RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 CHMP7Q8WUX9 453 aaPredicted RBP14.45□□□□□ -0.1
HPS4-204ENST00000422379 CEP170Q5SW79 1584 aa14.44□□□□□ -0.1
HPS4-204ENST00000422379 RANGAP1P46060 587 aaPredicted RBP14.44□□□□□ -0.1
HPS4-204ENST00000422379 CHD1O14646 1710 aa14.42□□□□□ -0.1
HPS4-204ENST00000422379 NUP160Q12769 1436 aa14.41□□□□□ -0.1
HPS4-204ENST00000422379 CTTNBP2Q8WZ74 1663 aa14.41□□□□□ -0.1
HPS4-204ENST00000422379 CLIP1P30622 1438 aa14.39□□□□□ -0.11
HPS4-204ENST00000422379 ARHGAP35Q9NRY4 1499 aa14.37□□□□□ -0.11
HPS4-204ENST00000422379 KIAA0586Q9BVV6 1533 aa14.36□□□□□ -0.11
HPS4-204ENST00000422379 IQGAP2Q13576 1575 aa14.35□□□□□ -0.11
HPS4-204ENST00000422379 ARAP1Q96P48 1450 aa14.35□□□□□ -0.11
HPS4-204ENST00000422379 P3H3Q8IVL6 736 aa14.31□□□□□ -0.12
HPS4-204ENST00000422379 SAMD9Q5K651 1589 aa14.3□□□□□ -0.12
HPS4-204ENST00000422379 UGGT2Q9NYU1 1516 aa14.3□□□□□ -0.12
HPS4-204ENST00000422379 CLASP1Q7Z460 1538 aa14.29□□□□□ -0.12
HPS4-204ENST00000422379 FHOD3Q2V2M9 1422 aa14.29□□□□□ -0.12
HPS4-204ENST00000422379 DISP1Q96F81 1524 aa14.29□□□□□ -0.12
HPS4-204ENST00000422379 JPH4Q96JJ6 628 aa14.27□□□□□ -0.13
HPS4-204ENST00000422379 EFCAB5A4FU69 1503 aa14.26□□□□□ -0.13
HPS4-204ENST00000422379 VPS8Q8N3P4 1428 aa14.23□□□□□ -0.13
HPS4-204ENST00000422379 SHROOM2Q13796 1616 aa14.23□□□□□ -0.13
HPS4-204ENST00000422379 ERCC6L2Q5T890 1561 aa14.23□□□□□ -0.13
HPS4-204ENST00000422379 KIAA0556O60303 1618 aa14.23□□□□□ -0.13
HPS4-204ENST00000422379 PRG4Q92954 1404 aaPredicted RBP14.21□□□□□ -0.14
HPS4-204ENST00000422379 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
HPS4-204ENST00000422379 PCF11O94913 1555 aaKnown RBP14.16□□□□□ -0.14
HPS4-204ENST00000422379 TTBK1Q5TCY1 1321 aaPredicted RBP14.15□□□□□ -0.14
HPS4-204ENST00000422379 CARMIL2Q6F5E8 1435 aa14.13□□□□□ -0.15
HPS4-204ENST00000422379 PPARGC1BQ86YN6 1023 aaKnown RBP14.13□□□□□ -0.15
HPS4-204ENST00000422379 FMN1Q68DA7 1419 aa14.12□□□□□ -0.15
HPS4-204ENST00000422379 CASKIN1Q8WXD9 1431 aa14.11□□□□□ -0.15
HPS4-204ENST00000422379 PLB1Q6P1J6 1458 aa14.1□□□□□ -0.15
HPS4-204ENST00000422379 FYCO1Q9BQS8 1478 aa14.09□□□□□ -0.15
HPS4-204ENST00000422379 LRRIQ1Q96JM4 1722 aa14.08□□□□□ -0.15
HPS4-204ENST00000422379 PTPRGP23470 1445 aa14.07□□□□□ -0.16
HPS4-204ENST00000422379 NUP153P49790 1475 aaKnown RBP14.06□□□□□ -0.16
HPS4-204ENST00000422379 KANK4Q5T7N3 995 aaPredicted RBP14.05□□□□□ -0.16
HPS4-204ENST00000422379 ATP1B4Q9UN42 357 aaPredicted RBP14.05□□□□□ -0.16
HPS4-204ENST00000422379 ABCA8O94911 1581 aa14.05□□□□□ -0.16
HPS4-204ENST00000422379 ARID3CA6NKF2 412 aa14.05□□□□□ -0.16
HPS4-204ENST00000422379 RAPGEF6Q8TEU7 1601 aa14.04□□□□□ -0.16
HPS4-204ENST00000422379 TIAM1Q13009 1591 aa14.03□□□□□ -0.16
HPS4-204ENST00000422379 CDK13Q14004 1512 aaKnown RBP14.03□□□□□ -0.16
HPS4-204ENST00000422379 ARHGEF11O15085 1522 aa14.02□□□□□ -0.16
HPS4-204ENST00000422379 EPRSP07814 1512 aaKnown RBP14.02□□□□□ -0.17
HPS4-204ENST00000422379 HECW1Q76N89 1606 aa14.01□□□□□ -0.17
HPS4-204ENST00000422379 CFAP43Q8NDM7 1665 aa14□□□□□ -0.17
HPS4-204ENST00000422379 MAGI3Q5TCQ9 1506 aa14□□□□□ -0.17
HPS4-204ENST00000422379 MAP3K1Q13233 1512 aa13.99□□□□□ -0.17
HPS4-204ENST00000422379 UACAQ9BZF9 1416 aa13.99□□□□□ -0.17
HPS4-204ENST00000422379 LRRC9Q6ZRR7 1453 aa13.98□□□□□ -0.17
HPS4-204ENST00000422379 ATP10BO94823 1461 aa13.96□□□□□ -0.17
HPS4-204ENST00000422379 RIMBP3CA6NJZ7 1639 aa13.96□□□□□ -0.17
HPS4-204ENST00000422379 RIMBP3BA6NNM3 1639 aa13.96□□□□□ -0.17
HPS4-204ENST00000422379 RIMBP3Q9UFD9 1639 aa13.96□□□□□ -0.17
HPS4-204ENST00000422379 ABCC2Q92887 1545 aa13.96□□□□□ -0.17
HPS4-204ENST00000422379 APLP2Q06481 763 aa13.96□□□□□ -0.18
HPS4-204ENST00000422379 ADCY10Q96PN6 1610 aa13.95□□□□□ -0.18
HPS4-204ENST00000422379 CCDC18Q5T9S5 1454 aa13.95□□□□□ -0.18
HPS4-204ENST00000422379 UHRF1BP1LA0JNW5 1464 aa13.94□□□□□ -0.18
HPS4-204ENST00000422379 PCGF6Q9BYE7 350 aa13.92□□□□□ -0.18
HPS4-204ENST00000422379 KDM5BQ9UGL1 1544 aa13.89□□□□□ -0.19
HPS4-204ENST00000422379 CYB5RLQ6IPT4 315 aa13.88□□□□□ -0.19
HPS4-204ENST00000422379 MTUS2Q5JR59 1369 aa13.88□□□□□ -0.19
HPS4-204ENST00000422379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.88□□□□□ -0.19
HPS4-204ENST00000422379 HNRNPUL2Q1KMD3 747 aaKnown RBP13.88□□□□□ -0.19
HPS4-204ENST00000422379 ZCCHC11Q5TAX3 1644 aaKnown RBP13.88□□□□□ -0.19
HPS4-204ENST00000422379 PHLDB1Q86UU1 1377 aa13.87□□□□□ -0.19
HPS4-204ENST00000422379 EHBP1L1Q8N3D4 1523 aa13.87□□□□□ -0.19
HPS4-204ENST00000422379 TROQ12816 1431 aaPredicted RBP13.85□□□□□ -0.19
HPS4-204ENST00000422379 KIF14Q15058 1648 aa13.84□□□□□ -0.19
HPS4-204ENST00000422379 NCOA2Q15596 1464 aa13.84□□□□□ -0.19
HPS4-204ENST00000422379 PLPPR3Q6T4P5 718 aa13.82□□□□□ -0.2
HPS4-204ENST00000422379 DNAJC5Q9H3Z4 198 aa13.82□□□□□ -0.2
HPS4-204ENST00000422379 TRIM26Q12899 539 aaPredicted RBP13.82□□□□□ -0.2
HPS4-204ENST00000422379 SUPT6HQ7KZ85 1726 aaKnown RBP13.8□□□□□ -0.2
HPS4-204ENST00000422379 PLEKHD1A6NEE1 506 aa13.8□□□□□ -0.2
HPS4-204ENST00000422379 CDK11AQ9UQ88 783 aaPredicted RBP13.8□□□□□ -0.2
HPS4-204ENST00000422379 ABCC10Q5T3U5 1492 aa13.79□□□□□ -0.2
HPS4-204ENST00000422379 RRBP1Q9P2E9 1410 aaKnown RBP13.78□□□□□ -0.2
HPS4-204ENST00000422379 ASXL2Q76L83 1435 aa13.77□□□□□ -0.2
HPS4-204ENST00000422379 WDR7Q9Y4E6 1490 aa13.76□□□□□ -0.21
HPS4-204ENST00000422379 MYOM3Q5VTT5 1437 aa13.75□□□□□ -0.21
HPS4-204ENST00000422379 KCNH8Q96L42 1107 aa13.75□□□□□ -0.21
HPS4-204ENST00000422379 FGD6Q6ZV73 1430 aa13.75□□□□□ -0.21
HPS4-204ENST00000422379 TTC37Q6PGP7 1564 aa13.75□□□□□ -0.21
HPS4-204ENST00000422379 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.74□□□□□ -0.21
HPS4-204ENST00000422379 GPATCH8Q9UKJ3 1502 aaKnown RBP13.74□□□□□ -0.21
HPS4-204ENST00000422379 CCNB3Q8WWL7 1395 aa13.73□□□□□ -0.21
HPS4-204ENST00000422379 ZNF644Q9H582 1327 aaPredicted RBP13.71□□□□□ -0.21
HPS4-204ENST00000422379 MAPKBP1O60336 1514 aa13.71□□□□□ -0.22
HPS4-204ENST00000422379 NPM1P06748 294 aaKnown RBP eCLIP13.7□□□□□ -0.22
HPS4-204ENST00000422379 CDC42BPAQ5VT25 1732 aa13.7□□□□□ -0.22
HPS4-204ENST00000422379 PTPN23Q9H3S7 1636 aa13.68□□□□□ -0.22
HPS4-204ENST00000422379 HRCP23327 699 aa13.68□□□□□ -0.22
HPS4-204ENST00000422379 TCOF1Q13428 1488 aaKnown RBP13.67□□□□□ -0.22
HPS4-204ENST00000422379 MIA2Q96PC5 1412 aa13.67□□□□□ -0.22
HPS4-204ENST00000422379 FAM50AQ14320 339 aaKnown RBP13.67□□□□□ -0.22
HPS4-204ENST00000422379 CDC42BPBQ9Y5S2 1711 aa13.66□□□□□ -0.22
HPS4-204ENST00000422379 PREX2Q70Z35 1606 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms