RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 FAM9AQ8IZU1 332 aaPredicted RBP38.37■■■■□ 3.73
SMARCB1-205ENST00000417137 CYB5RLQ6IPT4 315 aa38.35■■■■□ 3.73
SMARCB1-205ENST00000417137 PRXQ9BXM0 1461 aa38.35■■■■□ 3.73
SMARCB1-205ENST00000417137 KIAA0586Q9BVV6 1533 aa38.34■■■■□ 3.73
SMARCB1-205ENST00000417137 JPH4Q96JJ6 628 aa38.34■■■■□ 3.73
SMARCB1-205ENST00000417137 SHROOM2Q13796 1616 aa38.21■■■■□ 3.71
SMARCB1-205ENST00000417137 PRG4Q92954 1404 aaPredicted RBP38.18■■■■□ 3.7
SMARCB1-205ENST00000417137 ARAP1Q96P48 1450 aa38.17■■■■□ 3.7
SMARCB1-205ENST00000417137 IQGAP2Q13576 1575 aa38.09■■■■□ 3.69
SMARCB1-205ENST00000417137 TRHP20396 242 aaPredicted RBP38.05■■■■□ 3.68
SMARCB1-205ENST00000417137 ERCC6L2Q5T890 1561 aa38.05■■■■□ 3.68
SMARCB1-205ENST00000417137 CARMIL2Q6F5E8 1435 aa37.99■■■■□ 3.67
SMARCB1-205ENST00000417137 KIF21BO75037 1637 aa37.98■■■■□ 3.67
SMARCB1-205ENST00000417137 CTTNBP2Q8WZ74 1663 aa37.93■■■■□ 3.66
SMARCB1-205ENST00000417137 UGGT2Q9NYU1 1516 aa37.91■■■■□ 3.66
SMARCB1-205ENST00000417137 UBTFP17480 764 aaKnown RBP37.85■■■■□ 3.65
SMARCB1-205ENST00000417137 GOLGA3Q08378 1498 aa37.84■■■■□ 3.65
SMARCB1-205ENST00000417137 EHMT2Q96KQ7 1210 aa37.83■■■■□ 3.65
SMARCB1-205ENST00000417137 TNIKQ9UKE5 1360 aa37.82■■■■□ 3.65
SMARCB1-205ENST00000417137 DISP1Q96F81 1524 aa37.8■■■■□ 3.64
SMARCB1-205ENST00000417137 PTPRGP23470 1445 aa37.79■■■■□ 3.64
SMARCB1-205ENST00000417137 TTBK1Q5TCY1 1321 aaPredicted RBP37.73■■■■□ 3.63
SMARCB1-205ENST00000417137 KIAA0556O60303 1618 aa37.69■■■■□ 3.62
SMARCB1-205ENST00000417137 RANGAP1P46060 587 aaPredicted RBP37.65■■■■□ 3.62
SMARCB1-205ENST00000417137 NPM1P06748 294 aaKnown RBP eCLIP37.59■■■■□ 3.61
SMARCB1-205ENST00000417137 P3H3Q8IVL6 736 aa37.59■■■■□ 3.61
SMARCB1-205ENST00000417137 UACAQ9BZF9 1416 aa37.52■■■■□ 3.6
SMARCB1-205ENST00000417137 SAMD9Q5K651 1589 aa37.5■■■■□ 3.59
SMARCB1-205ENST00000417137 EFCAB5A4FU69 1503 aa37.45■■■■□ 3.59
SMARCB1-205ENST00000417137 ADCY10Q96PN6 1610 aa37.44■■■■□ 3.58
SMARCB1-205ENST00000417137 UHRF1BP1LA0JNW5 1464 aa37.44■■■■□ 3.58
SMARCB1-205ENST00000417137 ABCC2Q92887 1545 aa37.37■■■■□ 3.57
SMARCB1-205ENST00000417137 FHOD3Q2V2M9 1422 aa37.36■■■■□ 3.57
SMARCB1-205ENST00000417137 PLB1Q6P1J6 1458 aa37.34■■■■□ 3.57
SMARCB1-205ENST00000417137 ABCA8O94911 1581 aa37.29■■■■□ 3.56
SMARCB1-205ENST00000417137 ARHGAP35Q9NRY4 1499 aa37.27■■■■□ 3.56
SMARCB1-205ENST00000417137 LOC105371045A0A1W2PR82 267 aa37.26■■■■□ 3.56
SMARCB1-205ENST00000417137 KDM5BQ9UGL1 1544 aa37.24■■■■□ 3.55
SMARCB1-205ENST00000417137 MAPKBP1O60336 1514 aa37.23■■■■□ 3.55
SMARCB1-205ENST00000417137 AEBP2Q6ZN18 517 aaPredicted RBP37.22■■■■□ 3.55
SMARCB1-205ENST00000417137 CLIP1P30622 1438 aa37.19■■■■□ 3.54
SMARCB1-205ENST00000417137 FMN1Q68DA7 1419 aa37.18■■■■□ 3.54
SMARCB1-205ENST00000417137 RAPGEF6Q8TEU7 1601 aa37.13■■■■□ 3.53
SMARCB1-205ENST00000417137 ASXL2Q76L83 1435 aa37.11■■■■□ 3.53
SMARCB1-205ENST00000417137 ZCCHC11Q5TAX3 1644 aaKnown RBP37.09■■■■□ 3.53
SMARCB1-205ENST00000417137 ARID3CA6NKF2 412 aa37.07■■■■□ 3.52
SMARCB1-205ENST00000417137 FAM69CQ0P6D2 419 aa37.07■■■■□ 3.52
SMARCB1-205ENST00000417137 ABCC10Q5T3U5 1492 aa37.07■■■■□ 3.52
SMARCB1-205ENST00000417137 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.05■■■■□ 3.52
SMARCB1-205ENST00000417137 HNRNPUL2Q1KMD3 747 aaKnown RBP37.05■■■■□ 3.52
SMARCB1-205ENST00000417137 CEP162Q5TB80 1403 aa37.04■■■■□ 3.52
SMARCB1-205ENST00000417137 ATP10BO94823 1461 aa37.04■■■■□ 3.52
SMARCB1-205ENST00000417137 ATP1B4Q9UN42 357 aaPredicted RBP37.02■■■■□ 3.52
SMARCB1-205ENST00000417137 NUP153P49790 1475 aaKnown RBP37.01■■■■□ 3.52
SMARCB1-205ENST00000417137 WDR7Q9Y4E6 1490 aa36.94■■■■□ 3.5
SMARCB1-205ENST00000417137 DIP2BQ9P265 1576 aa36.92■■■■□ 3.5
SMARCB1-205ENST00000417137 KCNH8Q96L42 1107 aa36.89■■■■□ 3.5
SMARCB1-205ENST00000417137 PLEKHD1A6NEE1 506 aa36.88■■■■□ 3.49
SMARCB1-205ENST00000417137 HECW1Q76N89 1606 aa36.88■■■■□ 3.49
SMARCB1-205ENST00000417137 EPRSP07814 1512 aaKnown RBP36.87■■■■□ 3.49
SMARCB1-205ENST00000417137 CASKIN1Q8WXD9 1431 aa36.86■■■■□ 3.49
SMARCB1-205ENST00000417137 KIF13AQ9H1H9 1805 aa36.85■■■■□ 3.49
SMARCB1-205ENST00000417137 GLI2P10070 1586 aa36.83■■■■□ 3.49
SMARCB1-205ENST00000417137 CDK11AQ9UQ88 783 aaPredicted RBP36.82■■■■□ 3.48
SMARCB1-205ENST00000417137 FYCO1Q9BQS8 1478 aa36.76■■■■□ 3.48
SMARCB1-205ENST00000417137 CDK13Q14004 1512 aaKnown RBP36.75■■■■□ 3.47
SMARCB1-205ENST00000417137 PCF11O94913 1555 aaKnown RBP36.74■■■■□ 3.47
SMARCB1-205ENST00000417137 CCDC18Q5T9S5 1454 aa36.7■■■■□ 3.47
SMARCB1-205ENST00000417137 CD109Q6YHK3 1445 aa36.64■■■■□ 3.46
SMARCB1-205ENST00000417137 MAP3K4Q9Y6R4 1608 aa36.6■■■■□ 3.45
SMARCB1-205ENST00000417137 VPS8Q8N3P4 1428 aa36.59■■■■□ 3.45
SMARCB1-205ENST00000417137 TSPOAP1O95153 1857 aa36.56■■■■□ 3.44
SMARCB1-205ENST00000417137 TEX14Q8IWB6 1497 aa36.56■■■■□ 3.44
SMARCB1-205ENST00000417137 CFAP43Q8NDM7 1665 aa36.55■■■■□ 3.44
SMARCB1-205ENST00000417137 TROQ12816 1431 aaPredicted RBP36.55■■■■□ 3.44
SMARCB1-205ENST00000417137 LRRIQ1Q96JM4 1722 aa36.53■■■■□ 3.44
SMARCB1-205ENST00000417137 ABCA9Q8IUA7 1624 aa36.52■■■■□ 3.44
SMARCB1-205ENST00000417137 MAGI3Q5TCQ9 1506 aa36.51■■■■□ 3.44
SMARCB1-205ENST00000417137 PPRC1Q5VV67 1664 aaKnown RBP36.45■■■■□ 3.42
SMARCB1-205ENST00000417137 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.44■■■■□ 3.423e-6■■■□□ 15.2
SMARCB1-205ENST00000417137 MTUS2Q5JR59 1369 aa36.4■■■■□ 3.42
SMARCB1-205ENST00000417137 KIF14Q15058 1648 aa36.39■■■■□ 3.42
SMARCB1-205ENST00000417137 PHLDB1Q86UU1 1377 aa36.37■■■■□ 3.41
SMARCB1-205ENST00000417137 APLP2Q06481 763 aa36.36■■■■□ 3.41
SMARCB1-205ENST00000417137 KDM6BO15054 1643 aa36.34■■■■□ 3.41
SMARCB1-205ENST00000417137 TTC37Q6PGP7 1564 aa36.32■■■■□ 3.41
SMARCB1-205ENST00000417137 PLCH2O75038 1416 aa36.31■■■■□ 3.4
SMARCB1-205ENST00000417137 NEO1Q92859 1461 aa36.29■■■■□ 3.4
SMARCB1-205ENST00000417137 MAP3K1Q13233 1512 aa36.26■■■■□ 3.4
SMARCB1-205ENST00000417137 EFCAB2Q5VUJ9 269 aa36.26■■■■□ 3.4
SMARCB1-205ENST00000417137 TIAM1Q13009 1591 aa36.25■■■■□ 3.39
SMARCB1-205ENST00000417137 FANCAO15360 1455 aa36.24■■■■□ 3.39
SMARCB1-205ENST00000417137 EHBP1L1Q8N3D4 1523 aa36.24■■■■□ 3.39
SMARCB1-205ENST00000417137 COL17A1Q9UMD9 1497 aaPredicted RBP36.2■■■■□ 3.39
SMARCB1-205ENST00000417137 ARAP3Q8WWN8 1544 aa36.19■■■■□ 3.38
SMARCB1-205ENST00000417137 AKNAQ7Z591 1439 aa36.18■■■■□ 3.38
SMARCB1-205ENST00000417137 CFAP74Q9C0B2 1584 aa36.17■■■■□ 3.38
SMARCB1-205ENST00000417137 MYO5CQ9NQX4 1742 aa36.17■■■■□ 3.38
SMARCB1-205ENST00000417137 LRRC9Q6ZRR7 1453 aa36.16■■■■□ 3.38
SMARCB1-205ENST00000417137 CCNB3Q8WWL7 1395 aa36.15■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms