RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SCAF1Q9H7N4 1312 aaKnown RBP15.61■□□□□ 0.09
PTPRF-204ENST00000412568 RAPGEF2Q9Y4G8 1499 aa15.6■□□□□ 0.09
PTPRF-204ENST00000412568 CHGAP10645 457 aaKnown RBP15.6■□□□□ 0.09
PTPRF-204ENST00000412568 SENP3Q9H4L4 574 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-204ENST00000412568 PLEKHD1A6NEE1 506 aa15.59■□□□□ 0.09
PTPRF-204ENST00000412568 NPM1P06748 294 aaKnown RBP eCLIP15.59■□□□□ 0.09
PTPRF-204ENST00000412568 PLPPR3Q6T4P5 718 aa15.57■□□□□ 0.08
PTPRF-204ENST00000412568 EIF4G1Q04637 1599 aaKnown RBP15.57■□□□□ 0.08
PTPRF-204ENST00000412568 VPS8Q8N3P4 1428 aa15.56■□□□□ 0.08
PTPRF-204ENST00000412568 CFDP1Q9UEE9 299 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-204ENST00000412568 CCNB3Q8WWL7 1395 aa15.51■□□□□ 0.07
PTPRF-204ENST00000412568 PDS5BQ9NTI5 1447 aa15.51■□□□□ 0.07
PTPRF-204ENST00000412568 RGL3Q3MIN7 710 aa15.49■□□□□ 0.07
PTPRF-204ENST00000412568 SENP3-EIF4A1A0A087X0R7 540 aa15.48■□□□□ 0.07
PTPRF-204ENST00000412568 FAM9BQ8IZU0 186 aa15.47■□□□□ 0.07
PTPRF-204ENST00000412568 SALL2Q9Y467 1007 aaPredicted RBP15.46■□□□□ 0.07
PTPRF-204ENST00000412568 DNAJC5BQ9UF47 199 aa15.46■□□□□ 0.07
PTPRF-204ENST00000412568 FHOD3Q2V2M9 1422 aa15.45■□□□□ 0.06
PTPRF-204ENST00000412568 FANCD2Q9BXW9 1451 aa15.44■□□□□ 0.06
PTPRF-204ENST00000412568 FHAD1B1AJZ9 1412 aa15.44■□□□□ 0.06
PTPRF-204ENST00000412568 HNRNPUQ00839 825 aaKnown RBP eCLIP15.43■□□□□ 0.06
PTPRF-204ENST00000412568 FOXD1Q16676 465 aa15.43■□□□□ 0.06
PTPRF-204ENST00000412568 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
PTPRF-204ENST00000412568 NCAPD3P42695 1498 aa15.39■□□□□ 0.05
PTPRF-204ENST00000412568 IGF1RP08069 1367 aa15.37■□□□□ 0.05
PTPRF-204ENST00000412568 STAG3Q9UJ98 1225 aa15.37■□□□□ 0.05
PTPRF-204ENST00000412568 EIF4G2P78344 907 aaKnown RBP eCLIP15.36■□□□□ 0.052e-6■■■■■ 34.6
PTPRF-204ENST00000412568 FKBP8Q14318 412 aa15.34■□□□□ 0.05
PTPRF-204ENST00000412568 FGD5Q6ZNL6 1462 aa15.34■□□□□ 0.05
PTPRF-204ENST00000412568 ESF1Q9H501 851 aaKnown RBP15.34■□□□□ 0.05
PTPRF-204ENST00000412568 NESP48681 1621 aa15.34■□□□□ 0.05
PTPRF-204ENST00000412568 MRS2Q9HD23 443 aa15.31■□□□□ 0.04
PTPRF-204ENST00000412568 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-204ENST00000412568 RAB3GAP2Q9H2M9 1393 aa15.31■□□□□ 0.04
PTPRF-204ENST00000412568 CLSPNQ9HAW4 1339 aa15.3■□□□□ 0.04
PTPRF-204ENST00000412568 BCL11AQ9H165 835 aa15.29■□□□□ 0.04
PTPRF-204ENST00000412568 JPH4Q96JJ6 628 aa15.29■□□□□ 0.04
PTPRF-204ENST00000412568 BICRAQ9NZM4 1560 aa15.29■□□□□ 0.04
PTPRF-204ENST00000412568 IRX6P78412 446 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-204ENST00000412568 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
PTPRF-204ENST00000412568 TMC1Q8TDI8 760 aa15.27■□□□□ 0.04
PTPRF-204ENST00000412568 ARHGAP35Q9NRY4 1499 aa15.27■□□□□ 0.04
PTPRF-204ENST00000412568 SETD5Q9C0A6 1442 aa15.27■□□□□ 0.03
PTPRF-204ENST00000412568 RTL5Q5HYW3 569 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-204ENST00000412568 FMN1Q68DA7 1419 aa15.25■□□□□ 0.03
PTPRF-204ENST00000412568 AQRO60306 1485 aaKnown RBP eCLIP15.23■□□□□ 0.031e-6■■■■■ 36.8
PTPRF-204ENST00000412568 CARD11Q9BXL7 1154 aa15.22■□□□□ 0.03
PTPRF-204ENST00000412568 CFTRP13569 1480 aa15.21■□□□□ 0.03
PTPRF-204ENST00000412568 SLC24A1O60721 1099 aa15.2■□□□□ 0.02
PTPRF-204ENST00000412568 HNRNPMP52272 730 aaKnown RBP eCLIP15.2■□□□□ 0.02
PTPRF-204ENST00000412568 DCAF11Q8TEB1 546 aa15.2■□□□□ 0.02
PTPRF-204ENST00000412568 PKD2Q13563 968 aa15.2■□□□□ 0.02
PTPRF-204ENST00000412568 GAPVD1Q14C86 1478 aa15.18■□□□□ 0.02
PTPRF-204ENST00000412568 CARMIL2Q6F5E8 1435 aa15.17■□□□□ 0.02
PTPRF-204ENST00000412568 MPHOSPH9Q99550 1183 aa15.17■□□□□ 0.02
PTPRF-204ENST00000412568 CC2D2AQ9P2K1 1620 aa15.16■□□□□ 0.02
PTPRF-204ENST00000412568 CANXP27824 592 aaKnown RBP15.15■□□□□ 0.02
PTPRF-204ENST00000412568 KIF21BO75037 1637 aa15.12■□□□□ 0.01
PTPRF-204ENST00000412568 CUX1P39880 1505 aa15.12■□□□□ 0.01
PTPRF-204ENST00000412568 PLEKHG5O94827 1062 aa15.12■□□□□ 0.01
PTPRF-204ENST00000412568 ZNF644Q9H582 1327 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-204ENST00000412568 ARAP1Q96P48 1450 aa15.12■□□□□ 0.01
PTPRF-204ENST00000412568 GGT6Q6P531 493 aa15.12■□□□□ 0.01
PTPRF-204ENST00000412568 MLECQ14165 292 aa15.11■□□□□ 0.01
PTPRF-204ENST00000412568 DHX57Q6P158 1386 aaKnown RBP15.11■□□□□ 0.01
PTPRF-204ENST00000412568 HSPA5P11021 654 aaKnown RBP15.11■□□□□ 0.01
PTPRF-204ENST00000412568 ARID4BQ4LE39 1312 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-204ENST00000412568 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
PTPRF-204ENST00000412568 PPP1R15AO75807 674 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-204ENST00000412568 NUP155O75694 1391 aa15.09■□□□□ 0.01
PTPRF-204ENST00000412568 PHLDB1Q86UU1 1377 aa15.08■□□□□ 0
PTPRF-204ENST00000412568 NEFMP07197 916 aa15.06■□□□□ 0
PTPRF-204ENST00000412568 TIMELESSQ9UNS1 1208 aa15.06■□□□□ 0
PTPRF-204ENST00000412568 WDR43Q15061 677 aaKnown RBP eCLIP15.05■□□□□ -0
PTPRF-204ENST00000412568 EFCAB2Q5VUJ9 269 aa15.04■□□□□ -0
PTPRF-204ENST00000412568 TNNT2P45379 298 aaPredicted RBP15.03■□□□□ -0
PTPRF-204ENST00000412568 CC2D1BQ5T0F9 858 aaKnown RBP15.03■□□□□ -0
PTPRF-204ENST00000412568 PRXQ9BXM0 1461 aa15.03■□□□□ -0
PTPRF-204ENST00000412568 SUPT16HQ9Y5B9 1047 aaKnown RBP15.03■□□□□ -0
PTPRF-204ENST00000412568 POLA1P09884 1462 aaPredicted RBP15.03■□□□□ -0
PTPRF-204ENST00000412568 HMGXB3Q12766 1538 aa15.02■□□□□ -0
PTPRF-204ENST00000412568 SAFB2Q14151 953 aaKnown RBP eCLIP15.02■□□□□ -0
PTPRF-204ENST00000412568 TOPBP1Q92547 1522 aa15.01□□□□□ -0.01
PTPRF-204ENST00000412568 NPM2Q86SE8 214 aaKnown RBP15.01□□□□□ -0.01
PTPRF-204ENST00000412568 PTPRGP23470 1445 aa15.01□□□□□ -0.01
PTPRF-204ENST00000412568 UNC13AQ9UPW8 1703 aa15.01□□□□□ -0.01
PTPRF-204ENST00000412568 KIF3BO15066 747 aa15□□□□□ -0.01
PTPRF-204ENST00000412568 TOP2BQ02880 1626 aa15□□□□□ -0.01
PTPRF-204ENST00000412568 ANKRD30AQ9BXX3 1397 aa14.98□□□□□ -0.01
PTPRF-204ENST00000412568 KNSTRNQ9Y448 316 aa14.98□□□□□ -0.01
PTPRF-204ENST00000412568 CCDC18Q5T9S5 1454 aa14.98□□□□□ -0.01
PTPRF-204ENST00000412568 CCDC136Q96JN2 1154 aa14.98□□□□□ -0.01
PTPRF-204ENST00000412568 NEUROD2Q15784 382 aa14.97□□□□□ -0.01
PTPRF-204ENST00000412568 PPM1GO15355 546 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-204ENST00000412568 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-204ENST00000412568 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
PTPRF-204ENST00000412568 NUTM2DQ5VT03 806 aaPredicted RBP14.96□□□□□ -0.01
PTPRF-204ENST00000412568 LRRC9Q6ZRR7 1453 aa14.94□□□□□ -0.02
PTPRF-204ENST00000412568 SPAG9O60271 1321 aaKnown RBP14.92□□□□□ -0.02
PTPRF-204ENST00000412568 STK26Q9P289 416 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms