RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 MAGI1Q96QZ7 1491 aaPredicted RBP19.66■□□□□ 0.74
CHMP3-204ENST00000409727 CTTNBP2Q8WZ74 1663 aa19.65■□□□□ 0.74
CHMP3-204ENST00000409727 CHMP7Q8WUX9 453 aaPredicted RBP19.63■□□□□ 0.73
CHMP3-204ENST00000409727 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
CHMP3-204ENST00000409727 ARHGAP35Q9NRY4 1499 aa19.6■□□□□ 0.73
CHMP3-204ENST00000409727 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
CHMP3-204ENST00000409727 PPARGC1BQ86YN6 1023 aaKnown RBP19.59■□□□□ 0.73
CHMP3-204ENST00000409727 ARAP1Q96P48 1450 aa19.59■□□□□ 0.73
CHMP3-204ENST00000409727 P3H3Q8IVL6 736 aa19.58■□□□□ 0.72
CHMP3-204ENST00000409727 VPS8Q8N3P4 1428 aa19.55■□□□□ 0.72
CHMP3-204ENST00000409727 IQGAP2Q13576 1575 aa19.5■□□□□ 0.71
CHMP3-204ENST00000409727 TTBK1Q5TCY1 1321 aaPredicted RBP19.49■□□□□ 0.71
CHMP3-204ENST00000409727 CEP170Q5SW79 1584 aa19.49■□□□□ 0.71
CHMP3-204ENST00000409727 FHOD3Q2V2M9 1422 aa19.48■□□□□ 0.71
CHMP3-204ENST00000409727 EFCAB5A4FU69 1503 aa19.47■□□□□ 0.71
CHMP3-204ENST00000409727 KIAA0586Q9BVV6 1533 aa19.46■□□□□ 0.71
CHMP3-204ENST00000409727 CHD1O14646 1710 aa19.45■□□□□ 0.7
CHMP3-204ENST00000409727 APLP2Q06481 763 aa19.43■□□□□ 0.7
CHMP3-204ENST00000409727 NUP160Q12769 1436 aa19.43■□□□□ 0.7
CHMP3-204ENST00000409727 SAMD9Q5K651 1589 aa19.43■□□□□ 0.7
CHMP3-204ENST00000409727 PCGF6Q9BYE7 350 aa19.39■□□□□ 0.69
CHMP3-204ENST00000409727 ATP1B4Q9UN42 357 aaPredicted RBP19.38■□□□□ 0.69
CHMP3-204ENST00000409727 UGGT2Q9NYU1 1516 aa19.38■□□□□ 0.69
CHMP3-204ENST00000409727 TRIM26Q12899 539 aaPredicted RBP19.34■□□□□ 0.69
CHMP3-204ENST00000409727 PCF11O94913 1555 aaKnown RBP19.34■□□□□ 0.69
CHMP3-204ENST00000409727 JPH4Q96JJ6 628 aa19.33■□□□□ 0.69
CHMP3-204ENST00000409727 FMN1Q68DA7 1419 aa19.32■□□□□ 0.68
CHMP3-204ENST00000409727 DISP1Q96F81 1524 aa19.32■□□□□ 0.68
CHMP3-204ENST00000409727 KIAA0556O60303 1618 aa19.31■□□□□ 0.68
CHMP3-204ENST00000409727 CASKIN1Q8WXD9 1431 aa19.27■□□□□ 0.68
CHMP3-204ENST00000409727 KANK4Q5T7N3 995 aaPredicted RBP19.26■□□□□ 0.67
CHMP3-204ENST00000409727 FYCO1Q9BQS8 1478 aa19.26■□□□□ 0.67
CHMP3-204ENST00000409727 CARMIL2Q6F5E8 1435 aa19.24■□□□□ 0.67
CHMP3-204ENST00000409727 PRG4Q92954 1404 aaPredicted RBP19.23■□□□□ 0.67
CHMP3-204ENST00000409727 TIAM1Q13009 1591 aa19.22■□□□□ 0.67
CHMP3-204ENST00000409727 ARID3CA6NKF2 412 aa19.19■□□□□ 0.66
CHMP3-204ENST00000409727 CLASP1Q7Z460 1538 aa19.18■□□□□ 0.66
CHMP3-204ENST00000409727 SHROOM2Q13796 1616 aa19.16■□□□□ 0.66
CHMP3-204ENST00000409727 CFAP43Q8NDM7 1665 aa19.16■□□□□ 0.66
CHMP3-204ENST00000409727 MAP3K1Q13233 1512 aa19.16■□□□□ 0.66
CHMP3-204ENST00000409727 LRRIQ1Q96JM4 1722 aa19.15■□□□□ 0.66
CHMP3-204ENST00000409727 HECW1Q76N89 1606 aa19.14■□□□□ 0.66
CHMP3-204ENST00000409727 LRRC9Q6ZRR7 1453 aa19.13■□□□□ 0.65
CHMP3-204ENST00000409727 ERCC6L2Q5T890 1561 aa19.13■□□□□ 0.65
CHMP3-204ENST00000409727 PLB1Q6P1J6 1458 aa19.12■□□□□ 0.65
CHMP3-204ENST00000409727 RAPGEF6Q8TEU7 1601 aa19.11■□□□□ 0.65
CHMP3-204ENST00000409727 OSCARQ8IYS5 282 aa19.11■□□□□ 0.65
CHMP3-204ENST00000409727 EPRSP07814 1512 aaKnown RBP19.09■□□□□ 0.65
CHMP3-204ENST00000409727 CDK13Q14004 1512 aaKnown RBP19.09■□□□□ 0.65
CHMP3-204ENST00000409727 PTPRGP23470 1445 aa19.09■□□□□ 0.65
CHMP3-204ENST00000409727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.07■□□□□ 0.64
CHMP3-204ENST00000409727 HNRNPUL2Q1KMD3 747 aaKnown RBP19.07■□□□□ 0.64
CHMP3-204ENST00000409727 CCDC18Q5T9S5 1454 aa19.07■□□□□ 0.64
CHMP3-204ENST00000409727 NUP153P49790 1475 aaKnown RBP19.07■□□□□ 0.64
CHMP3-204ENST00000409727 MTUS2Q5JR59 1369 aa19.07■□□□□ 0.64
CHMP3-204ENST00000409727 ABCA8O94911 1581 aa19.02■□□□□ 0.64
CHMP3-204ENST00000409727 MAGI3Q5TCQ9 1506 aa19.01■□□□□ 0.63
CHMP3-204ENST00000409727 PHLDB1Q86UU1 1377 aa18.99■□□□□ 0.63
CHMP3-204ENST00000409727 EHBP1L1Q8N3D4 1523 aa18.98■□□□□ 0.63
CHMP3-204ENST00000409727 UACAQ9BZF9 1416 aa18.96■□□□□ 0.63
CHMP3-204ENST00000409727 SUPT6HQ7KZ85 1726 aaKnown RBP18.93■□□□□ 0.62
CHMP3-204ENST00000409727 CDK11AQ9UQ88 783 aaPredicted RBP18.93■□□□□ 0.62
CHMP3-204ENST00000409727 RRBP1Q9P2E9 1410 aaKnown RBP18.93■□□□□ 0.62
CHMP3-204ENST00000409727 NCOA2Q15596 1464 aa18.93■□□□□ 0.62
CHMP3-204ENST00000409727 ATP10BO94823 1461 aa18.92■□□□□ 0.62
CHMP3-204ENST00000409727 CCNB3Q8WWL7 1395 aa18.92■□□□□ 0.62
CHMP3-204ENST00000409727 FOXD1Q16676 465 aa18.9■□□□□ 0.62
CHMP3-204ENST00000409727 ABCC2Q92887 1545 aa18.89■□□□□ 0.61
CHMP3-204ENST00000409727 FAM50AQ14320 339 aaKnown RBP18.88■□□□□ 0.61
CHMP3-204ENST00000409727 ITGAEP38570 1179 aa18.88■□□□□ 0.61
CHMP3-204ENST00000409727 PLEKHD1A6NEE1 506 aa18.86■□□□□ 0.61
CHMP3-204ENST00000409727 TROQ12816 1431 aaPredicted RBP18.86■□□□□ 0.61
CHMP3-204ENST00000409727 ARHGEF11O15085 1522 aa18.84■□□□□ 0.61
CHMP3-204ENST00000409727 MYOM3Q5VTT5 1437 aa18.84■□□□□ 0.61
CHMP3-204ENST00000409727 FGD6Q6ZV73 1430 aa18.83■□□□□ 0.61
CHMP3-204ENST00000409727 KIF14Q15058 1648 aa18.81■□□□□ 0.6
CHMP3-204ENST00000409727 UHRF1BP1LA0JNW5 1464 aa18.81■□□□□ 0.6
CHMP3-204ENST00000409727 ADCY10Q96PN6 1610 aa18.79■□□□□ 0.6
CHMP3-204ENST00000409727 PLPPR3Q6T4P5 718 aa18.78■□□□□ 0.6
CHMP3-204ENST00000409727 ZCCHC11Q5TAX3 1644 aaKnown RBP18.78■□□□□ 0.6
CHMP3-204ENST00000409727 KDM5BQ9UGL1 1544 aa18.76■□□□□ 0.59
CHMP3-204ENST00000409727 PTPN23Q9H3S7 1636 aa18.75■□□□□ 0.59
CHMP3-204ENST00000409727 KCNH8Q96L42 1107 aa18.73■□□□□ 0.59
CHMP3-204ENST00000409727 MIA2Q96PC5 1412 aa18.7■□□□□ 0.58
CHMP3-204ENST00000409727 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.7■□□□□ 0.58
CHMP3-204ENST00000409727 CFDP1Q9UEE9 299 aaPredicted RBP18.7■□□□□ 0.58
CHMP3-204ENST00000409727 GPATCH8Q9UKJ3 1502 aaKnown RBP18.7■□□□□ 0.58
CHMP3-204ENST00000409727 RIMBP3CA6NJZ7 1639 aa18.7■□□□□ 0.58
CHMP3-204ENST00000409727 RIMBP3BA6NNM3 1639 aa18.7■□□□□ 0.58
CHMP3-204ENST00000409727 RIMBP3Q9UFD9 1639 aa18.7■□□□□ 0.58
CHMP3-204ENST00000409727 ABCC10Q5T3U5 1492 aa18.69■□□□□ 0.58
CHMP3-204ENST00000409727 ZNF644Q9H582 1327 aaPredicted RBP18.69■□□□□ 0.58
CHMP3-204ENST00000409727 CYB5RLQ6IPT4 315 aa18.69■□□□□ 0.58
CHMP3-204ENST00000409727 ZNF777Q9ULD5 760 aaPredicted RBP18.69■□□□□ 0.58
CHMP3-204ENST00000409727 ITSN2Q9NZM3 1697 aa18.68■□□□□ 0.58
CHMP3-204ENST00000409727 TCOF1Q13428 1488 aaKnown RBP18.67■□□□□ 0.58
CHMP3-204ENST00000409727 NPM1P06748 294 aaKnown RBP eCLIP18.67■□□□□ 0.58
CHMP3-204ENST00000409727 CCER1Q8TC90 406 aaPredicted RBP18.66■□□□□ 0.58
CHMP3-204ENST00000409727 HRCP23327 699 aa18.65■□□□□ 0.58
CHMP3-204ENST00000409727 CDC42BPAQ5VT25 1732 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms