RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 RRBP1Q9P2E9 1410 aaKnown RBP11.32□□□□□ -0.6
HMGXB4-202ENST00000418170 LAMC3Q9Y6N6 1575 aa11.31□□□□□ -0.6
HMGXB4-202ENST00000418170 CCER2I3L3R5 266 aa11.3□□□□□ -0.6
HMGXB4-202ENST00000418170 RAPGEF2Q9Y4G8 1499 aa11.3□□□□□ -0.6
HMGXB4-202ENST00000418170 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
HMGXB4-202ENST00000418170 DEKP35659 375 aaKnown RBP11.28□□□□□ -0.6
HMGXB4-202ENST00000418170 PRXQ9BXM0 1461 aa11.28□□□□□ -0.6
HMGXB4-202ENST00000418170 MAPKBP1O60336 1514 aa11.28□□□□□ -0.6
HMGXB4-202ENST00000418170 CDK11AQ9UQ88 783 aaPredicted RBP11.28□□□□□ -0.6
HMGXB4-202ENST00000418170 PPP1R15AO75807 674 aaPredicted RBP11.27□□□□□ -0.6
HMGXB4-202ENST00000418170 TRIM52Q96A61 297 aa11.27□□□□□ -0.6
HMGXB4-202ENST00000418170 DNMBPQ6XZF7 1577 aa11.26□□□□□ -0.61
HMGXB4-202ENST00000418170 URB2Q14146 1524 aaKnown RBP11.26□□□□□ -0.61
HMGXB4-202ENST00000418170 FANCD2Q9BXW9 1451 aa11.25□□□□□ -0.61
HMGXB4-202ENST00000418170 ERICH3Q5RHP9 1530 aa11.24□□□□□ -0.61
HMGXB4-202ENST00000418170 TARBP1Q13395 1621 aaKnown RBP11.24□□□□□ -0.61
HMGXB4-202ENST00000418170 ARAP1Q96P48 1450 aa11.23□□□□□ -0.61
HMGXB4-202ENST00000418170 KANK4Q5T7N3 995 aaPredicted RBP11.23□□□□□ -0.61
HMGXB4-202ENST00000418170 ABCA5Q8WWZ7 1642 aa11.23□□□□□ -0.61
HMGXB4-202ENST00000418170 FGD5Q6ZNL6 1462 aa11.22□□□□□ -0.61
HMGXB4-202ENST00000418170 CCNB3Q8WWL7 1395 aa11.22□□□□□ -0.61
HMGXB4-202ENST00000418170 TOPBP1Q92547 1522 aa11.22□□□□□ -0.61
HMGXB4-202ENST00000418170 ANP32CO43423 234 aa11.21□□□□□ -0.61
HMGXB4-202ENST00000418170 RAB3GAP2Q9H2M9 1393 aa11.2□□□□□ -0.62
HMGXB4-202ENST00000418170 RANGAP1P46060 587 aaPredicted RBP11.19□□□□□ -0.62
HMGXB4-202ENST00000418170 POLA1P09884 1462 aaPredicted RBP11.19□□□□□ -0.62
HMGXB4-202ENST00000418170 ERICH6BQ5W0A0 696 aa11.18□□□□□ -0.62
HMGXB4-202ENST00000418170 ANO8Q9HCE9 1232 aaPredicted RBP11.17□□□□□ -0.62
HMGXB4-202ENST00000418170 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
HMGXB4-202ENST00000418170 TIMELESSQ9UNS1 1208 aa11.16□□□□□ -0.62
HMGXB4-202ENST00000418170 THOC2Q8NI27 1593 aaKnown RBP11.14□□□□□ -0.63
HMGXB4-202ENST00000418170 RAD54L2Q9Y4B4 1467 aa11.14□□□□□ -0.63
HMGXB4-202ENST00000418170 IRX6P78412 446 aaPredicted RBP11.14□□□□□ -0.63
HMGXB4-202ENST00000418170 PPP4R2Q9NY27 417 aa11.14□□□□□ -0.63
HMGXB4-202ENST00000418170 LRRIQ1Q96JM4 1722 aa11.13□□□□□ -0.63
HMGXB4-202ENST00000418170 NOP58Q9Y2X3 529 aaKnown RBP11.13□□□□□ -0.63
HMGXB4-202ENST00000418170 SETD5Q9C0A6 1442 aa11.13□□□□□ -0.63
HMGXB4-202ENST00000418170 PBRM1Q86U86 1689 aa11.12□□□□□ -0.63
HMGXB4-202ENST00000418170 SIN3AQ96ST3 1273 aa11.11□□□□□ -0.63
HMGXB4-202ENST00000418170 IGF1RP08069 1367 aa11.11□□□□□ -0.63
HMGXB4-202ENST00000418170 CTTNBP2Q8WZ74 1663 aa11.11□□□□□ -0.63
HMGXB4-202ENST00000418170 HNRNPUQ00839 825 aaKnown RBP eCLIP11.11□□□□□ -0.63
HMGXB4-202ENST00000418170 NBR1Q14596 966 aa11.09□□□□□ -0.63
HMGXB4-202ENST00000418170 HIRIP3Q9BW71 556 aaPredicted RBP11.09□□□□□ -0.63
HMGXB4-202ENST00000418170 WDR62O43379 1518 aa11.09□□□□□ -0.63
HMGXB4-202ENST00000418170 SALL2Q9Y467 1007 aaPredicted RBP11.08□□□□□ -0.64
HMGXB4-202ENST00000418170 CUL7Q14999 1698 aa11.08□□□□□ -0.64
HMGXB4-202ENST00000418170 PAK3O75914 559 aaPredicted RBP11.08□□□□□ -0.64
HMGXB4-202ENST00000418170 KIF27Q86VH2 1401 aa11.05□□□□□ -0.64
HMGXB4-202ENST00000418170 MAP3K1Q13233 1512 aa11.04□□□□□ -0.64
HMGXB4-202ENST00000418170 ARHGAP35Q9NRY4 1499 aa11.04□□□□□ -0.64
HMGXB4-202ENST00000418170 TIAM1Q13009 1591 aa11.03□□□□□ -0.64
HMGXB4-202ENST00000418170 B4GALNT3Q6L9W6 998 aa11.03□□□□□ -0.64
HMGXB4-202ENST00000418170 RTL5Q5HYW3 569 aaPredicted RBP11.02□□□□□ -0.65
HMGXB4-202ENST00000418170 SAMD9Q5K651 1589 aa11.01□□□□□ -0.65
HMGXB4-202ENST00000418170 IL27Q8NEV9 243 aa11□□□□□ -0.65
HMGXB4-202ENST00000418170 IPO9Q96P70 1041 aaKnown RBP11□□□□□ -0.65
HMGXB4-202ENST00000418170 ADAMTS12P58397 1594 aa10.98□□□□□ -0.65
HMGXB4-202ENST00000418170 ANP32AP39687 249 aaKnown RBP10.98□□□□□ -0.65
HMGXB4-202ENST00000418170 TONSLQ96HA7 1378 aa10.98□□□□□ -0.65
HMGXB4-202ENST00000418170 LRRC9Q6ZRR7 1453 aa10.98□□□□□ -0.65
HMGXB4-202ENST00000418170 PDS5BQ9NTI5 1447 aa10.98□□□□□ -0.65
HMGXB4-202ENST00000418170 PHLDB1Q86UU1 1377 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 MRC2Q9UBG0 1479 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 CFAP43Q8NDM7 1665 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 FHAD1B1AJZ9 1412 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 UBE2Q2Q8WVN8 375 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 CCDC136Q96JN2 1154 aa10.97□□□□□ -0.65
HMGXB4-202ENST00000418170 EIF4G3O43432 1585 aaKnown RBP10.96□□□□□ -0.65
HMGXB4-202ENST00000418170 ZBTB47Q9UFB7 747 aaPredicted RBP10.96□□□□□ -0.66
HMGXB4-202ENST00000418170 WASHC2AQ641Q2 1341 aa10.96□□□□□ -0.66
HMGXB4-202ENST00000418170 ZBED9Q6R2W3 1325 aa10.95□□□□□ -0.66
HMGXB4-202ENST00000418170 ZNF608Q9ULD9 1512 aaPredicted RBP10.95□□□□□ -0.66
HMGXB4-202ENST00000418170 FAM50AQ14320 339 aaKnown RBP10.93□□□□□ -0.66
HMGXB4-202ENST00000418170 NCOA2Q15596 1464 aa10.93□□□□□ -0.66
HMGXB4-202ENST00000418170 PCF11O94913 1555 aaKnown RBP10.92□□□□□ -0.66
HMGXB4-202ENST00000418170 RTN4Q9NQC3 1192 aaKnown RBP10.92□□□□□ -0.66
HMGXB4-202ENST00000418170 KDM5BQ9UGL1 1544 aa10.92□□□□□ -0.66
HMGXB4-202ENST00000418170 CARMIL1Q5VZK9 1371 aa10.91□□□□□ -0.66
HMGXB4-202ENST00000418170 GAPVD1Q14C86 1478 aa10.91□□□□□ -0.66
HMGXB4-202ENST00000418170 CCDC184Q52MB2 194 aa10.91□□□□□ -0.66
HMGXB4-202ENST00000418170 C11orf95C9JLR9 678 aaPredicted RBP10.91□□□□□ -0.66
HMGXB4-202ENST00000418170 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.9□□□□□ -0.66
HMGXB4-202ENST00000418170 CNTLNQ9NXG0 1405 aa10.9□□□□□ -0.66
HMGXB4-202ENST00000418170 SNAPC4Q5SXM2 1469 aa10.9□□□□□ -0.66
HMGXB4-202ENST00000418170 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.9□□□□□ -0.66
HMGXB4-202ENST00000418170 USP35Q9P2H5 1018 aa10.9□□□□□ -0.66
HMGXB4-202ENST00000418170 WASHC2CQ9Y4E1 1318 aa10.88□□□□□ -0.67
HMGXB4-202ENST00000418170 UACAQ9BZF9 1416 aa10.88□□□□□ -0.67
HMGXB4-202ENST00000418170 CCDC18Q5T9S5 1454 aa10.88□□□□□ -0.67
HMGXB4-202ENST00000418170 TDRD9Q8NDG6 1382 aaKnown RBP10.87□□□□□ -0.67
HMGXB4-202ENST00000418170 SMG6Q86US8 1419 aaKnown RBP10.87□□□□□ -0.67
HMGXB4-202ENST00000418170 FAM9BQ8IZU0 186 aa10.87□□□□□ -0.67
HMGXB4-202ENST00000418170 RNF123Q5XPI4 1314 aa10.87□□□□□ -0.67
HMGXB4-202ENST00000418170 PRKRIP1Q9H875 184 aaPredicted RBP10.86□□□□□ -0.67
HMGXB4-202ENST00000418170 AQRO60306 1485 aaKnown RBP eCLIP10.86□□□□□ -0.672e-6■■■■■ 29.3
HMGXB4-202ENST00000418170 MRS2Q9HD23 443 aa10.85□□□□□ -0.67
HMGXB4-202ENST00000418170 HSPA5P11021 654 aaKnown RBP10.85□□□□□ -0.67
HMGXB4-202ENST00000418170 AKNAQ7Z591 1439 aa10.85□□□□□ -0.67
HMGXB4-202ENST00000418170 EFCAB5A4FU69 1503 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms