MAGI1Q96QZ7 1491 aaPredicted RBP14□□□□□ -0.17
USP54-205ENST00000424265 RUSC2Q8N2Y8 1516 aa14□□□□□ -0.17
USP54-205ENST00000424265 MTUS2Q5JR59 1369 aa13.99□□□□□ -0.17
USP54-205ENST00000424265 KIF21AQ7Z4S6 1674 aa13.98□□□□□ -0.17
USP54-205ENST00000424265 PRXQ9BXM0 1461 aa13.98□□□□□ -0.17
USP54-205ENST00000424265 CLSPNQ9HAW4 1339 aa13.98□□□□□ -0.17
USP54-205ENST00000424265 PODXL2Q9NZ53 605 aa13.97□□□□□ -0.17
USP54-205ENST00000424265 VPS8Q8N3P4 1428 aa13.96□□□□□ -0.17
USP54-205ENST00000424265 PLEKHD1A6NEE1 506 aa13.96□□□□□ -0.18
USP54-205ENST00000424265 OSCARQ8IYS5 282 aa13.96□□□□□ -0.18
USP54-205ENST00000424265 FAM50AQ14320 339 aaKnown RBP13.95□□□□□ -0.18
USP54-205ENST00000424265 SNAPC4Q5SXM2 1469 aa13.94□□□□□ -0.18
USP54-205ENST00000424265 JPH4Q96JJ6 628 aa13.93□□□□□ -0.18
USP54-205ENST00000424265 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
USP54-205ENST00000424265 SYNJ2O15056 1496 aa13.92□□□□□ -0.18
USP54-205ENST00000424265 CCDC136Q96JN2 1154 aa13.91□□□□□ -0.18
USP54-205ENST00000424265 EFCAB5A4FU69 1503 aa13.9□□□□□ -0.18
USP54-205ENST00000424265 GLIPR1L2Q4G1C9 344 aa13.89□□□□□ -0.19
USP54-205ENST00000424265 ITGAEP38570 1179 aa13.89□□□□□ -0.19
USP54-205ENST00000424265 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
USP54-205ENST00000424265 ARID3CA6NKF2 412 aa13.86□□□□□ -0.19
USP54-205ENST00000424265 KIAA0586Q9BVV6 1533 aa13.86□□□□□ -0.19
USP54-205ENST00000424265 ERICH6BQ5W0A0 696 aa13.86□□□□□ -0.19
USP54-205ENST00000424265 GRIN2AQ12879 1464 aa13.83□□□□□ -0.2
USP54-205ENST00000424265 PTPRGP23470 1445 aa13.83□□□□□ -0.2
USP54-205ENST00000424265 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
USP54-205ENST00000424265 FHOD3Q2V2M9 1422 aa13.81□□□□□ -0.2
USP54-205ENST00000424265 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
USP54-205ENST00000424265 SALL2Q9Y467 1007 aaPredicted RBP13.8□□□□□ -0.2
USP54-205ENST00000424265 DEKP35659 375 aaKnown RBP13.79□□□□□ -0.2
USP54-205ENST00000424265 IQGAP2Q13576 1575 aa13.78□□□□□ -0.2
USP54-205ENST00000424265 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.78□□□□□ -0.2
USP54-205ENST00000424265 ZNF777Q9ULD5 760 aaPredicted RBP13.78□□□□□ -0.2
USP54-205ENST00000424265 CCDC18Q5T9S5 1454 aa13.77□□□□□ -0.2
USP54-205ENST00000424265 NEFLP07196 543 aa13.77□□□□□ -0.2
USP54-205ENST00000424265 THOC2Q8NI27 1593 aaKnown RBP13.77□□□□□ -0.21
USP54-205ENST00000424265 TSPY4P0CV99 314 aa13.76□□□□□ -0.21
USP54-205ENST00000424265 TSPY10P0CW01 314 aa13.76□□□□□ -0.21
USP54-205ENST00000424265 ABCA5Q8WWZ7 1642 aa13.76□□□□□ -0.21
USP54-205ENST00000424265 CCNB3Q8WWL7 1395 aa13.76□□□□□ -0.21
USP54-205ENST00000424265 EIF4G3O43432 1585 aaKnown RBP13.75□□□□□ -0.21
USP54-205ENST00000424265 ADAMTS12P58397 1594 aa13.75□□□□□ -0.21
USP54-205ENST00000424265 RTL5Q5HYW3 569 aaPredicted RBP13.75□□□□□ -0.21
USP54-205ENST00000424265 SUPT16HQ9Y5B9 1047 aaKnown RBP13.75□□□□□ -0.21
USP54-205ENST00000424265 PRG4Q92954 1404 aaPredicted RBP13.74□□□□□ -0.21
USP54-205ENST00000424265 TARBP1Q13395 1621 aaKnown RBP13.73□□□□□ -0.21
USP54-205ENST00000424265 ARHGAP35Q9NRY4 1499 aa13.73□□□□□ -0.21
USP54-205ENST00000424265 CASKIN1Q8WXD9 1431 aa13.73□□□□□ -0.21
USP54-205ENST00000424265 CFDP1Q9UEE9 299 aaPredicted RBP13.73□□□□□ -0.21
USP54-205ENST00000424265 FYCO1Q9BQS8 1478 aa13.71□□□□□ -0.21
USP54-205ENST00000424265 TRIM52Q96A61 297 aa13.7□□□□□ -0.22
USP54-205ENST00000424265 KCNH8Q96L42 1107 aa13.7□□□□□ -0.22
USP54-205ENST00000424265 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
USP54-205ENST00000424265 BCANQ96GW7 911 aa13.69□□□□□ -0.22
USP54-205ENST00000424265 HECW1Q76N89 1606 aa13.65□□□□□ -0.22
USP54-205ENST00000424265 RTN4Q9NQC3 1192 aaKnown RBP13.65□□□□□ -0.22
USP54-205ENST00000424265 RSPH4AQ5TD94 716 aa13.64□□□□□ -0.23
USP54-205ENST00000424265 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
USP54-205ENST00000424265 CTTNBP2Q8WZ74 1663 aa13.62□□□□□ -0.23
USP54-205ENST00000424265 NUP160Q12769 1436 aa13.62□□□□□ -0.23
USP54-205ENST00000424265 EFCAB2Q5VUJ9 269 aa13.62□□□□□ -0.23
USP54-205ENST00000424265 ARAP1Q96P48 1450 aa13.61□□□□□ -0.23
USP54-205ENST00000424265 UGGT2Q9NYU1 1516 aa13.61□□□□□ -0.23
USP54-205ENST00000424265 RBM19Q9Y4C8 960 aaKnown RBP13.59□□□□□ -0.23
USP54-205ENST00000424265 ESF1Q9H501 851 aaKnown RBP13.59□□□□□ -0.23
USP54-205ENST00000424265 UACAQ9BZF9 1416 aa13.59□□□□□ -0.23
USP54-205ENST00000424265 MAP3K1Q13233 1512 aa13.58□□□□□ -0.24
USP54-205ENST00000424265 EHBP1L1Q8N3D4 1523 aa13.56□□□□□ -0.24
USP54-205ENST00000424265 KANK4Q5T7N3 995 aaPredicted RBP13.55□□□□□ -0.24
USP54-205ENST00000424265 LRRC9Q6ZRR7 1453 aa13.54□□□□□ -0.24
USP54-205ENST00000424265 CYB5RLQ6IPT4 315 aa13.54□□□□□ -0.24
USP54-205ENST00000424265 NBR1Q14596 966 aa13.53□□□□□ -0.24
USP54-205ENST00000424265 CHIC2Q9UKJ5 165 aa13.52□□□□□ -0.25
USP54-205ENST00000424265 MIER1Q8N108 512 aa13.51□□□□□ -0.25
USP54-205ENST00000424265 TROQ12816 1431 aaPredicted RBP13.51□□□□□ -0.25
USP54-205ENST00000424265 TIAM1Q13009 1591 aa13.5□□□□□ -0.25
USP54-205ENST00000424265 KIAA0556O60303 1618 aa13.49□□□□□ -0.25
USP54-205ENST00000424265 EPRSP07814 1512 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms