RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 GRIN2AQ12879 1464 aa27.34■■□□□ 1.97
CCDC28B-202ENST00000421922 FBLN2P98095 1184 aa27.32■■□□□ 1.96
CCDC28B-202ENST00000421922 CLIP1P30622 1438 aa27.28■■□□□ 1.96
CCDC28B-202ENST00000421922 RANGAP1P46060 587 aaPredicted RBP27.27■■□□□ 1.96
CCDC28B-202ENST00000421922 CHD1O14646 1710 aa27.26■■□□□ 1.95
CCDC28B-202ENST00000421922 RIMBP3CA6NJZ7 1639 aa27.24■■□□□ 1.95
CCDC28B-202ENST00000421922 RIMBP3BA6NNM3 1639 aa27.24■■□□□ 1.95
CCDC28B-202ENST00000421922 RIMBP3Q9UFD9 1639 aa27.24■■□□□ 1.95
CCDC28B-202ENST00000421922 IQGAP2Q13576 1575 aa27.2■■□□□ 1.94
CCDC28B-202ENST00000421922 CEP170Q5SW79 1584 aa27.15■■□□□ 1.94
CCDC28B-202ENST00000421922 KIAA0586Q9BVV6 1533 aa27.13■■□□□ 1.93
CCDC28B-202ENST00000421922 EFCAB5A4FU69 1503 aa27.12■■□□□ 1.93
CCDC28B-202ENST00000421922 NUP160Q12769 1436 aa27.12■■□□□ 1.93
CCDC28B-202ENST00000421922 ARHGEF11O15085 1522 aa27.09■■□□□ 1.93
CCDC28B-202ENST00000421922 ARHGAP35Q9NRY4 1499 aa27.07■■□□□ 1.92
CCDC28B-202ENST00000421922 SAMD9Q5K651 1589 aa27.02■■□□□ 1.92
CCDC28B-202ENST00000421922 ARAP1Q96P48 1450 aa27.01■■□□□ 1.91
CCDC28B-202ENST00000421922 UGGT2Q9NYU1 1516 aa27■■□□□ 1.91
CCDC28B-202ENST00000421922 VPS8Q8N3P4 1428 aa26.98■■□□□ 1.91
CCDC28B-202ENST00000421922 P3H3Q8IVL6 736 aa26.94■■□□□ 1.9
CCDC28B-202ENST00000421922 FHOD3Q2V2M9 1422 aa26.93■■□□□ 1.9
CCDC28B-202ENST00000421922 KIAA0556O60303 1618 aa26.9■■□□□ 1.9
CCDC28B-202ENST00000421922 CYB5RLQ6IPT4 315 aa26.9■■□□□ 1.9
CCDC28B-202ENST00000421922 CARMIL2Q6F5E8 1435 aa26.89■■□□□ 1.9
CCDC28B-202ENST00000421922 JPH4Q96JJ6 628 aa26.88■■□□□ 1.89
CCDC28B-202ENST00000421922 CLASP1Q7Z460 1538 aa26.88■■□□□ 1.89
CCDC28B-202ENST00000421922 FMN1Q68DA7 1419 aa26.86■■□□□ 1.89
CCDC28B-202ENST00000421922 DISP1Q96F81 1524 aa26.84■■□□□ 1.89
CCDC28B-202ENST00000421922 SHROOM2Q13796 1616 aa26.84■■□□□ 1.89
CCDC28B-202ENST00000421922 APLP2Q06481 763 aa26.82■■□□□ 1.88
CCDC28B-202ENST00000421922 PRG4Q92954 1404 aaPredicted RBP26.79■■□□□ 1.88
CCDC28B-202ENST00000421922 PCF11O94913 1555 aaKnown RBP26.77■■□□□ 1.88
CCDC28B-202ENST00000421922 FYCO1Q9BQS8 1478 aa26.74■■□□□ 1.87
CCDC28B-202ENST00000421922 TRHP20396 242 aaPredicted RBP26.73■■□□□ 1.87
CCDC28B-202ENST00000421922 TTBK1Q5TCY1 1321 aaPredicted RBP26.71■■□□□ 1.87
CCDC28B-202ENST00000421922 CASKIN1Q8WXD9 1431 aa26.71■■□□□ 1.87
CCDC28B-202ENST00000421922 ATP1B4Q9UN42 357 aaPredicted RBP26.7■■□□□ 1.86
CCDC28B-202ENST00000421922 HECW1Q76N89 1606 aa26.66■■□□□ 1.86
CCDC28B-202ENST00000421922 RAPGEF6Q8TEU7 1601 aa26.62■■□□□ 1.85
CCDC28B-202ENST00000421922 CFAP43Q8NDM7 1665 aa26.61■■□□□ 1.85
CCDC28B-202ENST00000421922 ERCC6L2Q5T890 1561 aa26.6■■□□□ 1.85
CCDC28B-202ENST00000421922 TIAM1Q13009 1591 aa26.59■■□□□ 1.85
CCDC28B-202ENST00000421922 PTPRGP23470 1445 aa26.59■■□□□ 1.85
CCDC28B-202ENST00000421922 PPARGC1BQ86YN6 1023 aaKnown RBP26.57■■□□□ 1.84
CCDC28B-202ENST00000421922 MAP3K1Q13233 1512 aa26.57■■□□□ 1.84
CCDC28B-202ENST00000421922 CCDC18Q5T9S5 1454 aa26.56■■□□□ 1.84
CCDC28B-202ENST00000421922 LRRIQ1Q96JM4 1722 aa26.52■■□□□ 1.84
CCDC28B-202ENST00000421922 PLB1Q6P1J6 1458 aa26.51■■□□□ 1.83
CCDC28B-202ENST00000421922 ABCA8O94911 1581 aa26.5■■□□□ 1.83
CCDC28B-202ENST00000421922 EPRSP07814 1512 aaKnown RBP26.47■■□□□ 1.83
CCDC28B-202ENST00000421922 NUP153P49790 1475 aaKnown RBP26.45■■□□□ 1.82
CCDC28B-202ENST00000421922 UACAQ9BZF9 1416 aa26.43■■□□□ 1.82
CCDC28B-202ENST00000421922 LRRC9Q6ZRR7 1453 aa26.43■■□□□ 1.82
CCDC28B-202ENST00000421922 CDK13Q14004 1512 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-202ENST00000421922 ARID3CA6NKF2 412 aa26.4■■□□□ 1.82
CCDC28B-202ENST00000421922 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.4■■□□□ 1.82
CCDC28B-202ENST00000421922 HNRNPUL2Q1KMD3 747 aaKnown RBP26.4■■□□□ 1.82
CCDC28B-202ENST00000421922 KANK4Q5T7N3 995 aaPredicted RBP26.39■■□□□ 1.82
CCDC28B-202ENST00000421922 MTUS2Q5JR59 1369 aa26.39■■□□□ 1.82
CCDC28B-202ENST00000421922 ABCC2Q92887 1545 aa26.39■■□□□ 1.82
CCDC28B-202ENST00000421922 EHBP1L1Q8N3D4 1523 aa26.38■■□□□ 1.81
CCDC28B-202ENST00000421922 CDK11AQ9UQ88 783 aaPredicted RBP26.35■■□□□ 1.81
CCDC28B-202ENST00000421922 TRIM26Q12899 539 aaPredicted RBP26.34■■□□□ 1.81
CCDC28B-202ENST00000421922 UHRF1BP1LA0JNW5 1464 aa26.32■■□□□ 1.8
CCDC28B-202ENST00000421922 AEBP2Q6ZN18 517 aaPredicted RBP26.31■■□□□ 1.8
CCDC28B-202ENST00000421922 SUPT6HQ7KZ85 1726 aaKnown RBP26.31■■□□□ 1.8
CCDC28B-202ENST00000421922 ATP10BO94823 1461 aa26.27■■□□□ 1.8
CCDC28B-202ENST00000421922 MAGI3Q5TCQ9 1506 aa26.25■■□□□ 1.79
CCDC28B-202ENST00000421922 ADCY10Q96PN6 1610 aa26.25■■□□□ 1.79
CCDC28B-202ENST00000421922 ZCCHC11Q5TAX3 1644 aaKnown RBP26.23■■□□□ 1.79
CCDC28B-202ENST00000421922 TROQ12816 1431 aaPredicted RBP26.21■■□□□ 1.79
CCDC28B-202ENST00000421922 PLEKHD1A6NEE1 506 aa26.21■■□□□ 1.79
CCDC28B-202ENST00000421922 PCGF6Q9BYE7 350 aa26.2■■□□□ 1.78
CCDC28B-202ENST00000421922 KDM5BQ9UGL1 1544 aa26.19■■□□□ 1.78
CCDC28B-202ENST00000421922 NCOA2Q15596 1464 aa26.18■■□□□ 1.78
CCDC28B-202ENST00000421922 KIF14Q15058 1648 aa26.16■■□□□ 1.78
CCDC28B-202ENST00000421922 NPM1P06748 294 aaKnown RBP eCLIP26.14■■□□□ 1.77
CCDC28B-202ENST00000421922 PHLDB1Q86UU1 1377 aa26.11■■□□□ 1.77
CCDC28B-202ENST00000421922 RRBP1Q9P2E9 1410 aaKnown RBP26.07■■□□□ 1.76
CCDC28B-202ENST00000421922 MYOM3Q5VTT5 1437 aa26.07■■□□□ 1.76
CCDC28B-202ENST00000421922 ITSN2Q9NZM3 1697 aa26.06■■□□□ 1.76
CCDC28B-202ENST00000421922 CCNB3Q8WWL7 1395 aa26.05■■□□□ 1.76
CCDC28B-202ENST00000421922 FGD6Q6ZV73 1430 aa26.02■■□□□ 1.76
CCDC28B-202ENST00000421922 WDR7Q9Y4E6 1490 aa26■■□□□ 1.75
CCDC28B-202ENST00000421922 FAM50AQ14320 339 aaKnown RBP25.97■■□□□ 1.75
CCDC28B-202ENST00000421922 ASXL2Q76L83 1435 aa25.96■■□□□ 1.75
CCDC28B-202ENST00000421922 PTPN23Q9H3S7 1636 aa25.96■■□□□ 1.75
CCDC28B-202ENST00000421922 KCNH8Q96L42 1107 aa25.96■■□□□ 1.75
CCDC28B-202ENST00000421922 ABCC10Q5T3U5 1492 aa25.95■■□□□ 1.74
CCDC28B-202ENST00000421922 MIA2Q96PC5 1412 aa25.95■■□□□ 1.74
CCDC28B-202ENST00000421922 CDC42BPAQ5VT25 1732 aa25.94■■□□□ 1.74
CCDC28B-202ENST00000421922 MYO5CQ9NQX4 1742 aa25.92■■□□□ 1.74
CCDC28B-202ENST00000421922 TTC37Q6PGP7 1564 aa25.92■■□□□ 1.74
CCDC28B-202ENST00000421922 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.91■■□□□ 1.741e-6■■■■■ 42.9
CCDC28B-202ENST00000421922 GPATCH8Q9UKJ3 1502 aaKnown RBP25.9■■□□□ 1.74
CCDC28B-202ENST00000421922 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.89■■□□□ 1.74
CCDC28B-202ENST00000421922 PREX2Q70Z35 1606 aa25.89■■□□□ 1.74
CCDC28B-202ENST00000421922 CFDP1Q9UEE9 299 aaPredicted RBP25.88■■□□□ 1.73
CCDC28B-202ENST00000421922 MAPKBP1O60336 1514 aa25.88■■□□□ 1.73
CCDC28B-202ENST00000421922 KIF13AQ9H1H9 1805 aa25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms