RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TRIM41Q8WV44 630 aa4.81□□□□□ -1.64
MCF2-204ENST00000414978 SPOCK2Q92563 424 aa4.8□□□□□ -1.64
MCF2-204ENST00000414978 APLP2Q06481 763 aa4.79□□□□□ -1.64
MCF2-204ENST00000414978 THOC2Q8NI27 1593 aaKnown RBP4.78□□□□□ -1.64
MCF2-204ENST00000414978 SUPT5HO00267 1087 aaKnown RBP4.77□□□□□ -1.65
MCF2-204ENST00000414978 HOMEZQ8IX15 550 aa4.75□□□□□ -1.65
MCF2-204ENST00000414978 C14orf37Q86TY3 774 aa4.75□□□□□ -1.65
MCF2-204ENST00000414978 ZNF692Q9BU19 519 aaPredicted RBP4.74□□□□□ -1.65
MCF2-204ENST00000414978 OSCARQ8IYS5 282 aa4.72□□□□□ -1.65
MCF2-204ENST00000414978 PABPN1Q86U42 306 aaKnown RBP eCLIP4.71□□□□□ -1.66
MCF2-204ENST00000414978 HMGXB3Q12766 1538 aa4.71□□□□□ -1.66
MCF2-204ENST00000414978 ZCCHC6Q5VYS8 1495 aaKnown RBP4.7□□□□□ -1.66
MCF2-204ENST00000414978 TRIM26Q12899 539 aaPredicted RBP4.69□□□□□ -1.66
MCF2-204ENST00000414978 STK25O00506 426 aa4.69□□□□□ -1.66
MCF2-204ENST00000414978 RNF25Q96BH1 459 aaPredicted RBP4.68□□□□□ -1.66
MCF2-204ENST00000414978 SMARCA2P51531 1590 aa4.68□□□□□ -1.66
MCF2-204ENST00000414978 LAMC3Q9Y6N6 1575 aa4.68□□□□□ -1.66
MCF2-204ENST00000414978 UBTFP17480 764 aaKnown RBP4.67□□□□□ -1.66
MCF2-204ENST00000414978 NKX1-1Q15270 411 aaPredicted RBP4.66□□□□□ -1.66
MCF2-204ENST00000414978 NCAPD3P42695 1498 aa4.66□□□□□ -1.66
MCF2-204ENST00000414978 SCRIBQ14160 1630 aa4.65□□□□□ -1.66
MCF2-204ENST00000414978 BAZ1AQ9NRL2 1556 aaPredicted RBP4.65□□□□□ -1.66
MCF2-204ENST00000414978 ARID3AQ99856 593 aa4.65□□□□□ -1.67
MCF2-204ENST00000414978 KIF21AQ7Z4S6 1674 aa4.64□□□□□ -1.67
MCF2-204ENST00000414978 DCAF8Q5TAQ9 597 aa4.64□□□□□ -1.67
MCF2-204ENST00000414978 C1orf115Q9H7X2 142 aa4.64□□□□□ -1.67
MCF2-204ENST00000414978 PEG3Q9GZU2 1588 aa4.64□□□□□ -1.67
MCF2-204ENST00000414978 PLEKHG5O94827 1062 aa4.64□□□□□ -1.67
MCF2-204ENST00000414978 WDR62O43379 1518 aa4.63□□□□□ -1.67
MCF2-204ENST00000414978 ERCC6Q03468 1493 aa4.63□□□□□ -1.67
MCF2-204ENST00000414978 PODXL2Q9NZ53 605 aa4.63□□□□□ -1.67
MCF2-204ENST00000414978 LOC105371045A0A1W2PR82 267 aa4.62□□□□□ -1.67
MCF2-204ENST00000414978 STK24Q9Y6E0 443 aa4.62□□□□□ -1.67
MCF2-204ENST00000414978 BRPF1P55201 1214 aaPredicted RBP4.62□□□□□ -1.67
MCF2-204ENST00000414978 NEUROD2Q15784 382 aa4.61□□□□□ -1.67
MCF2-204ENST00000414978 BCL11BQ9C0K0 894 aaPredicted RBP4.6□□□□□ -1.67
MCF2-204ENST00000414978 RIMBP3CA6NJZ7 1639 aa4.6□□□□□ -1.67
MCF2-204ENST00000414978 RIMBP3BA6NNM3 1639 aa4.6□□□□□ -1.67
MCF2-204ENST00000414978 RIMBP3Q9UFD9 1639 aa4.6□□□□□ -1.67
MCF2-204ENST00000414978 GTPBP6O43824 516 aaPredicted RBP4.6□□□□□ -1.67
MCF2-204ENST00000414978 PRDM2Q13029 1718 aa4.59□□□□□ -1.67
MCF2-204ENST00000414978 HS6ST3Q8IZP7 471 aa4.59□□□□□ -1.67
MCF2-204ENST00000414978 LMOD2Q6P5Q4 547 aa4.59□□□□□ -1.68
MCF2-204ENST00000414978 PYGBP11216 843 aa4.58□□□□□ -1.68
MCF2-204ENST00000414978 STAG3Q9UJ98 1225 aa4.58□□□□□ -1.68
MCF2-204ENST00000414978 CLEC11AQ9Y240 323 aa4.58□□□□□ -1.68
MCF2-204ENST00000414978 KCNV2Q8TDN2 545 aa4.57□□□□□ -1.68
MCF2-204ENST00000414978 WDR70Q9NW82 654 aa4.56□□□□□ -1.68
MCF2-204ENST00000414978 SMARCA4P51532 1647 aa4.56□□□□□ -1.68
MCF2-204ENST00000414978 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.55□□□□□ -1.68
MCF2-204ENST00000414978 RIOK3O14730 519 aaKnown RBP4.55□□□□□ -1.68
MCF2-204ENST00000414978 NECTIN2Q92692 538 aa4.55□□□□□ -1.68
MCF2-204ENST00000414978 ZFP91Q96JP5 570 aaPredicted RBP4.55□□□□□ -1.68
MCF2-204ENST00000414978 SLC24A3Q9HC58 644 aa4.55□□□□□ -1.68
MCF2-204ENST00000414978 MRC2Q9UBG0 1479 aa4.54□□□□□ -1.68
MCF2-204ENST00000414978 ATAD2BQ9ULI0 1458 aa4.54□□□□□ -1.68
MCF2-204ENST00000414978 ERICH6Q7L0X2 663 aa4.54□□□□□ -1.68
MCF2-204ENST00000414978 POTEDQ86YR6 584 aa4.54□□□□□ -1.68
MCF2-204ENST00000414978 CADPS2Q86UW7 1296 aa4.54□□□□□ -1.68
MCF2-204ENST00000414978 ZBTB12Q9Y330 459 aaPredicted RBP4.54□□□□□ -1.68
MCF2-204ENST00000414978 ZBTB47Q9UFB7 747 aaPredicted RBP4.53□□□□□ -1.68
MCF2-204ENST00000414978 SPDYE2BA6NHP3 402 aa4.52□□□□□ -1.69
MCF2-204ENST00000414978 SEMA3EO15041 775 aa4.52□□□□□ -1.69
MCF2-204ENST00000414978 SPDYE6P0CI01 402 aa4.52□□□□□ -1.69
MCF2-204ENST00000414978 SPDYE2Q495Y8 402 aa4.52□□□□□ -1.69
MCF2-204ENST00000414978 GPBP1L1Q9HC44 474 aaPredicted RBP4.52□□□□□ -1.69
MCF2-204ENST00000414978 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.51□□□□□ -1.69
MCF2-204ENST00000414978 ARID3CA6NKF2 412 aa4.51□□□□□ -1.69
MCF2-204ENST00000414978 IL27Q8NEV9 243 aa4.51□□□□□ -1.69
MCF2-204ENST00000414978 RNF39Q9H2S5 420 aa4.51□□□□□ -1.69
MCF2-204ENST00000414978 PDS5BQ9NTI5 1447 aa4.5□□□□□ -1.69
MCF2-204ENST00000414978 WDR97A6NE52 1622 aa4.5□□□□□ -1.69
MCF2-204ENST00000414978 RANGAP1P46060 587 aaPredicted RBP4.5□□□□□ -1.69
MCF2-204ENST00000414978 FAM212AQ96EL1 285 aa4.5□□□□□ -1.69
MCF2-204ENST00000414978 SSUH2Q9Y2M2 353 aa4.5□□□□□ -1.69
MCF2-204ENST00000414978 NESP48681 1621 aa4.49□□□□□ -1.69
MCF2-204ENST00000414978 RASEFQ8IZ41 740 aa4.49□□□□□ -1.69
MCF2-204ENST00000414978 ARHGEF11O15085 1522 aa4.49□□□□□ -1.69
MCF2-204ENST00000414978 GSE1Q14687 1217 aa4.49□□□□□ -1.69
MCF2-204ENST00000414978 TSPYL2Q9H2G4 693 aaPredicted RBP4.48□□□□□ -1.69
MCF2-204ENST00000414978 DSG3P32926 999 aa4.48□□□□□ -1.69
MCF2-204ENST00000414978 NPM2Q86SE8 214 aaKnown RBP4.48□□□□□ -1.69
MCF2-204ENST00000414978 P3H3Q8IVL6 736 aa4.48□□□□□ -1.69
MCF2-204ENST00000414978 VGFO15240 615 aaPredicted RBP4.47□□□□□ -1.69
MCF2-204ENST00000414978 NUBP1P53384 320 aa4.47□□□□□ -1.69
MCF2-204ENST00000414978 ZC3H15Q8WU90 426 aaKnown RBP4.47□□□□□ -1.69
MCF2-204ENST00000414978 RSF1Q96T23 1441 aaPredicted RBP4.46□□□□□ -1.7
MCF2-204ENST00000414978 ONECUT3O60422 494 aaPredicted RBP4.46□□□□□ -1.7
MCF2-204ENST00000414978 IGSF3O75054 1194 aa4.46□□□□□ -1.7
MCF2-204ENST00000414978 CHD1O14646 1710 aa4.45□□□□□ -1.7
MCF2-204ENST00000414978 PCDHB8Q9UN66 801 aa4.45□□□□□ -1.7
MCF2-204ENST00000414978 PCDHB13Q9Y5F0 798 aa4.45□□□□□ -1.7
MCF2-204ENST00000414978 BAZ1BQ9UIG0 1483 aaKnown RBP4.45□□□□□ -1.7
MCF2-204ENST00000414978 KRI1Q8N9T8 703 aaKnown RBP4.44□□□□□ -1.7
MCF2-204ENST00000414978 RGS22Q8NE09 1264 aa4.43□□□□□ -1.7
MCF2-204ENST00000414978 PRR29P0C7W0 189 aa4.43□□□□□ -1.7
MCF2-204ENST00000414978 PPP1R37O75864 691 aa4.43□□□□□ -1.7
MCF2-204ENST00000414978 CLASP1Q7Z460 1538 aa4.43□□□□□ -1.7
MCF2-204ENST00000414978 ATP1B4Q9UN42 357 aaPredicted RBP4.42□□□□□ -1.7
MCF2-204ENST00000414978 ARAP1Q96P48 1450 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms