RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
DDX56-203ENST00000421223 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
DDX56-203ENST00000421223 YTHDC1Q96MU7 727 aaKnown RBP16.08■□□□□ 0.16
DDX56-203ENST00000421223 FHAD1B1AJZ9 1412 aa16.08■□□□□ 0.16
DDX56-203ENST00000421223 DHX57Q6P158 1386 aaKnown RBP16.06■□□□□ 0.16
DDX56-203ENST00000421223 AQRO60306 1485 aaKnown RBP eCLIP16.06■□□□□ 0.162e-7■■■■□ 26.6
DDX56-203ENST00000421223 PHLDB1Q86UU1 1377 aa16.06■□□□□ 0.16
DDX56-203ENST00000421223 MYT1Q01538 1121 aa16.05■□□□□ 0.16
DDX56-203ENST00000421223 RRBP1Q9P2E9 1410 aaKnown RBP16.05■□□□□ 0.16
DDX56-203ENST00000421223 LRRC9Q6ZRR7 1453 aa16.03■□□□□ 0.16
DDX56-203ENST00000421223 KIF21AQ7Z4S6 1674 aa16.03■□□□□ 0.16
DDX56-203ENST00000421223 NEUROD1Q13562 356 aa16.03■□□□□ 0.16
DDX56-203ENST00000421223 TIAM1Q13009 1591 aa16.02■□□□□ 0.16
DDX56-203ENST00000421223 FBLN2P98095 1184 aa16.02■□□□□ 0.15
DDX56-203ENST00000421223 MTUS2Q5JR59 1369 aa16■□□□□ 0.15
DDX56-203ENST00000421223 RAB3GAP2Q9H2M9 1393 aa15.99■□□□□ 0.15
DDX56-203ENST00000421223 PCF11O94913 1555 aaKnown RBP15.99■□□□□ 0.15
DDX56-203ENST00000421223 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
DDX56-203ENST00000421223 MIER1Q8N108 512 aa15.98■□□□□ 0.15
DDX56-203ENST00000421223 CUL7Q14999 1698 aa15.95■□□□□ 0.14
DDX56-203ENST00000421223 SIN3AQ96ST3 1273 aa15.94■□□□□ 0.14
DDX56-203ENST00000421223 FMN1Q68DA7 1419 aa15.94■□□□□ 0.14
DDX56-203ENST00000421223 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
DDX56-203ENST00000421223 ERCC6Q03468 1493 aa15.92■□□□□ 0.14
DDX56-203ENST00000421223 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
DDX56-203ENST00000421223 CHIC2Q9UKJ5 165 aa15.91■□□□□ 0.14
DDX56-203ENST00000421223 SETD5Q9C0A6 1442 aa15.9■□□□□ 0.14
DDX56-203ENST00000421223 MRC2Q9UBG0 1479 aa15.9■□□□□ 0.14
DDX56-203ENST00000421223 CLSPNQ9HAW4 1339 aa15.9■□□□□ 0.14
DDX56-203ENST00000421223 ZNF608Q9ULD9 1512 aaPredicted RBP15.9■□□□□ 0.14
DDX56-203ENST00000421223 ABCA5Q8WWZ7 1642 aa15.89■□□□□ 0.13
DDX56-203ENST00000421223 FYCO1Q9BQS8 1478 aa15.89■□□□□ 0.13
DDX56-203ENST00000421223 ACIN1Q9UKV3 1341 aaKnown RBP15.89■□□□□ 0.13
DDX56-203ENST00000421223 EFCAB5A4FU69 1503 aa15.89■□□□□ 0.13
DDX56-203ENST00000421223 MAP3K1Q13233 1512 aa15.87■□□□□ 0.13
DDX56-203ENST00000421223 CHMP7Q8WUX9 453 aaPredicted RBP15.87■□□□□ 0.13
DDX56-203ENST00000421223 CTTNBP2Q8WZ74 1663 aa15.87■□□□□ 0.13
DDX56-203ENST00000421223 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
DDX56-203ENST00000421223 TARBP1Q13395 1621 aaKnown RBP15.85■□□□□ 0.13
DDX56-203ENST00000421223 RRP7BPQ9NSQ0 103 aa15.84■□□□□ 0.13
DDX56-203ENST00000421223 HIRIP3Q9BW71 556 aaPredicted RBP15.83■□□□□ 0.12
DDX56-203ENST00000421223 GRIN2BQ13224 1484 aa15.82■□□□□ 0.12
DDX56-203ENST00000421223 SNAPC4Q5SXM2 1469 aa15.81■□□□□ 0.12
DDX56-203ENST00000421223 GTF3C3Q9Y5Q9 886 aa15.8■□□□□ 0.12
DDX56-203ENST00000421223 FGD6Q6ZV73 1430 aa15.8■□□□□ 0.12
DDX56-203ENST00000421223 TRIM52Q96A61 297 aa15.79■□□□□ 0.12
DDX56-203ENST00000421223 CFAP43Q8NDM7 1665 aa15.79■□□□□ 0.12
DDX56-203ENST00000421223 NCOA2Q15596 1464 aa15.77■□□□□ 0.12
DDX56-203ENST00000421223 IFT140Q96RY7 1462 aa15.76■□□□□ 0.11
DDX56-203ENST00000421223 PBRM1Q86U86 1689 aa15.73■□□□□ 0.11
DDX56-203ENST00000421223 IQGAP2Q13576 1575 aa15.73■□□□□ 0.11
DDX56-203ENST00000421223 SAMD9Q5K651 1589 aa15.73■□□□□ 0.11
DDX56-203ENST00000421223 PTPRKQ15262 1439 aa15.73■□□□□ 0.11
DDX56-203ENST00000421223 CDK13Q14004 1512 aaKnown RBP15.72■□□□□ 0.11
DDX56-203ENST00000421223 MYOM3Q5VTT5 1437 aa15.72■□□□□ 0.11
DDX56-203ENST00000421223 ZNF777Q9ULD5 760 aaPredicted RBP15.72■□□□□ 0.11
DDX56-203ENST00000421223 MAPKBP1O60336 1514 aa15.72■□□□□ 0.11
DDX56-203ENST00000421223 ADAMTS12P58397 1594 aa15.71■□□□□ 0.11
DDX56-203ENST00000421223 PRKCSHP14314 528 aaPredicted RBP15.71■□□□□ 0.11
DDX56-203ENST00000421223 DDX10Q13206 875 aaKnown RBP15.7■□□□□ 0.1
DDX56-203ENST00000421223 ZNF644Q9H582 1327 aaPredicted RBP15.68■□□□□ 0.1
DDX56-203ENST00000421223 JPH4Q96JJ6 628 aa15.67■□□□□ 0.1
DDX56-203ENST00000421223 EPRSP07814 1512 aaKnown RBP15.67■□□□□ 0.1
DDX56-203ENST00000421223 MAGI3Q5TCQ9 1506 aa15.67■□□□□ 0.1
DDX56-203ENST00000421223 CDK11AQ9UQ88 783 aaPredicted RBP15.67■□□□□ 0.1
DDX56-203ENST00000421223 WDR62O43379 1518 aa15.66■□□□□ 0.1
DDX56-203ENST00000421223 CCDC18Q5T9S5 1454 aa15.66■□□□□ 0.1
DDX56-203ENST00000421223 FOXD1Q16676 465 aa15.66■□□□□ 0.1
DDX56-203ENST00000421223 TONSLQ96HA7 1378 aa15.66■□□□□ 0.1
DDX56-203ENST00000421223 LRRIQ1Q96JM4 1722 aa15.65■□□□□ 0.1
DDX56-203ENST00000421223 GRIN2AQ12879 1464 aa15.64■□□□□ 0.09
DDX56-203ENST00000421223 KIAA0586Q9BVV6 1533 aa15.64■□□□□ 0.09
DDX56-203ENST00000421223 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.64■□□□□ 0.09
DDX56-203ENST00000421223 EHBP1L1Q8N3D4 1523 aa15.63■□□□□ 0.09
DDX56-203ENST00000421223 PPP1R15AO75807 674 aaPredicted RBP15.63■□□□□ 0.09
DDX56-203ENST00000421223 SUPT6HQ7KZ85 1726 aaKnown RBP15.63■□□□□ 0.09
DDX56-203ENST00000421223 EIF4G3O43432 1585 aaKnown RBP15.62■□□□□ 0.09
DDX56-203ENST00000421223 NAIPQ13075 1403 aa15.61■□□□□ 0.09
DDX56-203ENST00000421223 SLC24A1O60721 1099 aa15.61■□□□□ 0.09
DDX56-203ENST00000421223 THOC2Q8NI27 1593 aaKnown RBP15.61■□□□□ 0.09
DDX56-203ENST00000421223 HECW1Q76N89 1606 aa15.61■□□□□ 0.09
DDX56-203ENST00000421223 KCNH8Q96L42 1107 aa15.6■□□□□ 0.09
DDX56-203ENST00000421223 HFM1A2PYH4 1435 aa15.6■□□□□ 0.09
DDX56-203ENST00000421223 CFDP1Q9UEE9 299 aaPredicted RBP15.6■□□□□ 0.09
DDX56-203ENST00000421223 DISP1Q96F81 1524 aa15.59■□□□□ 0.09
DDX56-203ENST00000421223 PTPN23Q9H3S7 1636 aa15.59■□□□□ 0.09
DDX56-203ENST00000421223 UGGT2Q9NYU1 1516 aa15.58■□□□□ 0.08
DDX56-203ENST00000421223 PLB1Q6P1J6 1458 aa15.57■□□□□ 0.08
DDX56-203ENST00000421223 PRG4Q92954 1404 aaPredicted RBP15.57■□□□□ 0.08
DDX56-203ENST00000421223 UACAQ9BZF9 1416 aa15.56■□□□□ 0.08
DDX56-203ENST00000421223 MPHOSPH9Q99550 1183 aa15.55■□□□□ 0.08
DDX56-203ENST00000421223 SYNJ2O15056 1496 aa15.54■□□□□ 0.08
DDX56-203ENST00000421223 PLEKHD1A6NEE1 506 aa15.54■□□□□ 0.08
DDX56-203ENST00000421223 NUP153P49790 1475 aaKnown RBP15.54■□□□□ 0.08
DDX56-203ENST00000421223 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
DDX56-203ENST00000421223 KIAA0556O60303 1618 aa15.53■□□□□ 0.08
DDX56-203ENST00000421223 CARMIL2Q6F5E8 1435 aa15.53■□□□□ 0.08
DDX56-203ENST00000421223 MAGI1Q96QZ7 1491 aaPredicted RBP15.53■□□□□ 0.08
DDX56-203ENST00000421223 SLC4A1APQ9BWU0 796 aaKnown RBP15.52■□□□□ 0.07
DDX56-203ENST00000421223 CEP170Q5SW79 1584 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms